2CVF


Conserved Protein Domain Family
archRadB

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cd01394: archRadB 
archaeal RadB
The archaeal protein RadB shares similarity RadA, the archaeal functional homologue to the bacterial RecA. The precise function of RadB is unclear.
Statistics
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PSSM-Id: 410882
Aligned: 11 rows
Threshold Bit Score: 301.541
Created: 17-Aug-2020
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
ATP binding
Conserved site includes 13 residues -Click on image for an interactive view with Cn3D
Feature 1:ATP binding site [chemical binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                #######                     #    # #                 
2CVF_A      2 LSTGTKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGLLSGk---KVAYVDTEGgFSPERLVQMAEtrglnpeEALS 78  Thermococcus kodak...
Q9HPF2      8 LPTGCGALDELLGGGVERGTVTQLYGPPAAGKTNVALTTAVTTAaaggLAVYVDTEG-LSLARFQQLLEaratdpeAASA 86  Halobacterium sp. ...
O27728     12 RIPTESSIDRILGGGVERRTITQFYGPPGSGKTNITIKLAVETArrgkNTVFIDTEGgLSVERIRQVSGdi---fdRVAD 88  Methanothermobacte...
O28184      6 IPTGSKCIDSLLGGGVETGTVTQIYGHGGTGKTTLCLMLAKNAAeq-fKVAYIDTEG-LSGERVRQIFGd-----eRLFS 78  Archaeoglobus fulg...
A5UKT8     12 KIPTNSGIDNLLDGGVEKGTVTQIFGPPGSGKSNISLVLAVNVAkqgkKVVYVDTEGgISINRIKQIAGed---fpKIVN 88  Methanobrevibacter...
ABN07441    8 ISTGASGLDTLLGGGIEPRMITQFFGEAGSGKSTLCMTAAVSVLrkglGVVYIDSEG-FSIERFSQIAGas---teECAK 83  Methanocorpusculum...
Q9HJD3     13 IQTGVGCIDALLNGGLEGGIITEIFGEGGSGKTNICMIASCSAMsqglKVIYIDSEG-LSPERFLAVCR-------SDIS 84  Thermoplasma acido...
EGQ43841    6 VSTGSKPLDTLLEGGIERGVISNFYGESGSGKTNACIQISAEVAsshgNVAYIDTEAsFSAERFAQIASe------AELE 79  Candidatus Nanosal...
A3CXI2      6 VSTGSTAFDDLLGGGLERRAITQIYGEPASGKSTLCLMAAVATLragnSVVYIDTEG-FSVERFTQIAGen---agTLAD 81  Methanoculleus mar...
Q12U80      8 LLSSCKPLDELLGGGFESGVVTQIFGEAGSGKTNICLQLAIECVkkgkKAIFIDTEG-LSADRFKQIAGen---arKIAQ 83  Methanococcoides b...
Q2NHD1     12 LIPTNSSLDKLLGGGIEKGCITQFYGPPGSGKTNIALKILYEATkngsKAIYMDTEGgLSLERIQQIAGtd---fgSISK 88  Methanosphaera
Feature 1                                         #                                           
2CVF_A     79 RFILFTPSdfKEQRRVIGSLKKTVDsn---fALVVVDSITAHYRAEenr----sglIAELSRQLQVLLWIARKHNIPVIV 151 Thermococcus kodak...
Q9HPF2     87 NVIVSDAHdfDEQAQAVRDTADFADr----aDLIVVDSVTGFYRLArggddttgdaLRQVADQITHLLSLARKHDLAVVV 162 Halobacterium sp. ...
O27728     89 SIIVFEPSsfTEQGEALQRTFSFLKthgdstDLVVLDSAVALYRLKegna---ssfNLDLGRQMFLLLQMARRFDLAAVI 165 Methanothermobacte...
O28184     79 NVFVYEVYrfRQQGVAIQEAEKLCRse--kvKLVIVDCFTSLYRSEleddrkqikiKRELTSQLTFLLGMARKYDVAVVI 156 Archaeoglobus fulg...
A5UKT8     89 NIIVFEPTsfLEQNENLKTIELWIRkhhddvDLCVLDSAVALYRVDdmks---srlNKELGKQMGILAKIARNYDVAVVL 165 Methanobrevibacter...
ABN07441   84 HLYVFEPAtfAEQGLMISESEQLIKsg--taGLIVLDSATALYRVEqmdt---kdaLSMLSRQMMVLLGIAKRYDIPVLI 158 Methanocorpusculum...
Q9HJD3     85 MFKLFRVYslDDQEVAIMKASKMADrdq-kiGMIVLDSFSEFFRLEksdd--rqarIAEFQRQLSLLSSVAAKKNIPVLI 161 Thermoplasma acido...
EGQ43841   80 NVFVKDVTdfQQQKGAINSLQAMEQd----lELVVVDSMVSLYRLKvdggn-asevNNELSEQLSKLSEIARNQDIPVVI 154 Candidatus Nanosal...
A3CXI2     82 RLYLFEPLdfAQQGTMIADAEGLLKnghapvGLLVMDSATALYRTEldlg---reaIRKLSHHMIKLLGLAKKYDIPVLI 158 Methanoculleus mar...
Q12U80     84 DIIIFEPHsfEEQYSAVRETEKISTen---vGVIIVDSATAYYRFElddedssirtRRELSNQIGFLHSLARKRDIVVVI 160 Methanococcoides b...
Q2NHD1     89 NIYILEPKsfDEQILDIQNIEDILKkdk-siDMLIIDSIVALYRVEdgdp---seiNKRLGRLMAKLLRLSREYNVAIVI 164 Methanosphaera
Feature 1       #                                #                                 
2CVF_A    152 INQVHfdsrt---emtkPVAEQTLGYRCKDILRLDKLpkpGLRVAVLERHRFRPEGlMAYFRITERGIE 217 Thermococcus kodakarensis
Q9HPF2    163 TNQVFtdvdnd-sdrarPLGGHTLAHWTGTVLRLDRFr-gGTRRATLEKHRAKPDGeHAQFQITDGGID 229 Halobacterium sp. NRC-1
O27728    166 TNQIYsitgddgreyvsPVGGTLLRYWSKVMVELEMGerpGERFAVLRRHRNRLEGsRVGFRIVADGIL 234 Methanothermobacter thermauto...
O28184    157 TNQMFtdvgs---gvdrPLGGPSLEHLSKVIIALERSn--ELRKATLIKHRWMKEGkSCFYRITDRGIE 220 Archaeoglobus fulgidus DSM 4304
A5UKT8    166 TNQIYssfdddnkdvvkAVGGTILQYWSKTIIQLERNdefNKRVATLKRHRSIGEGkQATFKIVERGII 234 Methanobrevibacter smithii AT...
ABN07441  159 TNQVFmdidh---hrlsGLGGTALSHISKAIIRVEKHe--GFRRAVVSKHRSRPEGmSWEFVLTGTGVR 222 Methanocorpusculum labreanum Z
Q9HJD3    162 TNQIYqdidn---gtllPFGGFLVDHAMKAILRIEKMp-dGRRRITVTKHRSVREGvSAMFRITDDGVS 226 Thermoplasma acidophilum DSM ...
EGQ43841  155 TNQVYtsfdd---deleLVGSDVPKYWSKCLIQLSESq--DSRVAEIAKHRSLEEGqKVGFEITDNGLQ 218 Candidatus Nanosalina sp. J07...
A3CXI2    159 TNQIYmdver---drvaGLGGTALEHLSKAIIRLEKKd--SARRAMLRKHRSRPEGlSFDFTITEDGIR 222 Methanoculleus marisnigri
Q12U80    161 TNQVYsdiks---nslkPIGGSSLEHISKTIIQLEKTg-tGSRRAKIWKHRSRPEGtTCEFTITADGVR 225 Methanococcoides burtonii
Q2NHD1    165 TNQIYspfdsd-dliiePIGGTVLKYWSKIIIEIEKSvdsLKRTATLQRHKTKAPGqSIKFEIIDRGII 232 Methanosphaera

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