2OCC


Conserved Protein Domain Family
Cyt_c_Oxidase_VIIb

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cd01403: Cyt_c_Oxidase_VIIb 
Click on image for an interactive view with Cn3D
Cytochrome C oxidase chain VIIb. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. The VIIb subunit is found only in eukaryotes and its specific function remains unclear. A rare polymorphism of the CcO VIIb gene may be associated with the high risk of nasopharyngeal carcinoma in a Cantonese family.
Statistics
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PSSM-Id: 238696
Aligned: 7 rows
Threshold Bit Score: 101.791
Created: 12-Dec-2003
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 2 residues -Click on image for an interactive view with Cn3D
Feature 1:Subunit I/VIIb interfae [polypeptide binding site]
Evidence:
  • Structure:2OCC_K: Interface with 2OCC_A (subunit I), defined using 3.5A contacts
  • Citation:PMID 8638158

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                        ##              
2OCC_K      5 RAPDFHDKYGNAVLASGATFCVAVWVYMATQIGIEWNPSPVGRVTPKEWRE 55  cow
BAB31829   31 SSEETHDKYGNMMLISGTIFCLAGYTIYMTQMGVEWNLSPIGRVTPQEWKK 81  house mouse
AAQ14277   29 HELNFHDKYGNLVLIGGAAFFATVWGYVLTKSGIEWGLSPIGRVTPKEWRE 79  turkey
CAF97307   25 APQDFHSKYGTGIMIGGAVFCTAIWSYVMTQTGITWNLSPIRKVMPKEWRE 75  Tetraodon nigroviridis
AAH18386   29 RTPDFHDKYGNAVLASGATFCIVTWTYVATQVGIEWNLSPVGRVTPKEWRN 79  human
AAH79809   28 AGPDFHDKYGNIILLSGTVFCASIWTYVITQTGIAWNLSPVGRITPKEWKD 78  African clawed frog
XP_691929  61 LSPEFHNKYGAPLLIAGATFCTAVWAYVITSTGIAWNLSPVGKVQPKEWKE 111 zebrafish

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