Conserved Protein Domain Family
VWA_YIEM_type

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cd01462: VWA_YIEM_type 
VWA YIEM type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains. Members of this subgroup have a conserved MIDAS motif, however, their biochemical function is not well characterised.
Statistics
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PSSM-Id: 238739
Aligned: 15 rows
Threshold Bit Score: 128.234
Created: 10-Jan-2006
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
metal
Feature 1:metal ion-dependent adhesion site (MIDAS)
Evidence:
  • Comment:binding of divalent cations is mediated by the MIDAS motif

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1              # # #                                                                    
P33352      215 WQLVLLVDQSGSMVd--------SVIHSAVMAACLWQLp------gIRTHLVAFD--------TSVVD---LTADVADPV 269 Escherichia coli
NP_812821   199 KDIILCLDQSGSMG---------TSVIYSGIFGSVLASip-----aVSTRMVVFD--------TAVVD---LTDDLQDPV 253 Bacteroides thet...
Q60384      224 GDFVVCLDLSGSMRg-------nKEIWAKAIALCLMDIslk---rnKRYISILFDdgv---rdIKIYE---KKVSFDEIL 287 Methanocaldococc...
ZP_00077094 376 GPMIVLVDTSGSMHga------pQTLAKSAVLAMAKLMls----qqRDMKVILFAstsq-hleIELSS---RKKMSEKFL 441 Methanosarcina b...
NP_233148   321 GPFILCIDASGSMSgf------pEQCAKAMAYALMQIAla----edRDCYVMLFSse----fiTYELT---RQDGLREAS 383 Vibrio cholerae
NP_559736   250 KGVYLLIDKSGSMY---------GAVKGVEKIAVAAAYaiaalrrfKNVVVRFFD--------AEVYE---PISDVEKLV 309 Pyrobaculum aero...
P03818      264 GPFIVCVDTSGSMGgf------nEQCAKAFCLALMRIAla----enRRCYIMLFSte----ivRYELS---GPQGIEQAI 326 Escherichia coli...
ZP_00078124 434 GPVVALVDTSASMRgs------pELLAKAVVLAVTRRMlt----enRDVKVILFSsk----wqTVEIEltnKKRMGEEFL 499 Methanosarcina b...
Q58221      272 GPIIILLDHSGSMYgd------rEIWGKAVALSIIEIAkr----enRDIYYIAFDdgv--rfeKKINP---KTITFDEII 336 Methanocaldococc...
NP_631624   374 GAVIACVDTSHSMYeagpggitrEAWAKACALALLDQArh----agRDFVGIVFSaadrlrvfRFPAD---RPAGLARTL 446 Streptomyces coe...
Feature 1                  #                               #                                    
P33352      270 ELLmkVQLGGGTNIASAVEYGRQLieq------paKSVIILVSDFyEGGSSSLl----tHQVKKCVqSGIKVLGLAalds 339 Escherichia coli
NP_812821   254 DLLfgVQLGGGTDIARALTYCQGVitr------pqDTVMVLVTDLyEGGDSREmrk-kfVSLVNSGvQLIVLPALNd--- 323 Bacteroides thet...
Q60384      288 EFAs-VFYGGGTNFEKPLREALKF-----------NGDIVFITDG-ECEVSLEfl---eKIKEEKQrRKIKIYSICi--- 348 Methanocaldococc...
ZP_00077094 442 NFLl-YTFGGGTDFNTALASGLKSlkek----dfqGADLLFITDG-KSEVSDElvlarwEEAKKKYnAKVYSLIVGs--- 512 Methanosarcina b...
NP_233148   384 DFLs-YSFHGGTDFEPVILKSIELmssd----kyrNGDLVVMSDFiAPKQSDEll--aqVAELKTRkNRFHAISLSk--- 453 Vibrio cholerae
NP_559736   310 DVLtrVVASGGTDITKAVEAATEDaksr----rleGYTLAVVTDGeDDKLNPVv-----LKEARAVfKEVWFVLIGd--- 377 Pyrobaculum aero...
P03818      327 RFLs-QQFRGGTDLASCFRAIMERlqsr----ewfDADAVVISDFiAQRLPDDvts-kvKELQRVHqHRFHAVAMSa--- 397 Escherichia coli...
ZP_00078124 500 EFLk-FTFGGGTDFNTALRAGLKAmkne---kafeGADLLFLTDG-YSELSEKplirewNEIKAERrARIFSLIIGn--- 571 Methanosarcina b...
Q58221      337 EIAs-LYFGGGTNFIMPLNRAMSIikeh---etfkNADILLITDG-YAEVNDVflk-efDKFKNEYnAKLISVFVE---- 406 Methanocaldococc...
NP_631624   447 DFAe-TFLGGGTSYERPLSAAGELleaefddaartRGDIVMLTDD-DCGVTEAwm--rsWNEAKRR-LGFRVFGVGv--- 518 Streptomyces coe...
Feature 1                                  
P33352      340 tATPCYDRDTAQA----------LVNV 356 Escherichia coli
NP_812821   324 dGAPSYDKGHAEF----------LASI 340 Bacteroides thetaiotaomicron VPI-5482
Q60384      349 nTKPTVSLRQISDv--------sVTIY 367 Methanocaldococcus jannaschii
ZP_00077094 513 sGAGGLSEISDYI----------YFVE 529 Methanosarcina barkeri
NP_233148   454 yGNPQLMSMFDHCwsy----hpsLVGR 476 Vibrio cholerae
NP_559736   378 sKPPPYVRVARLF----------LGED 394 Pyrobaculum aerophilum str. IM2
P03818      398 hGKPGIMRIFDHIwrfdtgmrsrLLRR 424 Escherichia coli O157:H7
ZP_00078124 572 yDAGGLQQISDHTy---------LIGN 589 Methanosarcina barkeri
Q58221      407 -TFPTETLKAISDe---------VIKV 423 Methanocaldococcus jannaschii
NP_631624   519 -GSPRVAAAGSVLe--------aLCDN 536 Streptomyces coelicolor A3(2)

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