Conserved Protein Domain Family
Ube1_repeat2

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cd01490: Ube1_repeat2 
Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Statistics
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PSSM-Id: 238767
Aligned: 18 rows
Threshold Bit Score: 632.017
Created: 10-Jan-2006
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
Feature 1:catalytic residue [active site]
Evidence:
  • Comment:forms thioester bond with ubiquitin (-like) molecule

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                      
O94609     429 STFLVGAGAIGCEMLKNWAMMGvat------------------gesGHISVTDMDSIEKSNLNRQFLFRPRDVGKLKSEC 490  fission yeast
EAK87936   457 NIFIVGAGALGCEFLKSMALLGvgc------------------gpnGTVTITDMDNIEVSNLNRQFLFRQEHVGSPKSAI 518  Cryptosporidium ...
EAA38434   498 SLFVIGAGALGCELLKQFALIGaat------------------dtqSLLELTDLDNIENSNLSRQFLFREKDIGKMKAEV 559  Giardia lamblia ...
P41226     433 HYLLVGAGAIGCELLKVFALVGlga------------------gnsGGLTVVDMDHIERSNLSRQFLFRSQDVGRPKAEV 494  human
NP_701611  505 NVFLVGSGALGCEYAKLFSLLDmctrnseqntnlnqnnidnnlaccGKLTITDNDNIEVSNLNRQFLFRREHVGKSKSLV 584  Plasmodium falci...
NP_910456  459 NTFVVGSGALGCEFLKNLALMGvsc------------------spkGKLTITDDDVIEKSNLSRQFLFRDWNIRQAKSTV 520  Japanese rice
AAL90910   494 KVFTVGSGALGCEFLKNLALMGvsc------------------gsqGKLTVTDDDIIEKSNLSRQFLFRDWNIGQAKSTV 555  thale cress
NP_501800  519 RWFVVGAGAIGCELLKNLSMMGvac------------------gegGLIKITDMDQIEISNLNRQFLFRRRDVGGKKSEC 580  nematode
EAK87092   438 RQFLVGSGAIGCEMLKNWSMMGlgs------------------gpeGIIHVTDMDTIEKSNLNRQFLFRSKDVGHFKADT 499  Ustilago maydis 521
CAD89959   462 NIFLVGCGAIGCEMLKNFALLGvgts-----------------kekGMITVTDPDLIEKSNLNRQFLFRPHHIQKPKSYT 524  human
Feature 1                                                                                      
O94609     491 ASTAVSIMnpslTGKITSYQERVGPESEGIFGDEFFEKLSLVTNALDNVEARMYVDRRCVFFEKPLLESGTLGTKGNTQV 570  fission yeast
EAK87936   519 AAQVIRTIn--kDINIISLQTRVGTDTEDVFDDIFWNKTSFVINALDNVPSRMYINDRCLWYEKPLLESGTLGTKANSET 596  Cryptosporidium ...
EAA38434   560 AAANVKLMn--pELNINARCLRVGEETEDVLNSEFWLSKTVIVNALDNVPTRMYVDGRCCLYRTALLESGTLGQKANMQV 637  Giardia lamblia ...
P41226     495 AAAAARGLn--pDLQVIPLTYPLDPTTEHIYGDNFFSRVDGVAAALDSFQARRYVAARCTHYLKPLLEAGTSGTWGSATV 572  human
NP_701611  585 SSEIIKKKn--nNMHVQSLETKVGAENEHIFNEEFWTKQNIIVNALDNIQARQYVDNKCVWYSKPLFESGTLGTKGNVQV 662  Plasmodium falci...
NP_910456  521 AAAAASAIn--pNLCIDALQNRACPDTENVFHDTFWEGLDVVINALDNVNARMYMDMRCLYFQKALLESGTLGAKCNTQM 598  Japanese rice
AAL90910   556 AASAAAVIn--pRFNIEALQNRVGAETENVFDDAFWENLTVVVNALDNVNARLYVDSRCLYFQKPLLESGTLGTKCNTQS 633  thale cress
NP_501800  581 AARAVTAFn--sDVRIEALAERVGLETEHIFNDEFFGELNGVANALDNVDARRYMDRRCVYYRLPLLESGTMGTKGNTQV 658  nematode
EAK87092   500 AAAAVAEMnpdlKGKIHSHQNRVGPETEDVYGDEFFASLTGVTNALDNVQARQYMDRRCVYYEKPLLESGTLGTKANTQV 579  Ustilago maydis 521
CAD89959   525 AADATLKIn--sQIKIDAHLNKVCPTTETIYNDEFYTKQDVIITALDNVEARRYVDSRCLANLRPLLDSGTMGTKGHTEV 602  human
Feature 1                               #                                                      
O94609     571 VVPHLTESYGSs---qDPPEKSFPICTLKNFPNRIEHTIAWARDLFEGLFKQPIDNVNMYLsspnfletslktssnpr-- 645  fission yeast
EAK87936   597 YLPHKTQSYSDn---rDPAEESIPLCTLKHFPHAIEHTIEWARDAFQGIFTSDPQEAITFLnspceyiqnlkqrgnpnvi 673  Cryptosporidium ...
EAA38434   638 IVPWLTETYGSq---rDPETSDDPACTIHNFPNTIVHCIVYATSEFKGVFEQGCADFAKLKteglqpfvdnllknkdtie 714  Giardia lamblia ...
P41226     573 FMPHVTEAYRApasaaASEDAPYPVCTVRYFPSTAEHTLQWARHEFEELFRLSAETINHHQqahtsladmdepqtlt--- 649  human
NP_701611  663 IIPYLTQSYNDs---yDPPEDSIPLCTLKHFPYDIVHTIEYARDIFQGLFYNTPLSIKQFLndkeeyinkiqeegnnasl 739  Plasmodium falci...
NP_910456  599 VIPHLTENYGAs---rDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPGEVNSFLsnpaqyaaamrkagdaqa- 674  Japanese rice
AAL90910   634 VIPHLTENYGAs---rDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLsspveytnsmmsagdaqa- 709  thale cress
NP_501800  659 VYPYLTESYSSs---vDPPEKEIPVCTLKNFPNEIQHTIQWAREQFETFFAQPGEMANKFLsdergfnehvdklisgqq- 734  nematode
EAK87092   580 VVPHLTESYSSs---qDPPEKSIPVCTLKNFPNAIEHTIQWAREQFDEYFLKPAENVNQYLsqpdyiettlksgsgak-- 654  Ustilago maydis 521
CAD89959   603 IVPHLTESYNSh---rDPPEEEIPFCTLKSFPAAIEHTIQWARDKFESSFSHKPSLFNKFWqtyssaeevlqkiqsghs- 678  human
Feature 1                                                                                      
O94609     646 ---evlenirdylvtekplsFEECiMWARLQFDKFFNNNIQQLLFNFPKDSVTSTGQPFWSGPKRAPTPLSFDIHNREHF 722  fission yeast
EAK87936   674 leksqkifelinwisekdptHEDCiRMAIHLFHDYFYCQIKQLLTNFPPDHINSDGLPFWSGPKRCPTPIKLNIQDKLHF 753  Cryptosporidium ...
EAA38434   715 arllqlqticmklphcvniiDRAC-NWACALFEKYFILTIEKILSDFPVNAKDKDGNNFWSGEKRPPHKLTYDANNPIHH 793  Giardia lamblia ...
P41226     650 -----llkpvlgvlrvrpqnWQDCvAWALGHWKLCFHYGIKQLLRHFPPNKVLEDGTPFWSGPKQCPQPLEFDTNQDTHL 724  human
NP_701611  740 -lenlqnvinslkeissqcnFDFCiKKSVELFHNNFINQINQLLYSFPLDYKLSSGEYFWVGQKKPPQPIVFDVNNEMIQ 818  Plasmodium falci...
NP_910456  675 --rellervseclgkercslFEDCiRWARLKFEDYFSNRVKQLTFTFPEDAATSTGAPFWSAPKRFPRPLQFSVSDPSHI 752  Japanese rice
AAL90910   710 --rdtleriveclekekcetFQDClTWARLRFEDYFVNRVKQLIYTFPEDAATSTGAPFWSAPKRFPRPLQYSSSDPSLL 787  thale cress
NP_501800  735 --idilqkvkdalidarpssAEDCiRWARNQFQELYHNNIAQMLHSFPPDQLTDSGAKFWSGAKRCPHVLNFDPSKEEHF 812  nematode
EAK87092   655 ---eqldqikqylvderpksFEQCiYWARLRFEENYSNNIRQLLHSLPADAVTSSGQPFWSGPKRAPKPLTFDANDPTHL 731  Ustilago maydis 521
CAD89959   679 ---legcfqvikllsrrprnWSQCvELARLKFEKYFNHKALQLLHCFPLDIRLKDGSLFWQSPKRPPSPIKFDLNEPLHL 755  human
Feature 1                                                                                      
O94609     723 DFIVAAASLYAFNYGLKSetdpaiyervlagynpppfapksgikiqvneneea----------petaankdkqelksiad 792  fission yeast
EAK87936   754 DFILSASNLYSNMVRLPEisdssiifkvsnetilpefnakttiikiddddntssnen-sssssiildtsiaeeytnklls 832  Cryptosporidium ...
EAA38434   794 DFISTAARLYTVILGNDVdissetimsiatayfaassaspakaviltrevaakqisnflnctynpetisqlladdtlfdq 873  Giardia lamblia ...
P41226     725 LYVLAAANLYAQMHGLPGsqdwtalrellkllpqpdpqqmapifasnlel---------------asasaefgpeqqkel 789  human
NP_701611  819 EFLLSTSNLLAQVYNIPPcfdinyiinvakkievkpfepkkvkinmdeknln-----------nisisfaeeekiiddfc 887  Plasmodium falci...
NP_910456  753 HFIMSASILRAESFGIAIpdwakntskladavsevavpqfepkkgvsivtdekat-----slssasvddvsviddllakl 827  Japanese rice
AAL90910   788 NFITATAILRAETFGIPIpewtknpkeaaeavdrvivpdfeprqdakivtdekat-----tlttasvddaaviddliaki 862  thale cress
NP_501800  813 NFVFAASILIAELYGVQPildreevirvalsvnpepfepksgvkiavtdaeakeqn----ergassmivdddaaiealkl 888  nematode
EAK87092   732 EYVMSAALLHAENYGLKGeadaalfrkvlssmqvpefvpkdnvkiqvneneaa---------ttnnnsnadgddlteits 802  Ustilago maydis 521
CAD89959   756 SFLQNAAKLYATVYCIPFaeedlsadallnilsevkiqefkpsnkvvqtdetarkp----dhvpissedgrnaifqleka 831  human
Feature 1                                                                                      
O94609     793 slpppsslvgfrltpaeFEKDDDSNHHIDFITAASNLRAMNYDITPADRFKTKFVAGKIVPAMCTSTAVVSGLVCLELVK 872  fission yeast
EAK87936   833 ftenrikrclnfiqpieFEKDDDSNFHIDFMNSCANLRARNYSIKECDRHKCKMIAGRIIPAMATTTAMITGLVSFEALK 912  Cryptosporidium ...
EAA38434   874 eflkhlspwgvtpralvFEKDDLTNGHVQYIASLANLRAENYDIPTIDYAEARRLSGSIIPAMVTTTASVVGLVGIEFYK 953  Giardia lamblia ...
P41226     790 nkalevwsvgpplkplmFEKDDDSNFHVDFVVAAASLRCQNYGIPPVNRAQSKRIVGQIIPAIATTTAAVAGLLGLELYK 869  human
NP_701611  888 kellniptnnikinpieFDKDEQTNLHVNFIYAFSNLRAINYKINTCDKLKAKIVAGKIIPALATTTSIITGLVGIELLK 967  Plasmodium falci...
NP_910456  828 eecakrlppgfqmkpiqFEKDDDTNFHMDLISGFANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYK 907  Japanese rice
AAL90910   863 dqcrhnlspdfrmkpiqFEKGDDTNYHMDVIAGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYK 942  thale cress
NP_501800  889 klatlnvkstsklncvdFEKDDDSNHHMEFITAASNLRAENYDILPADRMRTKQIAGKIIPAIATTTAAVAGLVCIELYK 968  nematode
EAK87092   803 slpeasslagvrlqpieMEKDDDTNHHMDFITAASNLRASNYGISPADKHQTKGIAGKIIPAIATTTALATGLVNLELYK 882  Ustilago maydis 521
CAD89959   832 ilsneatksdlqmavlsFEKDDDHNGHIDFITAASNLRAKMYSIEPADRFKTKRIAGKIIPAIATTTATVSGLVALEKIK 911  human
Feature 1                                                                                      
O94609     873 LVDgkkk-------------------ieeYKNGFFNLAIGLFTFSDPIASpkmkv------------ngkeiDKIWDRyn 921  fission yeast
EAK87936   913 VSSlgey------------------kielFKNSFINLSLPLYVITEPLPApktiskefdpivegplrarpegFTAWDKlv 974  Cryptosporidium ...
EAA38434   954 VLLwnnpdls------------arhpladYKSAFFNFALPSLQLSEPGPCtfvecs-----------ttkekITPWDHie 1010 Giardia lamblia ...
P41226     870 VVSgprp-------------------rsaFRHSYLHLAENYLIRYMPFAPaiqtf-------------hhlkWTSWDRlk 917  human
NP_701611  968 YVNyydniqayvklsdeqrkkekhdvlsyFKNAFINSALPLFLFSEPMPPlrmmdkeydelmkgpvkaipngFSSWDKiv 1047 Plasmodium falci...
NP_910456  908 VIAgehp-------------------iedYRNTFANLALPLFSMAEPVPPkvmkh-------------qdmsWTVWDRws 955  Japanese rice
AAL90910   943 VLDgghk-------------------veaYRNTFANLALPLFSMAEPLPPkvvkh-------------rdmaWTVWDRwv 990  thale cress
NP_501800  969 VVDangipk---------------tpmerFKNTFLNLSMPFFSSAEPIGApkkty-------------mdreFTLWDRid 1020 nematode
EAK87092   883 LLDekks-------------------leaYSNAFVNLALPFIAFSDPIAAqklky-------------ndteWTLWSRfk 930  Ustilago maydis 521
CAD89959   912 VTGgyp--------------------feaYKNCFLNLAIPIVVFTETTEVrktki------------rngisFTIWDRwt 959  human
Feature 1                                                        
O94609     922 lpdctlqelid----yfqkeeglevtmLSSGVSLLYANFQpp-kKLAERL 966  fission yeast
EAK87936   975 ieqkdgtvqnii--dyltnkmnletqiISFGNICLYNAYIp---NHQERK 1019 Cryptosporidium parvum
EAA38434  1011 lpktvtvqgvi---dyfrdrykgdvdsIIFNTRMVYSSFGngavALDKRL 1057 Giardia lamblia ATCC 50803
P41226     918 vpagqpertlesllahlqeqhglrvriLLHGSALLYAAGWsp-eKQAQHL 966  human
NP_701611 1048 isikngtikdli--dhinekysidvnlISVGNACLYNCYLp--aHNKERL 1093 Plasmodium falciparum 3D7
NP_910456  956 ikgnltvaell----qwfsdkgltaysISCGTSLLYNNMFa---RHKERL 998  Japanese rice
AAL90910   991 lkgnptlrevl----qwledkglsaysISCGSCLLFNSMFt---RHKERM 1033 thale cress
NP_501800 1021 vqgpltlqefid--nvqnqtggcevsmLSAGACLLFSFFMna-gKKQERL 1067 nematode
EAK87092   931 veqdvtlqefl---dlfkdkhglevsmLSSGVSMLFSAFLpa-rKREERL 976  Ustilago maydis 521
CAD89959   960 vhgkedftlldf-inavkekygieptmVVQGVKMLYVPVMp---GHAKRL 1005 human

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