1IW7,3LU0,4G7O


Conserved Protein Domain Family
RNAP_beta'_N

?
cd01609: RNAP_beta'_N 
Click on image for an interactive view with Cn3D
Largest subunit (beta') of bacterial DNA-dependent RNA polymerase (RNAP), N-terminal domain
Beta' is the largest subunit of bacterial DNA-dependent RNA polymerase (RNAP). This family also includes the eukaryotic plastid-encoded RNAP beta' subunit. Bacterial RNAP is a large multi-subunit complex responsible for the synthesis of all RNAs in the cell. Structure studies suggest that RNA polymerase complexes from different organisms share a crab-claw-shaped structure with two "pincers" defining a central cleft. Beta' and beta, the largest and the second largest subunits of bacterial RNAP, each makes up one pincer and part of the base of the cleft. Beta' contains part of the active site and binds two zinc ions that have a structural role in the formation of the active polymerase.
Statistics
?
PSSM-Id: 259845
Aligned: 54 rows
Threshold Bit Score: 918.064
Created: 1-Jun-2005
Updated: 2-Oct-2020
Structure
?
Program:
Drawing:
Aligned Rows:
 
Conserved site includes 16 residues -Click on image for an interactive view with Cn3D
Feature 1:active site region [active site]
Evidence:
  • Structure:4G7O, Thermus thermophilus B' active site region, contacts at 4.0 A
  • Comment:A complex active site region of DNA-dependent RNA polymerases mainly formed by the two largest subunits that includes Mg binding site, Bridge Helix, Switch and Funnel domains

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                      
1IW7_D       3 KEVRKVRIALASPEKIRSWSYGEVEKPETINYRTLKPERDGLFDERIFGPIKDYEC-ACG-KYKRq-----RFEGKVCER 75   Thermus thermoph...
4G7O_D       3 KEVRKVRIALASPEKIRSWSYGEVEKPETINYRTLKPERDGLFDERIFGPIKDYEC-ACG-KYKRq-----RFEGKVCER 75   Thermus thermoph...
CAK98321     7 KNNRMIKIGLANPDDIRSWSFGEVKKPETINYKTLKPERDGLFDEKIFGPTKNFEC-ACG-KYKKs-----KNKGKICER 79   Spiroplasma citri
CBK88939     4 NNFASIQVRLASPETILKWSHGEVTKPETINYRSQKAERDGLFCERIFGPTKDWEC-ACG-KYKKv-----RFKGVVCDR 76   Eubacterium cyli...
EME28514  1156 LAPPEKLLKLGEHALPNGQIVGEVNSTETINYKTLKPEMGGLFCERIFGPVKNWEC-HCG-KYKRf-----RAKNLVCER 1228 Galdieria sulphu...
EKD65195    13 LDFKSLKILLASKDDILSWSYGEVTKPETINYRTLRPEKDGLFDERIFGPTKDWEC-YCG-KYKRi-----RYRGIICDK 85   uncultured bacte...
CCE66908  1375 LSINGVQISITSPEYLLSLSRGEVKSSETINYKTFKPEKGGLFCEAIFGPVKDYEC-SCG-KYKRv-----RFRGKYCEK 1447 Candidatus Mycop...
NP_326376   13 EKILKVSLSLATKEDVLEWSHGEVTKPETINYKSYKPERHGLFDELIFGPATDYKCpICGkKYKKsnegltCNNTPQCEI 92   Mycoplasma pulmo...
P47582      15 KNIKAIKLSIASNDTILNWSEGEVTKAETINYKSLKPEPGGLFDEAIFGPVKDYEC-ACG-KFKKi-----KYRGVRCDR 87   Mycoplasma genit...
EKE13720     7 VDFSGLRITFASPETIIKWSHGEVIKPETINYRTFRAEKDGLFDERIFGPTKDYEC-YCG-KYKRm-----RYKGIVCDR 79   uncultured bacte...
Feature 1                                       #                                              
1IW7_D      76 CGVEVTKSIVRRYRMGHIELATPAAHIWFVKDVPSKIGTLLDLSATELEQVLYFskyivldpkgailngvpvekrqlltd 155  Thermus thermoph...
4G7O_D      76 CGVEVTKSIVRRYRMGHIELATPAAHIWFVKDVPSKIGTLLDLSATELEQVLYFskyivldpkgailngvpvekrqlltd 155  Thermus thermoph...
CAK98321    80 CGVEITEAIVRRERMGHIELEEPVTHIWMLKAAPSRIALILDMKTKELEEVVYFvsyivldagdakslkqkmvldlgnak 159  Spiroplasma citri
CBK88939    77 CGVEITKASVRRERMGHIHLAAPVAHIWYLRGIPSRMALLLDVTPKQLEEVVYFvsyivtdpkdtdlgykqilsereyre 156  Eubacterium cyli...
EME28514  1229 CGVEVTESKVRRYRMGYINLSTPVTHIWYIKGLPSYLAIILDMRPKDIEQVVYYnsyiviniknkklklsngrlieersl 1308 Galdieria sulphu...
EKD65195    86 CGVEVTLSRVRRERMGHVALATPISHVWFFKSSSSPLSLVLDISQKNLESVIYYvsylvveiddkkkkeafelfekkved 165  uncultured bacte...
CCE66908  1448 CGVCITESIVRREWMGHISLACPIAHIWMIKELPLPSKISLMLGIKYKSIEEIVyfvsyvvievsdigfnhqnlfqksei 1527 Candidatus Mycop...
NP_326376   93 EKPEILPKISRRSRMGHIALQTPVVHFWFFKIDNSIISKLLVLRVGESNEYVSKndleniiyykshivldngglkslpkn 172  Mycoplasma pulmo...
P47582      88 CGVWVTESIVRRERMGHIALVSPVAHIWMSKELPSPSKISLVLNISYKEVEQVLyfvnyivldtgkikddkimpfkfkev 167  Mycoplasma genit...
EKE13720    80 CGVEITTSAVRRERMGHIKLASPIAHIWYFKGTSSTLSIILDVPPQALERIIYYalylvkevdkenqkktlktieqfqkd 159  uncultured bacte...
Feature 1                                                                                      
1IW7_D     156 eeyrelrygkqetyplppgvdalvkdgeevvkgqelapgvvsrldgvalyrfprrvrveyvkkeraglrlplaawvekea 235  Thermus thermoph...
4G7O_D     156 eeyrelrygkqetyplppgvdalvkdgeevvkgqelapgvvsrldgvalyrfprrvrveyvkkeraglrlplaawvekea 235  Thermus thermoph...
CAK98321   160 tsaqtrqrltktlreildtlepdtiayeagetmiedlknt---------------------------------------- 199  Spiroplasma citri
CBK88939   157 nmaiygagsftaqtg----------------------------------------------------------------- 171  Eubacterium cyli...
EME28514  1309 lnekeweeledkiylkdselesnennetcdeis----------------------------------------------- 1341 Galdieria sulphu...
EKD65195   166 kklqhkeemkreekeisqdierrkkevkarkspreqqalieqelellkrqklaslseryai------------------- 226  uncultured bacte...
CCE66908  1528 vnvsdqdsplrslyklrrllrlicedierkepegkeamtyqqgrayykal------------------------------ 1577 Candidatus Mycop...
NP_326376  173 kiininnaaqiykdalielrelnlndadaleiidgtinhlndivgskvg------------------------------- 221  Mycoplasma pulmo...
P47582     168 ldltgkgslstrqkmrrvigyifrnlikskssedyrkgkifyeslk---------------------------------- 213  Mycoplasma genit...
EKE13720   160 elkkieedfvkkeeeinlnfekqyqqlekkiahreqweiakqevefkkreqlkllsneqtd------------------- 220  uncultured bacte...
Feature 1                                                                                      
1IW7_D     236 ykpgeilaelpepylfraeeegvvelkeleegaflvlrredepvatyflpvgmtplvvhgeivekgqplaeakgllrmpr 315  Thermus thermoph...
4G7O_D     236 ykpgeilaelpepylfraeeegvvelkeleegaflvlrredepvatyflpvgmtplvvhgeivekgqplaeakgllrmpr 315  Thermus thermoph...
CAK98321       --------------------------------------------------------------------------------      Spiroplasma citri
CBK88939       --------------------------------------------------------------------------------      Eubacterium cyli...
EME28514       --------------------------------------------------------------------------------      Galdieria sulphu...
EKD65195       --------------------------------------------------------------------------------      uncultured bacte...
CCE66908       --------------------------------------------------------------------------------      Candidatus Mycop...
NP_326376      --------------------------------------------------------------------------------      Mycoplasma pulmo...
P47582         --------------------------------------------------------------------------------      Mycoplasma genit...
EKE13720       --------------------------------------------------------------------------------      uncultured bacte...
Feature 1                                                                                      
1IW7_D     316 qvraaqveaeeegetvyltlflewtepkdyrvqphmnvvvpegarveagdkivaaidpeeeviaeaegvvhlhepasilv 395  Thermus thermoph...
4G7O_D     316 qvraaqveaeeegetvyltlflewtepkdyrvqphmnvvvpegarveagdkivaaidpeeeviaeaegvvhlhepasilv 395  Thermus thermoph...
CAK98321       --------------------------------------------------------------------------------      Spiroplasma citri
CBK88939       --------------------------------------------------------------------------------      Eubacterium cyli...
EME28514       --------------------------------------------------------------------------------      Galdieria sulphu...
EKD65195       --------------------------------------------------------------------------------      uncultured bacte...
CCE66908       --------------------------------------------------------------------------------      Candidatus Mycop...
NP_326376      --------------------------------------------------------------------------------      Mycoplasma pulmo...
P47582         --------------------------------------------------------------------------------      Mycoplasma genit...
EKE13720       --------------------------------------------------------------------------------      uncultured bacte...
Feature 1                                                                                      
1IW7_D     396 vkarvypfeddvevstgdrvapgdvladggkvksdvygrvevdlvrnvvrvvesydidarmgaeaiqqllkeldlealek 475  Thermus thermoph...
4G7O_D     396 vkarvypfeddvevstgdrvapgdvladggkvksdvygrvevdlvrnvvrvvesydidarmgaeaiqqllkeldlealek 475  Thermus thermoph...
CAK98321   200 -------------------------------------slpfsmdecaqfinrhtnarfgigaeavevllknlniddeiek 242  Spiroplasma citri
CBK88939   172 --------------------------------------------------------------aeavlrllqdvdleqeya 189  Eubacterium cyli...
EME28514  1342 --------------------------------------------apeidaekaieieigigaeaikklltnlnldieeek 1377 Galdieria sulphu...
EKD65195   227 ---------------enkrqeevfdvilrllkslrvgtvisedeyfkileyeipefftikagtegildllnkidlsslii 291  uncultured bacte...
CCE66908  1578 ---------------------------aysnlpfsladvfeyiykfsgikistgaeaiyellkkvdldsleyalqkqlkk 1630 Candidatus Mycop...
NP_326376  222 ----------------------------ndygvdfyelnevieeyssakiqtgskaiefllenidleeeqrkikskikei 273  Mycoplasma pulmo...
P47582     214 -------------------------------nsslpfslndafnyikkytgfrvgigaeailellnkidlnlefsrlnda 262  Mycoplasma genit...
EKE13720   221 ---------------tktkksayfervakiarsirpfdvieeddylffkendvadflsvgmgsevlyeilsnfdlakqya 285  uncultured bacte...
Feature 1                                                                                      
1IW7_D     476 elleemkhpsrarrakarkrleVVRAFLDSGNRPEWMILEAVPVLPPDLRPMVqVDGGRFATSDLNDLYRRLINRNNRLK 555  Thermus thermoph...
4G7O_D     476 elleemkhpsrarrakarkrleVVRAFLDSGNRPEWMILEAVPVLPPDLRPMVqVDGGRFATSDLNDLYRRLINRNNRLK 555  Thermus thermoph...
CAK98321   243 ikqdlkdkktqldqnklmkrleVLDSLKKSGSRPEWMILRAVPVIPPDIRPIIqLDGGRFTTSEINDLYRRIIIRNERLK 322  Spiroplasma citri
CBK88939   190 dvqealekaqgekrkklikrldTINAFRKSDNKPEWMILTNIPVIPPDLRPMLqLDGGRFATSDLNDLYRRVITRNNRLR 269  Eubacterium cyli...
EME28514  1378 lrksisyiddqlelakairrlrLLQNLISSQTNPAWTVLEVLPVLPPDLRPMIqLDGGRFASSDLNDLYRKVIHRNNRLV 1457 Galdieria sulphu...
EKD65195   292 alrketerakgqkylkilkrlrLVESMRRANISPSHMVFSVLPVIPPDLRPMVqLSGGRFATSDLNDLYRRVINRNNRLK 371  uncultured bacte...
CCE66908  1631 dsagdelnygdsrikrtlarleVVRWFKQSGNKPEWMILRNLLVLPPNLRPIVqLDAGRFTTSDLNLFYRRIIIRNERLK 1710 Candidatus Mycop...
NP_326376  274 nnlektsssrkqdlsklykrlqVVESFINSGQKPTSMLIYNLPVIPAELRPLVqLDGGRHSTSDINELYRRIIIRNNRLR 353  Mycoplasma pulmo...
P47582     263 lrkakkdsvedakvkkilrqleTISWFRNSKLHPKNMILHTVPVIPPDIRPIIqLDGAKFTTSDINNFYRRVIIRNDRLR 342  Mycoplasma genit...
EKE13720   286 rtlemlneskgekrnkllkkarVLEAFIKAKIDPKWIVLTVLPVIPPDLRPVVqLPGGKFATSDLNDFYRRVINRNNRLK 365  uncultured bacte...
Feature 1                                     #                        #    #      #     #     
1IW7_D     556 KLLaq-gAPEIIIRNEKRMLQEAVDALLDNGRRGAPVtnp-gsdRPLRSLTDILSGKQGRFRQNLLGKRVDYSGRSVIVV 633  Thermus thermoph...
4G7O_D     556 KLLaq-gAPEIIIRNEKRMLQEAVDALLDNGRRGAPVtnp-gsdRPLRSLTDILSGKQGRFRQNLLGKRVDYSGRSVIVV 633  Thermus thermoph...
CAK98321   323 KVKam-gAPSVIVNNEKRMLQEAVDALLDNERKARPVtgk--dkRPLKSLTSILKGKQGRFRQNLLGKRVDYSGRSVIAI 399  Spiroplasma citri
CBK88939   270 KLLel-gTPNIIVQNEKRMLQEAVDALIDNGRRSKPItga--ggRALKSLSHSLKGKQGRFRQNLLGKRVDFSGRSVIAV 346  Eubacterium cyli...
EME28514  1458 KLQei-lAPEIIIRNEKRMLQESVDALIDNGRRGKTVvga--nnRPLKSLSDILEGKQGRFRQNLLGKRVDYSGRSVIVV 1534 Galdieria sulphu...
EKD65195   372 HLVsl-gAPEIILKNERRMLQEAVDSLIDSSQRGGQMv-----sSPLRSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVV 445  uncultured bacte...
CCE66908  1711 RILsl-nVTSIIANNEKRMLQEAVDSLIDNASRKKPLvak--dkHLLKSLTDHLKGKQGLFRQNLLGKRVDYSGRSVVVV 1787 Candidatus Mycop...
NP_326376  354 KWIel-nAPTLITQNELRMIQEAVDALIDNSKKKPKPvts-kdnRNLKSISDALTGKKGRFRQNLLGKRVDYSGRSVIVV 431  Mycoplasma pulmo...
P47582     343 RILedgtVPSIVVNNEKRLLQESVDALFDNSSRHKPSlsk--dkRSLKSLTDRLKGKQGLFRHNLLGKRVDYSGRSVIVV 420  Mycoplasma genit...
EKE13720   366 QLIdl-gAPEIILRNEKRMLQEAVDSLIDLQKSRGKSrstgsntKVQKSLSDILRGKQGRFRQNLLGKRVDYSGRSTIIV 444  uncultured bacte...
Feature 1                                                                                      
1IW7_D     634 GPQLKLHQCGLPKRMALELFKPFLLKKMEEK--------------GIAPNVKAArrmlerqrdikdeVWDALEEVIHGKV 699  Thermus thermoph...
4G7O_D     634 GPQLKLHQCGLPKRMALELFKPFLLKKMEEK--------------GIAPNVKAArrmlerqrdikdeVWDALEEVIHGKV 699  Thermus thermoph...
CAK98321   400 GPDLKMYQCGLPRDMAITLFKPFVISKLVKDgl----------aaNIKVAEKLIlnq-------ddkVWEVLEEVIKSRP 462  Spiroplasma citri
CBK88939   347 GPDLMMYQCGIPREMAINLFKPFIINEIVNQql----------aaNPKNAEKLIerr-------dprIWDVVEKVIDGYP 409  Eubacterium cyli...
EME28514  1535 DPTLKLYQCGLPKEMAIILFEPFIINALIHQgl----------vyNIKAAKKLIqrn-------ehvVMEILEEVIQGHP 1597 Galdieria sulphu...
EKD65195   446 GPQLSLSQCGLPKEMALEMFKPFVLREVIIRgf----------apNIKSAKRFIekk-------speVFDILEEITRNHP 508  uncultured bacte...
CCE66908  1788 GPELKLHQTGLPILIVLKLFKPFIIRELIRTvtdeitgertqlapNIRIAEEMIenq-------sdvIWPIVHRVMRERP 1860 Candidatus Mycop...
NP_326376  432 GPELKMNQVGIPREMAAKLFEPWIIKELIDQei----------tlSVKSARKLIdnl-------npiIWPHVAKVIQGRP 494  Mycoplasma pulmo...
P47582     421 GPELKMYEVGIPALMILKLFKPFIIHGLINKfdengne-irpiaaSIRQAEDMIknq-------ddlIWGIVYDVIKDRP 492  Mycoplasma genit...
EKE13720   445 GPELKLNQCGLPREMALELFKPYLLHEIIIRgl----------apNIKSAKLFLekr-------dpvVYDILEEITKDHP 507  uncultured bacte...
Feature 1          ###                                # # #                                    
1IW7_D     700 VLLNRAPTLHRLGIQAFQPVLVEGQSIQLHPLVCEAFNADFDGDQMAVHVPLSSFAQAEARIQMLSAHNLLSPASGEPLA 779  Thermus thermoph...
4G7O_D     700 VLLNRAPTLHRLGIQAFQPVLVEGQSIQLHPLVCEAFNADFDGDQMAVHVPLSSFAQAEARIQMLSAHNLLSPASGEPLA 779  Thermus thermoph...
CAK98321   463 VLLNRAPTLHRLGIQAFEPKLVKGKAIRLHPLVTTAFNADFDGDQMAVHVPITEEAVAEARSLMLGSRNILGPKDGKPIV 542  Spiroplasma citri
CBK88939   410 VLMNRAPTLHRLGIQAFLPKLVEGRAMRLHPLVCTAFNADFDGDQMAIHVPLSEEARAEALVMMLGSHNILGPKDGKPIV 489  Eubacterium cyli...
EME28514  1598 ILLNRAPTLHRLGIQAFEPVIVEGRAIKLHPLVCPAFNADFDGDQMAVHIPLSIEAQTEARILMFAPHNFLSPATGDPII 1677 Galdieria sulphu...
EKD65195   509 VLLNRAPTLHKLGIQAFYPVLIEGSAIQLHPCVCAGYNADFDGDQMAVHIPLSSKAQEEAINLMMPKHNLLKPADGSVIT 588  uncultured bacte...
CCE66908  1861 VLLNRAPTLHSLGIQAFEPVLVDGKAICLHPLVTTAFNADFDGDQMAVHLPLSDEAVKEARAMLLAPWHVLAPKNGQPIL 1940 Candidatus Mycop...
NP_326376  495 VLLNRAPTLHRLSIQAFEPVLIRGKAIKLHPLVTTAFNADFDGDQMAVHVPISDEAVREAKELLFANRNILGPKDGEPII 574  Mycoplasma pulmo...
P47582     493 VLLNRAPTLHRLGIQAFEPRIVDGKAIRLHPLVTTAFNADFDGDQMAVHVPLSENAVNEARAVLLASKHILGLKDGRPIV 572  Mycoplasma genit...
EKE13720   508 VLLNRAPTLHKLSILGFYPVLTDDHAIKLHPAVCSGYNADFDGDAMGVFLPLSSKAIDEVKQRMFPYHNLLKPSDGSPVV 587  uncultured bacte...
Feature 1                                                                                      
1IW7_D     780 KPSRDIILGLYYITQVRKEKKGAGlefatpeealaahergevalnapikvagretsvg----rlkyvfanpdeallavah 855  Thermus thermoph...
4G7O_D     780 KPSRDIILGLYYITQVRKEKKGAGlefatpeealaahergevalnapikvagretsvg----rlkyvfanpdeallavah 855  Thermus thermoph...
CAK98321   543 TPTQDMVLGNYYLTYEEKGQLGEGtifkdlneaviayetgavalha-----------------------------lvaip 593  Spiroplasma citri
CBK88939   490 TPGQDMVMGNFYLTMEETKQELLEesqhymdadcpkeaaawkryalneghvysdvdev----mlayqtgqvhlhsrialp 565  Eubacterium cyli...
EME28514  1678 TPSQDMVLGCYYLTADNPYSQNINenyfasfddaliayennlitlhsyiwvrfdgiiddefkenlilakkissncylyiy 1757 Galdieria sulphu...
EKD65195   589 LPNKEMAVGIYYLTSIDESSAKKDlpyfkdtkeallahal---------------------------------------- 628  uncultured bacte...
CCE66908  1941 MPSQDMVLGLYYLTNTRKGVKGEGklcssqeeviylyrtggldl--------------------------------nahi 1988 Candidatus Mycop...
NP_326376  575 NPSQDMILGIYYLTIEIAGAKGEAkvfqdvnsmlrayeegsvslh------------------------------arvai 624  Mycoplasma pulmo...
P47582     573 TPTQDMVLGNYYLTTERKGQLGEGiifstvyearaayesqkvhl--------------------------------haiv 620  Mycoplasma genit...
EKE13720   588 LPNKEMALGCYYLTTIDSHLDTEKnedlkffateneamrfqa-------------------------------------i 630  uncultured bacte...
Feature 1                                                                                      
1IW7_D     856 givdlqdvvtvrymgkRLETSPGRILFARIVAEAVEdekvaw-------------------------------------- 897  Thermus thermoph...
4G7O_D     856 givdlqdvvtvrymgkRLETSPGRILFARIVAEAVEdekvaw-------------------------------------- 897  Thermus thermoph...
CAK98321   594 vagfvnkkfnseqmkdYIITTPGKIIFNQIFKEEFPylnepnienltalpars--------------------------- 646  Spiroplasma citri
CBK88939   566 vkgmnktsfnpvhendYLITTVGKIIFNDMFPADFPylnevskenfeetpaky--------------------------- 618  Eubacterium cyli...
EME28514  1758 pnrqvkeyldnkmkiqYVRTTVGRILFNTTITNTMTdniisyl------------------------------------- 1800 Galdieria sulphu...
EKD65195   629 sfiklrepiyvrianeNIKTSVGRVILNEYLPESLGf------------------------------------------- 665  uncultured bacte...
CCE66908  1989 aipttayakkkwikegMIITTPGKVIFNSILPPDYRfvnesggsflseediv---------------------------- 2040 Candidatus Mycop...
NP_326376  625 pfkklqktfnlkgdkgYIFSTVGKFIFNQAFPENFPfifdssvssisdaqeytkkyyipyglniketiqntpindalskk 704  Mycoplasma pulmo...
P47582     621 gistkafpnkkfacqgTLITTVGKIIFNDVLGNNVPyindgefdenacpekfi--------------------------- 673  Mycoplasma genit...
EKE13720   631 gkiklrqpinvgvggkIIKTTVGRIIFNQALPTQLRf------------------------------------------- 667  uncultured bacte...
Feature 1                                                                                      
1IW7_D     898 ------------------------------------------------------------------------------el 899  Thermus thermoph...
4G7O_D     898 ------------------------------------------------------------------------------el 899  Thermus thermoph...
CAK98321   647 ------------------------------------------------------------------likdnvnlveylat 660  Spiroplasma citri
CBK88939   619 ------------------------------------------------------------------fvkpgedikayieq 632  Eubacterium cyli...
EME28514  1801 ----------------------------------------------------------------------------drnl 1804 Galdieria sulphu...
EKD65195       --------------------------------------------------------------------------------      uncultured bacte...
CCE66908  2041 --------------------------------------------------------------------pfgekvdskisa 2052 Candidatus Mycop...
NP_326376  705 dlskiirtifdkyvpvltkedvasvindvnhtnykdtstkfanlvttnktaleyihaeslskfttkhfvdvnkklslktp 784  Mycoplasma pulmo...
P47582     674 -------------------------------------------------------------------vkqgedvrqsilk 686  Mycoplasma genit...
EKE13720       --------------------------------------------------------------------------------      uncultured bacte...
Feature 1                                                                                      
1IW7_D     900 iqlDVPQEKNSLKDLVYQAFLRLGMEKTARLLDALKYYGFTFSTTSGITIGIDDAV--IPEEKKQYLEEADRKLLQIEQA 977  Thermus thermoph...
4G7O_D     900 iqlDVPQEKNSLKDLVYQAFLRLGMEKTARLLDALKYYGFTFSTTSGITIGIDDAV--IPEEKKQYLEEADRKLLQIEQA 977  Thermus thermoph...
CAK98321   661 wkvNPPFKKKDLSNIIDRYFKQYGANKTAEMLDNMKNLGFKYSGKSGVTVSAGDVK--VYDKKHEEFKAADQKVKEINDY 738  Spiroplasma citri
CBK88939   633 lpiVNAVKKKDLGKVIAEVFKRYSVDETAEILDQIKAKGFKYSTVAGITVSLSDIE--VAPNKWEHVDEGREKADQLKRL 710  Eubacterium cyli...
EME28514  1805 iflNRVINKNELKQIIAFFFQKYGITVATKVADELKTLGFHYATKAGLSLSLEDLK--VPVLKRELIDNTDYQIQQTENK 1882 Galdieria sulphu...
EKD65195   666 --iNKSINATGIKNIITEAIATVSADEIEKLTDSIKSIGFYGATVSGISISVFDNQ--MIGDRNKFIAEAEKKVLEIEND 741  uncultured bacte...
CCE66908  2053 ieeKLPFNKGVIQTIIEEVFGAYPIEVTATMLDNIKSLGFEYSTKSCVTISPFDIPrfKDSFKSDLIEAAEAKVREQREF 2132 Candidatus Mycop...
NP_326376  785 gnpNQPIWEVDQYVELLENVWFDYVNIVASVLDEIKDLGFKFSTKSGTSISIHDIE--VSDNKKERIKEGDDYTSELKSM 862  Mycoplasma pulmo...
P47582     687 hqiIPAFSKKVISKLIDLLYLLLEFKDLPKTLDNIKALGFKYSTFSSTTVSVFDIP--KYTNKQNYFDSADQQVLKYKQF 764  Mycoplasma genit...
EKE13720   668 --vNDEVKASDLKNIVVAAMKIFENEKVGELIDKLKEIGFWASTIAGGLSLSIFDCq-IIPEKTKIISQTEDEIKKITKN 744  uncultured bacte...
Feature 1                                                                                      
1IW7_D     978 YEMGFLTDrERYDQILQLWTETTEKVTQAVFKNFEen-yPFNPLYVMAQSGARGNPQQIRQLCGLRGLMQKPSGET---- 1052 Thermus thermoph...
4G7O_D     978 YEMGFLTDrERYDQILQLWTETTEKVTQAVFKNFEen-yPFNPLYVMAQSGARGNPQQIRQLCGLRGLMQKPSGET---- 1052 Thermus thermoph...
CAK98321   739 FKMGMLTSrEKQHRIISVWSKVKDNIQTELEHVLRe--dPKNPIFMMADSGARGNVSNFTQLVGMRGLMNNPKGDI---- 812  Spiroplasma citri
CBK88939   711 QRKGMLTMeEWERHLNKLWADVKDDIVGELMANLP----RKNPINMMATSGARGNTSNFTQLAGMRGLMAKPGSGKgrsg 786  Eubacterium cyli...
EME28514  1883 YLRGEITIvERLQKVVDTWNNASEDLKNELVNYFIhr-dPLNPIYMMAFSGARGNISQVRQLVGMRGLMADPQGQI---- 1957 Galdieria sulphu...
EKD65195   742 FQKGLITNdEKKRLSNDVWLKTTDRVADLTWDGLEs---ENAIKIIIDSEGARAGKEQLKQLSAIRGLILDPLGKI---- 814  uncultured bacte...
CCE66908  2133 FELGMINDdERYQNVISLWNEVKDKVSDKVRDWFRskefRDNPMAIMERSGARGSLSNFVQLSGMRGLMNRSYNYGqnvd 2212 Candidatus Mycop...
NP_326376  863 YREGLLTDdERYSLTINKWSEVKDNIQNDLKKIVKn--nPLNPIFIMMNSGARSNMANYVQLAGIRGLMTNNTKILksda 940  Mycoplasma pulmo...
P47582     765 YNKGLLTDdERYKRVVKLWNNVKEKVSDEIQNLIKqeqyRDNSIVVMADSGARGNISNFTQLFGMRGLMSKSFNYErnnq 844  Mycoplasma genit...
EKE13720   745 FEQGLLTSeEKRRYSNKLWIDVTEKLADKTWNALDe---ENPVKIIIKSGGARASKEQLKQLAAMKGLVVDPLGKI---- 817  uncultured bacte...
Feature 1                                                  ##  ##                  
1IW7_D    1053 ---------FEVPVRSSFREGLTVLEYFISSHGARKGGADTALRTADSGYLTRKLVDVTHEIVVREAD 1111 Thermus thermophilus
4G7O_D    1053 ---------FEVPVRSSFREGLTVLEYFISSHGARKGGADTALRTADSGYLTRKLVDVTHEIVVREAD 1111 Thermus thermophilus HB8
CAK98321   813 ---------IELPIKSSFREGLTVSEFFISTHGARKGMADVALKTADSGYLTRRLVDVSQEIIITMKD 871  Spiroplasma citri
CBK88939   787 e---yvpsiIEVPIYSCFREGLNVSEFFISTHGVRKGLTDTALKTAESGYLTRRLVDVAQDVIVKEDD 851  Eubacterium cylindroides T2-87
EME28514  1958 ---------IDLPIKSNFREGLNSTEYIISSYGARKGIVDIALRTADSGYLTRRLVDVAQDYIIKSRD 2016 Galdieria sulphuraria
EKD65195   815 ---------VELPIKGNFREGLSIFEYVASARGSRKGLTDSALKTANAGYLTRRLVDASHDVIVRGQD 873  uncultured bacterium
CCE66908  2213 se--ivrdtIEVPIKHSFIEGLNMIEYFNSSYGSRKSMADTAVKTAKSGYMTRKLVDASQEVIVKELD 2278 Candidatus Mycoplasma haemom...
NP_326376  941 enervvrstVEIPVKSSFLDGLTAYEFYSSTHGARKGLTDTALNTAKSGYLTRRLVDVAQGIVVTEKD 1008 Mycoplasma pulmonis UAB CTIP
P47582     845 sk--iikdtIEVPIKHSFFEGLTINEYFNSSYGARKGMTDTAMKTAKSGYMTRKLVDATHELIINHDD 910  Mycoplasma genitalium G37
EKE13720   818 ---------IEVPTKSNYRQGLSIFEYVISARGARKGLTDSALKTADAGYLTRRLVDTSHDMIVREED 876  uncultured bacterium

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap