Conserved Protein Domain Family
vWA_collagen_alphaI-XII-like

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cd01482: vWA_collagen_alphaI-XII-like 
Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Statistics
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PSSM-Id: 238759
Aligned: 12 rows
Threshold Bit Score: 240.266
Created: 10-Jan-2006
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
integrin-coll..metal
Feature 1:integrin-collagen binding site
Evidence:
  • Comment:three loops on the upper surface of integrin that coordinate the metal through MIDAS residues also engage collagen

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1               ### #                                                                  
Q02388      37 ADIVFLLDGSSSIGR-SNFREVRSFLEGLVLPFsgAASAQGVRFATVQYSDDPRTEFGLDALGSGGDVIRAIRELSYKGG 115  human
O43405     164 ADIAFLIDGSFNIGQ-RRFNLQKNFVGKVALML--GIGTEGPHVGLVQASEHPKIEFYLKNFTSAKDVLFAIKEVGFRGG 240  human
P34576    1229 TDLVFLIDGSGSIGSyVFKNEVLRFVREFVELF--EIGRSKTRVGLIQYSDQIRHEFDLDQYGDRDSLLKGISETQYLTG 1306 Caenorhabditis e...
Q99715    2322 ADIVFLTDASWSIGD-DNFNKVVKFIFNTVGGFd-EISPAGIQVSFVQYSDEVKSEFKLNTYNDKALALGALQNIRYRGG 2399 human
Q9P218     185 ADMVFLVDGSWSIGH-SHFQQVKDFLASVIAPF--EIGPDKVQVGLTQYSGDAQTEWDLNSLSTKEQVLAAVRRLRYKGG 261  human
AAK58847   240 TDIVLLVDGSWSIGR-SNFKLIKEFLSALISPF--NIAQDKIRVGLSQYSSDPRTEWDLSAYATRDQVLEAVRNLRYKGG 316  chicken
Q60847    1202 ADIVLLVDGSWSIGR-ANFRTVRSFISRIVEVF--EIGPKRVQIALAQYSGDPRTEWQLNAHRDKKSLLQAVANLPNKGG 1278 house mouse
Q99715     439 ADIVFLVDGSYSIGI-ANFVKVRAFLEVLVKSF--EISPNRVQISLVQYSRDPHTEFTLKKFTKVEDIIEAINTFPYRGG 515  human
Q60847     139 TDLVFLVDGSWSVGR-NNFKYILDFIVALVSAF--DIGEEKTRVGVVQYSSDTRTEFNLNQYYRREDLLAAVKKIPYKGG 215  house mouse
P15989      37 ADIIFLVDSSWSIGK-EHFQLVREFLYDVVKAL--DVGGNDFRFALVQFSGNPHTEFQLNTYPSNQDVLSHIANMPYMGG 113  chicken
Q91145     632 ADIVLLVDGSWSIGR-PNFKIVRNFISRVVEVF--DIGSDRVQIAVSQYSGDPRTEWQLNTHKTKKSLMDAVANLPYKGG 708  eastern newt
CAA72402     6 ADLVFMVDGSWSIGD-ENFNKIISFLYSTVGALn-KIGTDGTQVAMVQFTDDPRTEFKLNAYKTKETLLDAIKHISYKGG 83   human
Feature 1       #                                                                              
Q02388     116 NTRTGAAILHVADHVFLp----qLARPGVPKVCILITDGKSQDLVDTAAQRLKGQGVKLFAVGIKNAD-PEELKRVASQP 190  human
O43405     241 NSNTGKALKHTAQKFFTvd---aGVRKGIPKVVVVFIDGWPSDDIEEAGIVAREFGVNVFIVSVAKPI-PEELGMVQDVT 316  human
P34576    1307 LTRTGAAIQHMVQEGFSerrgarPQQSDIARVAIILTDGRSQDNVTGPADSARKLSINTFAIGVTDHVlASELESIAGSP 1386 Caenorhabditis e...
Q99715    2400 NTRTGKALTFIKEKVLTwe---sGMRKNVPKVLVVVTDGRSQDEVKKAALVIQQSGFSVFVVGVADVD-YNELANIASKP 2475 human
Q9P218     262 NTFTGLALTHVLGQNLQpa---aGLRPEAAKVVILVTDGKSQDDVHTAARVLKDLGVNVFAVGVKNAD-EAELRLLASPP 337  human
AAK58847   317 NTFTGLALTHVLEQNLKpd---aGARLEAEKLVILLTDGKSQDDANLAAQTLKNMGIEIFAIGVKNAD-EAELKQVASEP 392  chicken
Q60847    1279 NTLTGMALNFIRQQSFKtq---aGMRPRARKIGVLITDGKSQDDVEAPSKKLKDEGVELFAIGIKNAD-EVELKMIATDP 1354 house mouse
Q99715     516 STNTGKAMTYVREKIFVps---kGSRSNVPKVMILITDGKSSDAFRDPAIKLRNSDVEIFAVGVKDAV-RSELEAIASPP 591  human
Q60847     216 NTMTGDAIDYLVKNTFTes---aGSRAGFPKVGIIITDGKSQDEVEIPARELRNIGVEVFSLGIKAAD-AKELKQIASTP 291  house mouse
P15989     114 GSKTGKGLEYLIENHLTkaa-gsRASEGVPQVIIVLTDGQSQDDVALPSSVLKSAHVNMIAVGVQDAV-EGELKEIASRP 191  chicken
Q91145     709 NTNTGSALKFILENNFRpg---vGMREKARKIAILLTDGKSQDDIVAPSKRYADEGIELYAVGIKNAD-ENELKEIASDP 784  eastern newt
CAA72402    84 NTKTGKAIKYVRDTLFTae---sGTRRGIPKVIVVITDGRSQDDVNKISREMQLDGYSIFAIGVADAD-YSELVSIGSKP 159  human
Feature 1                  
Q02388     191 TSDf-FFFVNDF 201  human
O43405     317 FVDkaVCRNNGF 328  human
P34576    1387 NRWfyVDKFKDL 1398 Caenorhabditis elegans
Q99715    2476 SERh-VFIVDDF 2486 human
Q9P218     338 RDIt-VHSVLDF 348  human
AAK58847   393 LELt-VYNVLDF 403  chicken
Q60847    1355 DDTh-AYNVADF 1365 house mouse
Q99715     592 AETh-VFTVEDF 602  human
Q60847     292 SLNh-VFNVANF 302  house mouse
P15989     192 FDTh-LFNLENF 202  chicken
Q91145     785 DELy-MYNVADF 795  eastern newt
CAA72402   160 SARh-VFFVDDF 170  human

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