Conserved Protein Domain Family
RHOD_YbbB

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cd01520: RHOD_YbbB 
Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Statistics
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PSSM-Id: 238778
Aligned: 11 rows
Threshold Bit Score: 165.16
Created: 29-Jun-2004
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
active site
Feature 1:active site residue [active site]
Evidence:
  • Comment:active site is based on homology to other members of the Rhodanese Homology Domain superfamily

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                       
NP_455108     5 QKAQDYRALll-adTPLIDVRAPIEFEQGAMPGAINLPLMMDDERAAVGTCYKRQGaDAALALGHRLVCGDIRQqrleaw 83  Salmonella enter...
NP_893043     3 SRKEELEKFrk-lnGPLIDVRSPGEYYKGHMPNSINIPLFDNEERSIVGTVYKNYGrQEAVIKGLEFLAVKIENiinklf 81  Prochlorococcus ...
NP_562986     5 ISYEEIYGHed--eYIFIDVRSQKEAFEEPMIGSVNIPVLLNEERDVVGTLYVRESaEAAKEQGIEFISRRLPEifkqvq 82  Clostridium perf...
ZP_00005268   3 YRATDLSQLiehgfDDVIDVRSPAEWQEDRVPGAINLPVLDNEERARVGTIYKQVNpFSARKIGAALVARNAARhieevl 82  Rhodobacter spha...
Q60359       94 ITVSELLELikkedVIIVDTRSPREFKEETLPGAINIPLFLDDEHALIGKTYKQESrEKAIEIATDIVEKSLKRilneak 173 Methanocaldococc...
YP_009790     5 IDASTFLALrd-tgLPVLDARSPSEHARGAIPGALNLPVLDDAQREAVGTLYARSGrEAAVHLALQLVGPHLSAmlaraq 83  Desulfovibrio vu...
NP_897159     7 AQHLTIDQLrq-lrGPLVDVRSPSEFDKGHWPGAINLPLFSDAERAEVGTSYKQQGrLPAIHLGLSITGPKLSAlagele 85  Synechococcus sp...
ZP_00263673   3 IDVTDYRDIfl-ndRPLMDARAPVEFHKGAFPGAVNLPLMNDIERQRVGTCYKHHGqQAAIELGHQLVSGPVKEeriqaw 81  Pseudomonas fluo...
NP_908105     5 LTLERFLSHrs-afSLVIDVRSPHEYLESHLPGALNLPVLSDLEHERVGTLYKESP-FEARILGASLICANIASalswlk 82  Wolinella succin...
NP_875164     7 PASYSLNKFrn-tnGPLIDIRSPKEFNQGHLPGAKNIPLFNNEERALIGTTYKKKGkQKAINLGLEITTAKLKDlvekll 85  Prochlorococcus ...
NP_840811     6 IGIDDLTALfi-adTPLIDVRAPVEFTQGSLPGAVNLPILNDEERALVGTTYKQQGsEAAIKLGYEMVSGSVKQnrlqqw 84  Nitrosomonas eur...
Feature 1                              #                                    
NP_455108    84 k----------aayqrfPNGYLCCARGGQRSHIVQrWLQET-GIDCPLIEGGYKALRQTA 132 Salmonella enterica subsp. enterica ...
NP_893043    82 evindhqltshnsqfsdPTLKIYCARGGMRSQSLC-WLLEKyNHRSVTLKNGYKSYRKWT 140 Prochlorococcus marinus subsp. pasto...
NP_562986    83 e---------lyrnkhgKKLVIFCARGGMRSGSLH-SLLNSlGINCYKLEGGYKAYRSFM 132 Clostridium perfringens str. 13
ZP_00005268  83 -----------adrpggWRPLVYCWRGGQRSNSFA-MILGQiGWRVEVLEGGYKSWRGLV 130 Rhodobacter sphaeroides
Q60359      174 ------------kldrdKLIVVFCARGGMRSQTMA-LILQLlGFKVKRLIGGFKAFKHAV 220 Methanocaldococcus jannaschii
YP_009790    84 -----------hlcenrHEVLVHCWRGGMRSGSLA-WLLESaGYTVHLLEGGYKAYRAHV 131 Desulfovibrio vulgaris subsp. vulgar...
NP_897159    86 ------------rlrdlGTPRLYCWRGGMRSASMA-WLASQiDLTPTLLIGGYKAYRRWA 132 Synechococcus sp. WH 8102
ZP_00263673  82 a----------efarthPEGYLYCFRGGLRSQIVQqWLKSEaGVDYPRIGGGYKALRGFL 131 Pseudomonas fluorescens PfO-1
NP_908105    83 -----------dslhpsQKVLIYCARGGQRSLSLA-LILSSiGYQIARLIGGYKGYRAHV 130 Wolinella succinogenes DSM 1740
NP_875164    86 q---------ekvteenSFLRIYCWRGGLRSSSLG-WLANIlNLNPILLSGGYKNYRKWT 135 Prochlorococcus marinus subsp. marin...
NP_840811    85 l----------dfihqhPRAILYCFRGGKRSQITQqWLRDT-GIDSPLITGGYKRARQFL 133 Nitrosomonas europaea ATCC 19718

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