1M2O,1M2V


Conserved Protein Domain Family
trunk_domain

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cd01468: trunk_domain 
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trunk domain. COPII-coated vesicles carry proteins from the endoplasmic reticulum to the Golgi complex. This vesicular transport can be reconstituted by using three cytosolic components containing five proteins: the small GTPase Sar1p, the Sec23p/24p complex, and the Sec13p/Sec31p complex. This domain is known as the trunk domain and has an alpha/beta vWA fold and forms the dimer interface. Some members of this family possess a partial MIDAS motif that is a characteristic feature of most vWA domain proteins.
Statistics
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PSSM-Id: 238745
Aligned: 27 rows
Threshold Bit Score: 193.231
Created: 12-Dec-2003
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1M2O_A   119 TVPPIFFFVVDLTSE---TENLDSLKESIITSLSLLPPNALIGLITYGNVVQLHDLSSeti--------drCNVFRGdre 187 baker's yeast
4558550  274 SDSRTSAPVVLVIDEcldEPHLQHLQSSLHAFVDSLPQTTRLGIILYGRTVSIYDFSEdsvasadvisgakSPSAESmka 353 thale cress
12328571 259 PDTRVSGPIFILIDEcldEAHLQHLQGSLHAFVDTLPPTARIGIISYGRTVSVYDFSEgaavsadvlpgnkSPTHESlka 338 Japanese rice
3702631  120 QLTPVFLFVVDVCQD---EENLQALKDSLIISLSLLPPECLVGLVTFGTMVDVYELGYtec--------skSYVFRGskd 188 fission yeast
20141794 126 QSPLIFLYVVDTCLE---EDDLQALKESLQMSLSLLPPDALVGLITFGRMVQVHELSCegi--------skSYVFRGtkd 194 human
4567227  124 PSPPVFLFVVDTCLI---SEELDFLKSSLFQALDLLPDTSILGLITFDSLVRVYELGFphc--------tkSYFFHGnkd 192 thale cress
14530602 130 TMPPIFVFVVDTCMT---AEELKSLKECLQTALSLLPADALVGLITYGRMVQLHELNTqgi--------srSYVFKGtke 198 Caenorhabditis elegans
4176521  120 KSPPVFLFVMDTAVD---ESELTALKDAVIVSLSLLPPDAIVGLITYGSLIQVHEIGFeam--------pkSYVFQPaad 188 fission yeast
7271162  126 TMPPVFIFLVDTCMD---EEELDALKDSLQMSLSLLPTNALVGLITFGKMIQVHELGAegc--------skSYVFRGtkd 194 fruit fly
2244772  128 PPPPVFVFVLDTCMI---EEELGYAKSALKQAIGLLPENALVGFVSFGTQAHVHELGFsem--------skVFVFKGnke 196 thale cress
1M2O_A   188 yqlealtemltgqkptg------------------------------------------------pggaashlpnamnkv 219 baker's yeast
4558550  354 l------------------------------------------------------------------------------- 354 thale cress
12328571 339 i------------------------------------------------------------------------------- 339 Japanese rice
3702631  189 ytskqiqemlglptsn---------------------------------------------------vspvalqqarsfq 217 fission yeast
20141794 195 ltakqiqdmlgltkpa---------------------------------------------------mpmqqarpaqpqe 223 human
4567227  193 ctkdqlldqlsffvknp-------------------------------------------------kpssgviagardgl 223 thale cress
14530602 199 vtakqikdvmaggglsqrpaagapgapagapgapmamgsgaaplgqlpgsglpgglprgggpplpgaaqgivapgggapv 278 Caenorhabditis elegans
4176521  189 ystmklqqllalsgnqir-----------------------------------------------sssskakisgtgitl 221 fission yeast
7271162  195 ltakqvqdmlgigrraa-------------------------------------------------pgpqqqqhlpgqpa 225 fruit fly
2244772  197 vtkdqildqlglgsssr------------------------------------------------raptsgfskgaqngf 228 thale cress
1M2O_A   220 tpfslNRFFLPLEQVEFKLNQLLENLspdqwsvpaghrplRATGSALNIASLLLQgcyk----------nipARIILFAS 289 baker's yeast
4558550  355 -iygtGVYLSPMHASLKVAHEIFSSLrpytlnv-peasrdRCLGTAVEAALAIIQgpsaemsrgvvrraggnSRIIVCAG 432 thale cress
12328571 340 -iygtGIYLSPVHASLPVAHTIFSSLrpyqlsl-pevsrdRCIGAAVEVALGIIQgpaaevsrgiikrsggnYRILVCAG 417 Japanese rice
3702631  218 gsaapSRFLLPIQQCEFQLTNILEQLqpdswpvandrrpqRCTGTALNISVSMMEsvcp----------nsgGHIMLFAG 287 fission yeast
20141794 224 hpfasSRFLQPVHKIDMNLTDLLGELqrdpwpvtqgkrplRSTGVALSIAVGLLEgtfp----------ntgARIMLFTG 293 human
4567227  224 ssddiARFLLPASDCHFTLHSVLEELgnspwpvaadhrpaRCTGVALRIAASLLGacfp----------gsaARIMAFIG 293 thale cress
14530602 279 phapaNKFLQPISECDESINDLIDQIsidrwpvpqghrplRATGAALAVAVTLLEscfp----------stgARIMSFIG 348 Caenorhabditis elegans
4176521  222 nlgaaSRFLMPVQKCEMHLLNILEQLqpdclevpagqrqlRCTGAAVKIASDLLGiafp----------kcgSRIELFCG 291 fission yeast
7271162  226 gaaapVRFLQPIGQCDAALGDLLSELqrdpwpvpqgkrylRSTGAALSIAVGLLEctyp----------ntgGRIMTFVG 295 fruit fly
2244772  229 qssgvDRFLLPASECEYTLDLLLDELqsdqwpvqpghrpqRCTGVALSVAAGLLGaclp----------gtgARIVALVG 298 thale cress
1M2O_A   290 GPGTVAPGLIVnselkdplrshhdidsdhaqhykkackFYNQIAQRVAANGHTVDIFAGCYDQIGMSEMKQLTDSTGGVL 369 baker's yeast
4558550  433 GPITYGPGSVPhsmshpnyp----------ymektaikWMENLGREAHRHNTVVDILCAGTCPLRVPILQPLAKASGGVL 502 thale cress
12328571 418 GPSTFGPGSVPhsvqhpnya----------ylektamkWMERLGHEAQRHSTVVDILCAGTCPVRVPVLQPLAKCSGGVL 487 Japanese rice
3702631  288 GPSTVGPGTVVstelrepirshhdierdqakhvkkalrFYEGLTKRVSANGHAVDILAGCLDQIGIMEMKSLASSTGGYL 367 fission yeast
20141794 294 GPPTQGPGMVVgdelkipirswhdiekdnarfmkkatkHYEMLANRTAANGHCIDIYACALDQTGLLEMKCCANLTGGYM 373 human
4567227  294 GPSTQGPGAIVsrelsdpirshkdidkdsamyyhkaveFYEMLAKQLVHQGHVLDVFASSVDQVGIAELKVAVEQTGGFV 373 thale cress
14530602 349 GACTHGPGAVVgeelknpirswnsikedaapymkkaikFYDGLAARIVKNGHAVDVYSCALDQTGLLEMKNMFNSSGGHV 428 Caenorhabditis elegans
4176521  292 GPCTVGLGQVVstelkepmrshseiandkakhfkkskkFYSSLAERLSNQGHALDLFAGCLDQVGIMEMENLVNNTGGAI 371 fission yeast
7271162  296 GPCSQGPGQVVddelkhpirshhdihkdnvrfmkkaikHYDALALRAATNGHSVDIYSCALDQTGLLEMKQLCNSTGGHM 375 fruit fly
2244772  299 GPCTEGPGTIIskdlsdpvrshkdldkdaapyykkavkFYDSIAKQLVAQGHVLDLFASALDQVGVAEMKVAVESTGGLV 378 thale cress
1M2O_A   370 LLTdafstAIFKQSYLR 386 baker's yeast
4558550  503 VLHdd-fgEAFGVDLQR 518 thale cress
12328571 488 LLHdd-fgEAFGVNLQR 503 Japanese rice
3702631  368 VLSdsfttSIFKQSFQR 384 fission yeast
20141794 374 VMGdsfntSLFKQTFQR 390 human
4567227  374 VLAesfghSVFRDSLKR 390 thale cress
14530602 429 VMGdsfnsSLFKQTYQR 445 Caenorhabditis elegans
4176521  372 VLSdsfttSIFKQSFQR 388 fission yeast
7271162  376 VMGdsfnsSLFKQTFQR 392 fruit fly
2244772  379 VLSesfghSVFKDSFKR 395 thale cress
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