4DBQ,4DBR,3L9I,2X51,2V26,2BKH,2BKI,2VAS,4E7Z,4E7S,4DBP


Conserved Protein Domain Family
MYSc_Myo6

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cd01382: MYSc_Myo6 
Click on image for an interactive view with Cn3D
class VI myosin, motor domain
Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins which moves towards the plus-end of actin filaments. It is thought that myosin VI, unlike plus-end directed myosins, does not use a pure lever arm mechanism, but instead steps with a mechanism analogous to the kinesin neck-linker uncoupling model. It has been implicated in a myriad of functions including: the transport of cytoplasmic organelles, maintenance of normal Golgi morphology, endocytosis, secretion, cell migration, border cell migration during development, and in cancer metastasis playing roles in deafness and retinal development among others. While how this is accomplished is largely unknown there are several interacting proteins that have been identified such as disabled homolog 2 (DAB2), GIPC1, synapse-associated protein 97 (SAP97; also known as DLG1) and optineurin, which have been found to target myosin VI to different cellular compartments. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.
Statistics
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PSSM-Id: 276833
Aligned: 40 rows
Threshold Bit Score: 1057.62
Created: 5-Feb-2015
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
  next features
Conserved site includes 34 residues -Click on image for an interactive view with Cn3D
Feature 1:ATP binding site [chemical binding site]
Evidence:
  • Structure:4DBQ; Sus scrofa myosin VI binds Mg.ADP.BEF, contacts at 4A
  • Comment:the residues of the P-loop wrap around the triphosphate region of the nucleotide and the N-terminal region forms the binding pocket for the nucleotide
  • Structure:2V26; Sus scrofa Myosin VI binds Mg.Adp.Vo4, contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                    ### ######                                           
4DBQ_A         70 ATLLHNIKVRYSKDRIYTYVANILIAVNPYfDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVS 149  pig
JAA63808      123 ATLFNNIKVRYGKDKIYTYVANILIAVNPYfEMPHLYSSETIRRYQGKSLGVLPPHVFAIADKAFRDMKVLKQSQSIIVS 202  Rhipicephalus...
EDV24561       71 ATLLHNLRLRYHTDIIYTFVANILLAVNPY-HELKIYDAEHVKRYHNKSLGQLPPHIYSIADKAYRDMRISKQSQSIIVS 149  Trichoplax ad...
ADY41485       42 ATLLNNCRLRYMRKQIYTYVANILISINPYeQIHDLYSSATIKNYQGKSLGQLPPHIFAIADKAYRDMKRFCESQSIIVS 121  pig roundworm
CDJ97549       95 GTLLNNCRQRYSKKQIYTYVANILISINPYeEIENLYSIDTIKKYRGKSLGQMPPHVYAVADKAYREMRRNKESQSIIVS 174  barber pole worm
NP_490856      78 ATLLNNCRLRYANGKIYTYVANILISINPYqLIDGLYSPETIKEYRGKSLGQMEPHIFAIADKAYREMRRIKTSQSIIVS 157  nematode
NP_001023548   79 ATLLNNIRLRYQNGKIYSYVANILISINPYqTIDGFYSLQKIKEYRGKSLGQKEPHIFAIADKSYREMIRHRKSQSIIVS 158  nematode
CBY09893       96 ANLLNNSKQRYMNDKFYTYVANILVAINPYkNIKGFYDAATIKAYKGKSLGTLPPHCFAIADKSYRDMKVFNQSQSVIVS 175  Oikopleura di...
EJD76471       34 GSLLNNCRLRYNRKQFYTYVANILIAINPYeQISGLYDIDMVRKYKGQSLGTLPPHIFAIADKAYRDMMRNHESQSVIIS 113  Loa loa
ADY40738       77 ATLLHNCRQRYLRKQFYTYVANILIAINPYeQLTDLYDTNTMENYRGKSIGALPPHIFAIADNSYRDMLRMRQSQSIIIS 156  pig roundworm
Feature 1         ########                                                       ###########      
4DBQ_A        150 GESGAGKTENTKFVLRYLTESYGt-GQDIYDRIVE------------------ANPLLEAFGNAKTVRNNNSSRFGKFVE 210  pig
JAA63808      203 GESGAGKTESTKYILRYLCESWGshAGPIEQRILE------------------ANPVLEAFGNAKTMRNNNSSRFGKFIE 264  Rhipicephalus...
EDV24561      150 GESGAGKTESTKYIIRYLTESWGqgAGTIEQRIVE------------------ANPLLEAFGNAKTVRNDNSSRFGKFVE 211  Trichoplax ad...
ADY41485      122 GESGAGKTESQKYILKYLCESWGstAGPVQQRILE------------------TNPILEAFGNAKTLRNNNSSRFGKFVE 183  pig roundworm
CDJ97549      175 GESGAGKTESQKAILRYLCENWGaaAGPIQKRILE------------------TNPILEAFGNAKTLRNNNSSRFGKFVE 236  barber pole worm
NP_490856     158 GESGAGKTESQKAVLKYLCENWGtdAGPIQQRLLE------------------TNPILEAFGNAKTLRNNNSSRFGKFVQ 219  nematode
NP_001023548  159 GESGAGKTESQKAVLRYLCENWGsgAGEIQKRLLEstlflvlktikiiplkfsANPILEAFGNAKTLRNNNSSRFGKFVQ 238  nematode
CBY09893      176 GESGAGKTENTKFMINYLVSNYGsgQTSLDSKIIE------------------ANPLLEAFGNAKTVRNNNSSRFGKFIE 237  Oikopleura di...
EJD76471      114 GESGAGKTESQKHVIRFLCESWGhlVNTIEQRILE------------------ISTILESFGNAKTVCNNNSSRFGKFIE 175  Loa loa
ADY40738      157 GESGAGKTESQKQVLRYLCHSYGesDGSVEQRLLE------------------TNPILESFGNAKTVRNNNSSRFGKFVE 218  pig roundworm
Feature 1                                                                                         
4DBQ_A        211 IHFNEKsSVVGGFVSHYLLEKSRICVQGKEERNYHIFYRLCAGASEDIRERLhlsspdnf-------------------- 270  pig
JAA63808      265 IHFNSKcSVVGGFISHYLLEKSRICGQSKGERNYHIFYQLCAGAPNELRQQLritspddfhylrhgctqyfcssesekll 344  Rhipicephalus...
EDV24561      212 IHFDSQsSVVGGFISHYLLEKSRICVQSKYERNYHIFYALCGSLPDEQKKKLylknisdy-------------------- 271  Trichoplax ad...
ADY41485      184 IHFGSKyMVAGGFVSHYLLEKSRICQQQPGERNYHIFYQLIAGADAELAKKFvlkdadsfnylkgcaqfft----sssta 259  pig roundworm
CDJ97549      237 IHFGTDdKVAGGYVSHYLLEKSRVCRQADGERNYHIFYQLIAGAPDDLYKRLrlappdkfkylkhgtttffvrpgsksri 316  barber pole worm
NP_490856     220 IHFSDNgTVAGGFVSHYLLETSRVCRQAAGERNYHIFYQLIAGSSPDLYKKLrlapassfnylkhgatlffv---nskss 296  nematode
NP_001023548  239 IHFADTgNVAGGYVSHYLLETSRICRQAAGERNYHIFYQLIAGSSPELFKFLalgqpnqfnylkrgfigfft--hpssgt 316  nematode
CBY09893      238 VHFNDKhAVDGAQFSHYLLERSRIVSQNKNERNYHIFYRLCAGAPADVKNALklqapgayq------------------- 298  Oikopleura di...
EJD76471      176 IYFNDKgIIVGGSVSHYLLERSRLCGQSACERNYHIFYQLIAGADDQMANKLklnklenfnylnkgcmqffl---neess 252  Loa loa
ADY40738      219 VHFGKKpTIAGGLVSHYLLEKSRICGQNAAERNYHIFYQLIAGADEQLWNRLrlqsldtysylnkgcaqffa---svesh 295  pig roundworm
Feature 1                                                                                         
4DBQ_A        271 ------rylnrggsLKDPLLDDHGDFIRMCTAMKKIGLddEEKLDLFRVVAGVLHLGNIDFEEagstsgg-cnlknkSTQ 343  pig
JAA63808      345 knnsrskehqskgpLRDPVIDDAKDFSNLDRALRLMGLtdEERLNIYVAVAAVLHLGNVTFEEspddsrggsqvtpeSEQ 424  Rhipicephalus...
EDV24561      272 -------kylnhgdVDITTRDNVGDFKRMEASMNKLNIdiTERFNIYRLVSAVLQLGNITFEEdlsdsrggsnvcdeSKC 344  Trichoplax ad...
ADY41485      260 pkipkerrsskktdLHDGLVDDYADFQKLCGALSSIGLnaKDLNSIFQIIAALLHLGNVHFVDnvddrkggcmvdakSEE 339  pig roundworm
CDJ97549      317 sserlseqarksglLVDAIVDDAADFSHLADALGRAGLtkEEIGDIWRTVAGVLHLGNVEFDEnpndnrggcmvdpgSEQ 396  barber pole worm
NP_490856     297 lktdasrfsetnssVSDSIISDIDDFAKLERALALSGVsdDEKMFIWSTVAGILHLGNIEFEEnasdsrggcmitsgTEN 376  nematode
NP_001023548  317 tskipknrlsdpkfTQDSMVDDFSDFQRLEYALKLTGLseQEIHFIWTTIAAILHLGNVEFEEslddsrggckvfngSEQ 396  nematode
CBY09893      299 ------ylnqgdtrLFGGQLDDPIDFVRTENAMKKIGMakDKRMDVFKIVAAVLHLGNVEIIDgsngga---evtpkGIP 369  Oikopleura di...
EJD76471      253 skvvpgrknydlddMRDDLIDDYNDFRKLLDAFSHINIsaDIRDVVFEIVAAVLHLGNIEFLDetvgfksgcslreeSEM 332  Loa loa
ADY40738      296 nkipafrrgqmdtdLSDVVVDDYDDFGRLVSAFSKLGLssEQVDHVFECVAAVLHLGNIHFSEkvddfrgkcaidsaSEP 375  pig roundworm
Feature 1                                                                                         
4DBQ_A        344 ALEYCAELLGLDQDDLRVSLTTRVMlttaggaKGTVIKVPLKVEQANNARDALAKTVYSHLFDHVVNRVNQCFPFEtSSY 423  pig
JAA63808      425 SLRVAAALMGVDPDELRQSLLSRVMqtskgglKGTVYMVPLKAYEANNARDALAKAVYSKLFDLIVQRINQSIPFSsSSH 504  Rhipicephalus...
EDV24561      345 YLQNASRLLCLDESDLANSLTTRVMttarggtKGTVYMVPLKPEQCTNARDALAKAIYSRLFDAVVGRINSCIPFKsTSN 424  Trichoplax ad...
ADY41485      340 SLRLAASLLGVDPTELRHGLISRIMqsk-agaMGTIIRVPLKTYEAAAARDALAKAVYSRLFDSIVAHINKCIPFGdSVA 418  pig roundworm
CDJ97549      397 ALIIASELLGLEISEMKMGLVSRIMqatkggvKGTLIRVPLKPHEAAAGRDALAKAFYSKLFDWLVSRINKSIPFEkSVS 476  barber pole worm
NP_490856     377 SLMAAAELLGLEPEEMKLGLCARIMqttkggvKGTLIRVPLKAHEASAGRDALAKAIYSKLFDWLVAQINKSIPFEkSTG 456  nematode
NP_001023548  397 DLIQAARLLGLETMELKMGLCARIMqttkggaRGTLIRVPLKPHEACSGRDALSKAIYSKLFDWLVSRINDSIPFEkSTN 476  nematode
CBY09893      370 AINAAAELLGMDATQLIESITTRATkipgeatLVKVGQFSLIARNAIHARDALAKALYAKLFDHVCDLINKSIPAG-GAS 448  Oikopleura di...
EJD76471      333 YLINTAELLGIEVADLRKHLVTRLMqptrggtKGTLYAVPLRASEANAARDALSKAIYSRLFTAIVNKITECMLFDeTAF 412  Loa loa
ADY40738      376 SLSNASFLLGVDGGDLRRELLTRVMqptkggaKGTLYLVPLKMSEACAARDALAKAIYSRLFDQIVSWINSSIPFTeSAT 455  pig roundworm
Feature 1              ######                                                                     
4DBQ_A        424 FIGVLDIAGFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARlVGILDILD 503  pig
JAA63808      505 YIGVLDIAGFEYFQVNSFEQFCINYCNEKLQQFFNERILKEEQALYEREGLSVKKIEYVDNQDCIDLLEGKgTGIFDLLD 584  Rhipicephalus...
EDV24561      425 YIGVLDIAGFEYFRYNSFEQFCINYCNEKLQQYFNNRVLIEEQKLYEVEGLGISPVSFTDNQDCIDIIEAKpNGIFNLLD 504  Trichoplax ad...
ADY41485      419 YIGVLDIAGFEFFTVNSFEQFCINYCNEKLQQFFNDRILKQEQELYEKEGLHIPHIEYCDNRDCIELFEQRpSGLLDMLD 498  pig roundworm
CDJ97549      477 YIGVLDIAGFEFFEVNSFEQFCINYCNEKLQNFFNERILKQEQELYAKEGLNVPKIDYSDNHDCIELFEKKpSGLLDLLD 556  barber pole worm
NP_490856     457 YIGVLDVAGFEYFAVNSFEQFCINFCNEKLQHFFNERILKQEQEMYEAEGLNIQKIEFTDNLDCIELFEKKaSGLFDLLD 536  nematode
NP_001023548  477 FVGVLDVAGFEFYAKNSFEQFCINFCNEKLQNFFNQRILREEQELYEKEGLNVRKIEFIDNQDCIELFELKgNGLFDLLD 556  nematode
CBY09893      449 FIGILDIAGFEYFENNSFEQFCINYCNEKLQQFFNKRTLKDEMELYKVEGLRTKGVDYIDNQDMIELIEKPrVGIIDVLD 528  Oikopleura di...
EJD76471      413 SIGVLDTAGFESLDVNSYEQFCINYCNEKLQNFFNERILMDEQDLYCKEQLHYDTIEFNDNKNCIELFEQKlHGIFELLD 492  Loa loa
ADY40738      456 YIGVLDAAGFEFFSVNSFEQFCINFSNEKLQHFFNECILRNEQDLYMREGLRFERVKYSDNQECIDLFERKpNGLFILLD 535  pig roundworm
Feature 1                                                                                         
4DBQ_A        504 EENRLPQPSDQHFTSAVHQkhkdhfrlsiprksklaiHRNIRDDEGFIIRHFAGAVCYETTQFVEKNNDALHMSLESLIC 583  pig
JAA63808      585 EESKLPRSSHTHFTSVLHSthprhfrlavprksklrdHREITDDQGFLIRHFAGAVCYETAKFVEKNNDALHASLEGLVQ 664  Rhipicephalus...
EDV24561      505 EESKLPKSSCEHFTLAVHErydghfrlmaprksavstYRTLRNEEGFIIRHFAGAVCYATRQFIEKNNDALHTSLEMLIH 584  Trichoplax ad...
ADY41485      499 EEARLPCPSAQHFTAAIHKqhrnhfrlatprksklreHRDMRDDEGFLIRHYAGSVCYQTALFLEKNNDALHASLEMLVE 578  pig roundworm
CDJ97549      557 EESRLPRPTPQHYTMAAYGsnkghfrlesprrsrlrqHRDLREDEAFLVRHYAGTVCYQTAQFLDKNNDTLHNSLEFLVE 636  barber pole worm
NP_490856     537 EEAKLPRATFQHFTQRAHEsnknhfrldaprkskvksHREMRDDEGLLIRHYAGTVCYETRYFVEKNNDQLHNSLEMLIE 616  nematode
NP_001023548  557 EEAKFPTSNYKSFTKRAHEenrkhfrldtprkskvksHRELRDDEGLLIRHYAGSVCYETKHFVEKNDDLLHNSLQILIE 636  nematode
CBY09893      529 EEMKLPKPLDSHFAETLYNnhrkngrflsprkspvtkYKALTDSEAFILRHFAGAVCYNVNGFVDKNTDGLHDSLLQLCA 608  Oikopleura di...
EJD76471      493 NESRLPRSSAEHFTRTVHEahmyhpcl--mvprssrrHYTMRDDEGFIICHYAGDVCYDTAQFLDKNNDTLHGSLQCLML 570  Loa loa
ADY40738      536 DEARLPRPSCKHFTAGVHQahrnhallaaprlskireQRAMQDDEGFVVRHYAAPVCYDTRLFLEKNSDSLHVSLNSLME 615  pig roundworm
Feature 1                                                                                         
4DBQ_A        584 ESRdkfirelfess----tnnnkdtkqkaGKLSFISVGNKFKTQLNLLLDKLRSTGASFIRCIKPNLKMTSHHFEGAQIL 659  pig
JAA63808      665 ETKnsflralf----------dvgekqskGKLSFISVGSKFRSQLQALMHKLQQTGTHFVRCIKPNLRMVDHCFEGGQIL 734  Rhipicephalus...
EDV24561      585 ESKdlflkgvfcrev--esdkpkskksntSKLALVSVGNKFKTQLKELMSKLESTGSSFIRCIKPNGTMSSNVFEGGSVL 662  Trichoplax ad...
ADY41485      579 NSSitfiqglfakkendqsarnrgrtipsNKLIIASVSSKFRTQLGVLLKKLEITGTHFVRCIKPNSKMRAGLFEGSQIL 658  pig roundworm
CDJ97549      637 QSSvpfirnlfegsh--apepapgrrsgsGRLQAATVGGKFRSQLTILLEKLRETGTHFVRCVKPNSTMSAGICDGAAIL 714  barber pole worm
NP_490856     617 QSSfplvvslfts-------eatgavktgGRLKAVSVGAKFKSQLSSLLDKLNNTGTHFVRCVKPNSQMKAWHFDGSAIL 689  nematode
NP_001023548  637 QSTirllvslf----------gstayptkSKLKALSVGAKFKNQLSTLLIKLESTGTHFVRCIKPNNQMIPFEFDGSAIL 706  nematode
CBY09893      609 TAKhsilikmfa--------gdakrktgrGKLQLKSNGSTFRTNLNILMEKLNSTGSSFIRCIKPNEKMAPQEFNGASIM 680  Oikopleura di...
EJD76471      571 QSRkslvcelftdse---fsnpekrdvslGKLMNASVGNKFRSQLNILLAKLRETGTHFVRCIKPNSEMKSNHFDGAQIL 647  Loa loa
ADY40738      616 QSTnpliatlfhrtd--lptnapksasssKKLLAESVSRKFRLQLDILIDKLRRTGTHFVRCIKPNSEMTAGKFDGAAIM 693  pig roundworm
Feature 1                                                                                  
4DBQ_A        660 SQLQCSGMVSVLDLMQGGFPSRASFHELYNMYKKYMPDKLARLDPRLFCKALFKALGLNEIDYKFGLTKVFFR 732  pig
JAA63808      735 SQIKCSGMTSVLELMQQGYPSRAPFSDLYNMYKQYLPPELARLDPRLFCKALFKALGLNEKDFKFGLTKVFFR 807  Rhipicephalus pulche...
EDV24561      663 SQLQCAGMVSVLKLMQTGFPSRTSFKDLYQRYKGILPEKLACLDPRLFCKALFRAVGMNDQDFQFGLTKVFFR 735  Trichoplax adhaerens
ADY41485      659 SQLECSGMMSVLKLMHQGYPSRTVFADLYETYKSCLPPHLARLHPRLFCKCLFRALGLNERDYKFGLTKVFFR 731  pig roundworm
CDJ97549      715 SQLKCAGMASVLKLMQKGFPSRTSFADLYEMYRRQLPPDLARLDPRLFCKCLFHALGLNNVDYKFGQTKVFFR 787  barber pole worm
NP_490856     690 GQLQCAGMASVLRLMQEGFPSRTSFADLYAMYEKNLPPSLARLDPRLFSKCLFHALGLDQNDFQFGNTKVFFT 762  nematode
NP_001023548  707 SQLQCAGMTSVLKLMQDGFPSRTGFGDLYACYQKKLPPKLSKLDPRMFCKCLFRALGLDQHDFQFGLTKVFFR 779  nematode
CBY09893      681 SQLHSAGIPAVLELMQAGYPSRTHFSDLYGMYKKHMPAKLSKLDPKLFTRALFQALGLNTNDFTYGVSKVFFK 753  Oikopleura dioica
EJD76471      648 LQLKCSGMSSALKVMQRGFPSRMSYLSLYNAYQKYLPSKLATLDVQLLCKCLFRVVGLEEKDYKFGLTKAFFR 720  Loa loa
ADY40738      694 DQLKCAGMASVVRVMQAGFPSRTSFGGIFEHYRALLPHQLARLDPRLFCKCLFHALGLNENDFAFGLTKAFFR 766  pig roundworm

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