1PJB,3UHA,1NM5,2VHW,1SAY,2QRJ,2QRL,1NM5,1PJC


Conserved Protein Domain Family
Ala_dh_like

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cd01620: Ala_dh_like 
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Alanine dehydrogenase and related dehydrogenases
Alanine dehydrogenase/Transhydrogenase, such as the hexameric L-alanine dehydrogenase of Phormidium lapideum, contain 2 Rossmann fold-like domains linked by an alpha helical region. Related proteins include Saccharopine Dehydrogenase (SDH), bifunctional lysine ketoglutarate reductase /saccharopine dehydrogenase enzyme, N(5)-(carboxyethyl)ornithine synthase, and Rubrum transdehydrogenase. Alanine dehydrogenase (L-AlaDH) catalyzes the NAD-dependent conversion of pyrucate to L-alanine via reductive amination. Transhydrogenases found in bacterial and inner mitochondrial membranes link NAD(P)(H)-dependent redox reactions to proton translocation. The energy of the proton electrochemical gradient (delta-p), generated by the respiratory electron transport chain, is consumed by transhydrogenase in NAD(P)+ reduction. Transhydrogenase is likely involved in the regulation of the citric acid cycle. Rubrum transhydrogenase has 3 components, dI, dII, and dIII. dII spans the membrane while dI and dIII protrude on the cytoplasmic/matirx side. DI contains 2 domains with Rossmann folds, linked by a long alpha helix, and contains a NAD binding site. Two dI polypeptides (represented in this sub-family) spontaneously form a heterotrimer with one dIII in the absence of dII. In the heterotrimer, both dI chains may bind NAD, but only one is well-ordered. dIII also binds a well-ordered NADP, but in a different orientation than classical Rossmann domains.
Statistics
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PSSM-Id: 240621
Aligned: 13 rows
Threshold Bit Score: 340.54
Created: 12-Dec-2003
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
NAD(P) bindingputative ligand
Conserved site includes 16 residues -Click on image for an interactive view with Cn3D
Feature 1:NAD(P) binding site [chemical binding site]
Evidence:
  • Structure:3UHA: Saccharomyces Cervisiae Saccharopine Dehydrogenase bound to NAD; contacts at 4A
  • Structure:1NM5_A: Rhodospirillum rubrum Transhydrogenase bound to NAD; contacts at 4A
  • Structure:1PJC: Phormidium lapideum L-Alanine Dehydrogenase bound to NAD; contacts at 4A
  • Structure:2VHV: Mycobacterium tuberculosis L-Alanine mutant bound to NAD; contacts at 4A
  • Citation:PMID 9761911
  • Comment:GxGxxG(17-18x)D is the characteristic NAD binding site motif of FHD-like proteins
  • Comment:Saccharomyces Cervisiae Saccharopine Dehydrogenase retains the 3D arangment of the GxGxxG(17-18x)D NAD binding site motif, but has altered spacing between the conserved residues: GxxGxxG(17-20x)D

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                      
1PJB_A       2 EIGVPKEIk-nQEFRVGLsPSSVRTLveaGHTVFIETQAGIgaGFADQDYVQAGAQVvpsa--kdawSREMVVKVKEPlp 78   Phormidium lapideum
3UHA_A       5 TLHLRAETk-pLEARAALtPTTVKKLiakGFKIYVEDSPQS--TFNINEYRQAGAIIvpagswktapRDRIIIGLKEMpe 81   Saccharomyces ce...
1NM5_A       2 KIAIPKERr-pGEDRVAIsPEVVKKLvglGFEVIVEQGAGVgaSITDDALTAAGATIastaa-qalsQADVVWKVQRPmt 79   Rhodospirillum r...
2VHW_A       2 RVGIPTETk-nNEFRVAItPAGVAELtrrGHEVLIQAGAGEgsAITDADFKAAGAQLvgtad-qvwaDADLLLKVKEPia 79   Mycobacterium tu...
1SAY_A       2 EIGVPKEIk-nQEFRVGLsPSSVRTLveaGHTVFIETQAGIgaGFADQDYVQAGAQVvpsa--kdawSREMVVKVKEPlp 78   Phormidium lapideum
2QRJ_A      26 TLHLRAETk-pLEARAALtPTTVKKLiakGFKIYVEDSPQS--TFNINEYRQAGAIIvpagswktapRDRIIIGLKEMpe 102  baker's yeast
2QRL_A      26 TLHLRAETk-pLEARAALtPTTVKKLiakGFKIYVEDSPQS--TFNINEYRQAGAIIvpagswktapRDRIIIGLKEMpe 102  baker's yeast
1NM5_B       2 KIAIPKERr-pGEDRVAIsPEVVKKLvglGFEVIVEQGAGVgaSITDDALTAAGATIastaa-qalsQADVVWKVQRPmt 79   Rhodospirillum r...
1PJC_A       2 EIGVPKEIk-nQEFRVGLsPSSVRTLveaGHTVFIETQAGIgaGFADQDYVQAGAQVvpsa--kdawSREMVVKVKEPlp 78   Phormidium lapideum
ADX67668     3 TVGFPISQk-nNEKRRCLiPSDIAKIk-hKKQIYIETGYGDvlGYSDEDYLQAGVNVvsqe---evlSKDIICDGKIGd- 76   Weeksella virosa...
EAS01032   624 TRSVYNEQsesNETRVAItPSAVKPLlknGVHVWIEKDSGKssGFSDEQYYKAGAKIatan--eifqNANILVFISQLkd 701  Tetrahymena ther...
AAO35484     3 SLGFPRMHkeqNEKRDFL-PDFFRMMkseKADFYLEQGYGSsmGISEEEYLKANEHIkfvsn-kecyEKDIVVVLRSPef 80   Clostridium teta...
CBH20638     3 TLGFPRMHkeeGEIRAFL-PDFFEKLeinGAKIYIEEGYGSkmGYTKEDYLSVNKNIefvsk-eesyKQDIIIVLRSPef 80   Clostridium stic...
Feature 1                                                                         #  #         
1PJB_A      79 -----aEYDLMQk-dQLLFTYLHLAa-aRELTEQLMr---vGLTAIAYETVELpnrs---lplLTPMSIIAGRLSVQFGA 145  Phormidium lapideum
3UHA_A      82 -----tDTFPLV---HEHIQFAHCYkdqAGWQNVLMrfikgHGTLYDLEFLENdqg-----rrVAAFGFYAGFAGAALGV 148  Saccharomyces ce...
1NM5_A      80 aeegtdEVALIKe-gAVLMCHLGALt-nRPVVEALTk---rKITAYAMELMPRisran-smdiLSSQSNLAGYRAVIDGA 153  Rhodospirillum r...
2VHW_A      80 -----aEYGRLRh-gQILFTFLHLAa-sRACTDALLd---sGTTSIAYETVQTadga---lplLAPMSEVAGRLAAQVGA 146  Mycobacterium tu...
1SAY_A      79 -----aEYDLMQk-dQLLFTYLHLAa-aRELTEQLMr---vGLTAIAYETVELpnrs---lplLTPMSIIAGRLSVQFGA 145  Phormidium lapideum
2QRJ_A     103 -----tDTFPLV---HEHIQFAHCYkdqAGWQNVLMrfikgHGTLYDLEFLENdqg-----rrVAAFGFYAGFAGAALGV 169  baker's yeast
2QRL_A     103 -----tDTFPLV---HEHIQFAHCYkdqAGWQNVLMrfikgHGTLYDLEFLENdqg-----rrVAAFGFYAGFAGAALGV 169  baker's yeast
1NM5_B      80 aeegtdEVALIKe-gAVLMCHLGALt-nRPVVEALTk---rKITAYAMELMPRisran-smdiLSSQSNLAGYRAVIDGA 153  Rhodospirillum r...
1PJC_A      79 -----aEYDLMQk-dQLLFTYLHLAa-aRELTEQLMr---vGLTAIAYETVELpnrs---lplLTPMSIIAGRLSVQFGA 145  Phormidium lapideum
ADX67668    77 -----aAYLPQLk-nQTIYGWVHAVq-nRDITDIMId---nSLTAYAWEDMFEdgr-----htFWRNNEIAGEAAIMHAY 141  Weeksella virosa...
EAS01032   702 -----kQINQIGkavELLVAPLGKEk--KQVVSKLAkn--eKLTVVDLSDISPeviraqklstSANQETLSCYRSVFEGF 772  Tetrahymena ther...
AAO35484    81 -----nEIDYMKd-gSSLVSMLHYPt-rATRVKKLKs---kNVFGVSMDSLRNdfl-----erIVVNYNGTSGNGIEMAF 145  Clostridium teta...
CBH20638    81 -----dELELIPd-gKILVSMLHYPt-rAKRIKVLKr---kNIKAVSLDSIRGdfm-----qrLVFNAKGTSLHGMEIAF 145  Clostridium stic...
Feature 1                                                         #  ###                     ##
1PJB_A     146 rflerqqggrg-----------------------vllggvpgvkpGKVVILGG-GVVGTEAAKMAvGLGA---QVQIFDI 198  Phormidium lapideum
3UHA_A     149 rdwafkqthsddedlpavspypnekalvkdvtkdykealatgarkPTVLIIGAlGRSGSGAIDLLhKVGIpdaNILKWDI 228  Saccharomyces ce...
1NM5_A     154 yefarafpmm--------------------------mtaagtvppARVLVFGV-GVAGLQAIATAkRLGA---VVMATDV 203  Rhodospirillum r...
2VHW_A     147 yhlmrtqggrg-----------------------vlmggvpgvepADVVVIGA-GTAGYNAARIAnGMGA---TVTVLDI 199  Mycobacterium tu...
1SAY_A     146 rflerqqggrg-----------------------vllggvpgvkpGKVVILGG-GVVGTEAAKMAvGLGA---QVQIFDI 198  Phormidium lapideum
2QRJ_A     170 rdwafkqthsddedlpavspypnekalvkdvtkdykealatgarkPTVLIIGAlGRCGSGAIDLLhKVGIpdaNILKWDI 249  baker's yeast
2QRL_A     170 rdwafkqthsddedlpavspypnekalvkdvtkdykealatgarkPTVLIIGAlGRCGSGAIDLLhKVGIpdaNILKWDI 249  baker's yeast
1NM5_B     154 yefarafpmm--------------------------mtaagtvppARVLVFGV-GVAGLQAIATAkRLGA---VVMATDV 203  Rhodospirillum r...
1PJC_A     146 rflerqqggrg-----------------------vllggvpgvkpGKVVILGG-GVVGTEAAKMAvGLGA---QVQIFDI 198  Phormidium lapideum
ADX67668   142 tlygv------------------------------------fpydTKVAIIGR-GNIGKGALKILtFMGA---DVTVYDR 181  Weeksella virosa...
EAS01032   773 yhlnkiarpv--------------------------ynstgrspgAHVLVIGA-DHLGLTVASIAkQYGS---IVRVYDR 822  Tetrahymena ther...
AAO35484   146 qelsksmkd----------------------------fylkerdvINVTILGM-GMVGLYAAKSAgKYGN---LELNSKM 193  Clostridium teta...
CBH20638   146 selekiksd----------------------------fysntrgpLEVSIIGM-GMVGLQAGKAAsKFAL---PEIAKKI 193  Clostridium stic...
Feature 1      #                                                           ###                 
1PJB_A     199 Nverlsyletlfgsrv----------------------ellysnsaeietavaEADLLIGAVLvpgrrapilvpaslveq 256  Phormidium lapideum
3UHA_A     229 Ketsrgg----------------------------------------pfdeipQADIFINCIYlskpiapftnmeklnnp 268  Saccharomyces ce...
1NM5_A     204 RaatkeqveslggkfitvddeamktaetaggyakemgeefrkkqaeavlkelvKTDIAITTALipgkpapvliteemvtk 283  Rhodospirillum r...
2VHW_A     200 Nidklrqldaefcgri----------------------htryssayelegavkRADLVIGAVLvpgakapklvsnslvah 257  Mycobacterium tu...
1SAY_A     199 Nverlsyletlfgsrv----------------------ellysnsaeietavaEADLLIGAVLvpgrrapilvpaslveq 256  Phormidium lapideum
2QRJ_A     250 Ketsrgg----------------------------------------pfdeipQADIFINCIYlskpiapftnmeklnnp 289  baker's yeast
2QRL_A     250 Ketsrgg----------------------------------------pfdeipQADIFINCIYlskpiapftnmeklnnp 289  baker's yeast
1NM5_B     204 RaatkeqveslggkfitvddeamktaetaggyakemgeefrkkqaeavlkelvKTDIAITTALipgkpapvliteemvtk 283  Rhodospirillum r...
1PJC_A     199 Nverlsyletlfgsrv----------------------ellysnsaeietavaEADLLIGAVLvpgrrapilvpaslveq 256  Phormidium lapideum
ADX67668   182 Kteklf------------------------------------------qkeleQYDVIVNCILwdtkrtdhiiykqdlkr 219  Weeksella virosa...
EAS01032   823 Rdglkhlikksgfipvefvyei----------vnnspnhveevqknalkevlkTTDLVITASFkddgsatkvlneelcsl 892  Tetrahymena ther...
AAO35484   194 Relgtkgvkvnllsr------------------------sitsdkeelikiikETDILVDATTrddtskyivs-neligy 248  Clostridium teta...
CBH20638   194 Keakakgvlinmlpr------------------------nitsdreemikilkRTDILVDASTrdnpyeyivd-nellgn 248  Clostridium stic...
Feature 1               #                                        ###                           
1PJB_A     257 mrtGSVIVDVAVdqggcvetlhp---------tshtqptyevfGVVHYGVPNMpga----------------------vp 305  Phormidium lapideum
3UHA_A     269 nrrLRTVVDVSAdttnphnpipiytvatvfnkptvlvpttagpKLSVISIDHLpsl----------------------lp 326  Saccharomyces ce...
1NM5_A     284 mkpGSVIIDLAVeaggncpls-------------epgkivvkhGVKIVGHTNVpsr----------------------va 328  Rhodospirillum r...
2VHW_A     258 mkpGAVLVDIAIdqggcfegsrp---------ttydhptfavhDTLFYCVANMpas----------------------vp 306  Mycobacterium tu...
1SAY_A     257 mrtGSVIVDVAVdqggcvetlhp---------tshtqptyevfGVVHYGVPNMpga----------------------vp 305  Phormidium lapideum
2QRJ_A     290 nrrLRTVVDVSAdttnphnpipiytvatvfnkptvlvpttagpKLSVISIDHLpsl----------------------lp 347  baker's yeast
2QRL_A     290 nrrLRTVVDVSAdttnphnpipiytvatvfnkptvlvpttagpKLSVISIDHLpsl----------------------lp 347  baker's yeast
1NM5_B     284 mkpGSVIIDLAVeaggncpls-------------epgkivvkhGVKIVGHTNVpsr----------------------va 328  Rhodospirillum r...
1PJC_A     257 mrtGSVIVDVAVdqggcvetlhp---------tshtqptyevfGVVHYGVPNMpga----------------------vp 305  Phormidium lapideum
ADX67668   220 mkkGALIIDVSCdrnggietcip---------ttmdnptyevdGIVHYAVDHTpsi----------------------fy 268  Weeksella virosa...
EAS01032   893 lrrGSVIVDLAAekggntsltq-----------ldkvnhdvnlGIHVIGYSFGsycqklnrqs-------selhslsinh 954  Tetrahymena ther...
AAO35484   249 lksHAIILDLTAdpyltdvnpiqv-------kavegiptgtldKPVIYEEDEMyktipegvisknrrivvgcnawpgvkp 321  Clostridium teta...
CBH20638   249 lkkEAIILDLTAdpylvdeegiqv-------kaiegiptgtldKYVIYKDDKEyydipdtvntsnrrtvvscdawpgvkp 321  Clostridium stic...
Feature 1                         
1PJB_A     306 WTATQALNNSTLPYVVKLA 324  Phormidium lapideum
3UHA_A     327 REASEFFSHDLLPSLELLP 345  Saccharomyces cerevisiae S288c
1NM5_A     329 ADASPLFAKNLLNFLTPHV 347  Rhodospirillum rubrum
2VHW_A     307 KTSTYALTNATMPYVLELA 325  Mycobacterium tuberculosis
1SAY_A     306 WTATQALNNSTLPYVVKLA 324  Phormidium lapideum
2QRJ_A     348 REASEFFSHDLLPSLELLP 366  baker's yeast
2QRL_A     348 REASEFFSHDLLPSLELLP 366  baker's yeast
1NM5_B     329 ADASPLFAKNLLNFLTPHV 347  Rhodospirillum rubrum
1PJC_A     306 WTATQALNNSTLPYVVKLA 324  Phormidium lapideum
ADX67668   269 KTISRSLSKEVAKTIDFLI 287  Weeksella virosa DSM 16922
EAS01032   955 LFNQIFLNKNLELGLVDLQ 973  Tetrahymena thermophila
AAO35484   322 EECMNLYGIQLFPIIQKLI 340  Clostridium tetani E88
CBH20638   322 RECMELYAVQMLPLITKLL 340  Clostridium sticklandii DSM 519

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