Conserved Protein Domain Family
Ube1_repeat1

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cd01491: Ube1_repeat1 
Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Statistics
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PSSM-Id: 238768
Aligned: 17 rows
Threshold Bit Score: 380.46
Created: 10-Jan-2006
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
interdomain
Feature 1:interdomain dimer interaction
Evidence:
  • Comment:interaction site between the 2 repeats is based on the homology to other members of the family

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1      # ####### #                     #  ##  #               ## ### #        #        
AAS38878    33 LYSRQRYVLGDFAMSKLSKGDVFLSGLGGVGVEIAKNIILAGIKSITLHDTKEASIYDLSSQFYInpehvDQKLNR--AI 110  Dictyostelium di...
P22515      18 LYSRQLYVLGKEAMLKMQTSNVLILGLKGLGVEIAKNVVLAGVKSMTVFDPEPVQLADLSTQFFLte--kDIGQKR--GD 93   baker's yeast
O94609      19 LYSRQLYVLGHEAMKQMSQSNVLIIGCKGLGVEIAKNVCLAGVKSVTLYDPQPTRIEDLSSQYFLte--dDIGVPR--AK 94   fission yeast
NP_501800  107 LYSRQIYTLGESAMVNLRTASVLISGLGSVGVEIAKNLILGGVRHVTIHDTKLAKWSDLSAQYYLrd--aDVGHNR--AT 182  nematode
NP_568168   74 LHSRQLAVYGRETMRKLFASNVLISGMQGLGVEIAKNIILAGVKSVTLHDENVVELWDLSSNFVFte--eDIGKNR--AL 149  thale cress
NP_701611   47 LYSRQLGTYGFDLMNKLVKLNILIINVKGVGLECAKNLILSGPQSVCIYDNDICDISDIGVNFYIn---eKDVEDK--SC 121  Plasmodium falci...
CAD89959    43 LYSRQRYVLGDTAMQKMAKSHVFLSGMGGLGLEIAKNLVLAGIKAVTIHDTEKCQAWDLGTNFFLse--dDVVNKRnrAE 120  human
NP_910456   42 LHSRQLAVYGRETMRRLFASHVLVSGLNGLGAEIAKNLALAGVKSVTLHDVKNVEMWDLSANFFLse--nDIGKNR--AA 117  Japanese rice
CAF06079    35 LYSRQLYVLGHEAMKRMSASNVLIVGLKGLGVEIAKNVALAGVKSLTLHDPEPAAWADLSAQFFLrp--eDVGKPR--DQ 110  Neurospora crassa
EAK87092    20 LYSRQLYVLGHDAMKRMAASNVLVVGLRGLGAEIAKNVALAGVKSITIFDPTPVSISDLGTQFFLrp--eDASSRVrrDH 97   Ustilago maydis 521
Feature 1          #  ##                                                                      #
AAS38878   111 ISQSHLQELNp-YVKVNTItnlslsdlilnnsNSLLQFK---CIILTes-nLNDQIKINEFCke---ndIKFIVPDCYGL 182  Dictyostelium di...
P22515      94 VTRAKLAELNa-YVPVNVLdsl-------ddvTQLSQFQ---VVVATdtvsLEDKVKINEFChs---sgIRFISSETRGL 159  baker's yeast
O94609      95 VTVSKLAELNq-YVPVSVVde---------lsTEYLKNFk--CVVVTet-sLTKQLEINDFThk---nhIAYIAADSRGL 158  fission yeast
NP_501800  183 SCYERLAELNd-SVNVQVStde--------ltEEFVKTFd--LVVLTda-aRTAQRQIAAWTra---hnRRILITDARGV 247  nematode
NP_568168  150 ASVHKLQELNn-AVAVSTLtgk-------ltkEQLSDFQ---VVVFVdi-sFEKATEIDDYChsh-qppIAFIKADVRGL 216  thale cress
NP_701611  122 RSDAVLKELQelNNYVHIYnykg-----tiekNWLENFD---VVICCdi-nKEDLIKYNNMIrgidkkrIAFLSCNIYGL 192  Plasmodium falci...
CAD89959   121 AVLKHIAELNp-YVHVTSSsvpfn---ettdlSFLDKYQ---CVVLTem-kLPLQKKINDFCrsq-cppIKFISADVHGI 191  human
NP_910456  118 ACVSKLQELNn-AVLVSALtee-------lttDHLSKFQ---AVVFTdi-gLDKAYEFDDYChsh-cppISFIKAEVCGL 184  Japanese rice
CAF06079   111 VTAPRVAELNa-YTPVHIHqsp-------slaDNLSQFDkyqVVVLTnq-hTDLQTIVGEYChs---kgIYFIAVNTHGL 178  Neurospora crassa
EAK87092    98 ATQPRLAELNt-YVPIRVLedne------lnqQILSRFQ---VVVMSda-lYAEQLRINDMTha---ssTHFISAEVRGL 163  Ustilago maydis 521
Feature 1                                                                                      
AAS38878   183 GGWVFNDFGDEFKVYDKNGEKlkevfisnisistqnpnqliincmenhIHGFEENDYIQFKEIIGMDQLNdqskkfkini 262  Dictyostelium di...
P22515     160 FGNTFVDLGDEFTVLDPTGEEprtgmvsdiep------dgtvtmlddnRHGLEDGNFVRFSEVEGLDKLNdgtlfkvevl 233  baker's yeast
O94609     159 FGSIFCDFGENFICTDTDGNEpltgmiasitd------dgvvtmleetRHGLENGDFVKFTEVKGMPGLNdgtprkvevk 232  fission yeast
NP_501800  248 FSYIFNDFGDNFRIDDATGEQvreffiehidk-----ttgevttlenlFHGLEDGDHVTFSEVKGLTEINgceplkitvk 322  nematode
NP_568168  217 FGSLFCDFGPHFTVLDVDGEEphsgiiasvsne----npgfvscvddeRLEFEDGNLVVFSEVEGMTELNdgkprkiknv 292  thale cress
NP_701611  193 CGYIFVDFNKEFICYDSNGEQvkscnvskiske----legkvsfdfdkTSPFEEGDYVQFSNVEGMTEINnkiykiknlk 268  Plasmodium falci...
CAD89959   192 WSRLFCDFGDEFEVLDTTGEEpkeifisnitqa----npgivtcledhPHKLETGQFLTFREINGMTGLNgsiqqitvis 267  human
NP_910456  185 FGTVFCDFGPEFTVLDVDGEDphtgiiasisnd----npalvscvddeRLEFQDGDFVVFSEVHGMAELNdgkprkvkna 260  Japanese rice
CAF06079   179 FGGIFCDFGDNFTVMDTNGENpvngivagide------eglvsaldetRHGLEDGDYVTFSEVEGMEGLNgceprkvtvk 252  Neurospora crassa
EAK87092   164 FGSVFTDFGPKFLCNDPTGEQplsgmivsiase---deeglvttldetRHGLEDGDYVSFTEVQGMDALNdsqprkvtvk 240  Ustilago maydis 521
Feature 1                                                                                      
AAS38878   263 insncfsinlndnsnnnnsnsnidikslppyqRGGIAIQTKsiellkfkslnksmiepeiidfdfmkdsrynhlirhsie 342  Dictyostelium di...
P22515     234 gpfa---------------frigsvkeygeykKGGIFTEVKvprkisfkslkqqlsnpefvfsdfakfdraaqlhlgfqa 298  baker's yeast
O94609     233 gpyt---------------fsigsvkdlgsagYNGVFTQVKvptkisfkslreslkdpeyvypdfgkmmrppqyhiafqa 297  fission yeast
NP_501800  323 nask--------------fnigdfavsfsdykEGGRCRQVKvptsvshvpfekslvepefgiwdyakfeypsqlhalwta 388  nematode
NP_568168  293 kpfs--------------ftleedtssygqymKGGIVTQVKqpkvlnfkplrealkdpgdfllsdfskfdrppllhlafq 358  thale cress
NP_701611  269 kyt----------------feigdtslyseyiKGGICTQVKkhlklnfypyeyicvnplnnenisnneqkhnqndnhfld 332  Plasmodium falci...
CAD89959   268 pfs----------------fsigdttelepylHGGIAVQVKtpktvffeslerqlkhpkclivdfsnpeapleihtamla 331  human
NP_910456  261 rpfs--------------fcieedttkydmyiKGGIVTQIKepkilrfkslrdamrdpgdfllsdfskferspvlhlafq 326  Japanese rice
CAF06079   253 gpyt---------------fsigdvsglgqykKGGLYQQVKmpktiefksitnalkdpefvisdfakfdrpqqlhigfqa 317  Neurospora crassa
EAK87092   241 gpyt---------------ftigstkglgqykQGGIFKQVKmpkeiafkslresgkqpelliadfakfdrpaalhagfqa 305  Ustilago maydis 521
Feature 1                                                                                      
AAS38878   343 ifkernenqlp--------------------------------------refnkddsmefvkivnefnmndyfkfdhlnd 384  Dictyostelium di...
P22515     299 lhqfavrhnge--------------------------------------lprtmndedaneliklvtdlsvqqpevlgeg 340  baker's yeast
O94609     298 lsafadahe------------------------------------------gslprprndidaaeffefckkiastlqfd 335  fission yeast
NP_501800  389 lyafe-------------------------------------------------ekygrspaprstqdaallkelipsgt 419  nematode
NP_568168  359 aldrfssqag----------------------------------------rfpfagseedaqklveiavdineglgdarl 398  thale cress
NP_701611  333 tcnniiyenipqpnsfiisdyakfdmsnhlhysiqalkwyelqnekglpensdedalekiynyavtlnnkdkeekksyav 412  Plasmodium falci...
CAD89959   332 ldqfqeky-------------------------------------------srkpnvgcqqdseellklatsisetleek 368  human
NP_910456  327 aldkfkkeyg----------------------------------------rypapgceqdaqsflkcaadinealtdhkl 366  Japanese rice
CAF06079   318 lhafaksq-------------------------------------------grlprpmndedalvviasakefakqqgvd 354  Neurospora crassa
EAK87092   306 lshfehqng------------------------------------------rlpaprnaqdadlllqltkqivqtcgqdp 343  Ustilago maydis 521
Feature 1                             #   #   #                     #          
AAS38878   385 dqikedqlirisnslrgkICPLTSVIGGFVAQEALKSlTGKFTPLKQWLYIDCF---ELLEQQQ 445  Dictyostelium discoideum
P22515     341 vdvnedlikelsyqargdIPGVVAFFGGLVAQEVLKAcSGKFTPLKQFMYFDSL---ESLPDPK 401  baker's yeast
O94609     336 veldeklikeisyqargdLVAMSAFLGGAVAQEVLKAtTSKFYPLKQYFYFDSL---ESLPSSV 396  fission yeast
NP_501800  420 eeipeklielfsfsasgnLVTVSSVVGGIAAQEAMKGvTHHMTPLKQWLHLDHV---EVLPGDW 480  nematode
NP_568168  399 edvnskllrhlafgsravLNPMAAMFGGIVGQEVVKAcSGKFHPIFQFFYFDSV---ESLPKEP 459  thale cress
NP_701611  413 eqlkkdvvynvcryskshIAPVASFFGGLLAQEVIKF-TGKYMPIYQLLYLDFF---ECISLNE 472  Plasmodium falciparum 3D7
CAD89959   369 pdvnadivhwlswtaqgfLSPLAAAVGGVASQEVLKAvTGKFSPLCQWLYLEAAdivESLGKPE 432  human
NP_910456  367 dtideklfrhfasgsravLNPMAAMFGGIVGQEVVKAcSGKFHPLYQFFYFDSV---ESLPTYP 427  Japanese rice
CAF06079   355 vefddkllkelsyqatgdLNPMAAFFGGLTAQEVLKAvSGKFHPIKQFMYFDAL---EALPTNS 415  Neurospora crassa
EAK87092   344 adlpekvirelafqaqgdLSPMVAYIGGFVAQEVLKAcSGKFHPLVQHLYVDSL---ESLPDSV 404  Ustilago maydis 521

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