1OSM,1FEP,1MPR


Conserved Protein Domain Family
OM_channels

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cd01345: OM_channels 
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Porin superfamily. These outer membrane channels share a beta-barrel structure that differ in strand and shear number. Classical (gram-negative ) porins are non-specific channels for small hydrophillic molecules and form 16 beta-stranded barrels (16,20), which associate as trimers. Maltoporin-like channels have specificities for various sugars and form 18 beta-stranded barrels (18,22), which associate as trimers. Ligand-gated protein channels cooperate with a TonB associated inner membrane complex to actively transport ligands via the proton motive force and they form monomeric, (22,24) barrels. The 150-200 N-terminal residues form a plug that blocks the channel from the periplasmic end.
Statistics
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PSSM-Id: 238655
Aligned: 3 rows
Threshold Bit Score: 223.849
Created: 10-Jan-2006
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1OSM_A  15 GKIDGLHYfsddkdvdgdqtymrlgvkgetqindqltgygqweynvqanntesssdqawtr------------------- 75  Klebsiella pneumoniae
1FEP_A 155 GSWDAYFNapehkeegatkrtnfsltgplgdefsfrlygnldktqadawdinqghqsaragtyattlpagregvinkdin 234 Escherichia coli
1MPR_A   7 ARSGIGWTgsggeqqcfqatgaqskyrlgnecetyaelklgqevwkegdksfyfdtnvaysvnqqndwestdpafreanv 86  Salmonella typhimurium
1OSM_A     --------------------------------------------------------------------------------     Klebsiella pneumoniae
1FEP_A 235 gvvrwdfaplqsleleagysrqgnlyagdtqntnsdsytrskygdetnrlyrqnyaltwnggwdngvttsnwvqyehtrn 314 Escherichia coli
1MPR_A  87 qgknli-------------------------------------------------------------------------- 92  Salmonella typhimurium
1OSM_A  76 -----------------------------------------------------------------------------laf 78  Klebsiella pneumoniae
1FEP_A 315 sripeglaggtegkfnekatqdfvdidlddvxlhsevnlpidflvnqtltlgtewnqqrxkdlssntqaltgtntggaid 394 Escherichia coli
1MPR_A  93 ----------------------------------------------------ewlpgstiwagkrfyqrhdvhmidfyyw 120 Salmonella typhimurium
1OSM_A  79 aglkfgdagsfdygrnygvvydvtswtdvlpefggdtygsdnflqsranGVATYRNSdffg-lvdGLNFALQYQGkngsv 157 Klebsiella pneumoniae
1FEP_A 395 gvsttdrspyskaeifslfaennxeltdstivtpglrfdhhsivgnnwsPALNISQGlg-----dDFTLKXGIARaykap 469 Escherichia coli
1MPR_A 121 disgpgagienidlgfgklslaatrsteaggsytfssqniydevkdtanDVFDVRLAglqtnpdgVLELGVDYGRanttd 200 Salmonella typhimurium
1OSM_A 158 sgegatn---------------------ngrgalkqngdgFGTSVTYDif---dgISAGFAYANskrtddqnq------- 206 Klebsiella pneumoniae
1FEP_A 470 slyqtnpnyilyskgqgcyasaggcylqgnddlkaetsinKEIGLEFKrd----gWLAGVTWFRndyrnkieagyvavgq 545 Escherichia coli
1MPR_A 201 gykl----------------------------adgaskdgWMFTAEHTqsmlkgyNKFVVQYATdamttqgkgqargsdg 252 Salmonella typhimurium
1OSM_A 207 ----------------lllgegdhaETYTGGLKYDan-----nIYLATQYTQTYnatrags--lgfankaQNFEVAAQYQ 263 Klebsiella pneumoniae
1FEP_A 546 n-------avgtdlyqwdnvpkavvEGLEGSLNVPvs----etVXWTNNITYXLksenkttgdrlsiipeYTLNSTLSWQ 614 Escherichia coli
1MPR_A 253 sssfteelsdgtkinyankvinnngNMWRILDHGAislgdkwdLMYVGMYQNIDwdnn---------lgtEWWTVGVRPM 323 Salmonella typhimurium
1OSM_A 264 Fdf----gLRPSVAYLQSKgkdlngy------------gdqdilKYVDVGATYYfnk--------nmSTYVDYKInlldd 319 Klebsiella pneumoniae
1FEP_A 615 Are----dLSXQTTFTWYGkqqpkkynykgqpavgpetkeispySIVGLSATWDvtk--------nvSLTGGVDNlfdkr 682 Escherichia coli
1MPR_A 324 YkwtpimsTLLEVGYDNVKsqqt-----------------gdrnNQYKITLAQQwqagdsiwsrpaiRIFATYAKwdekw 386 Salmonella typhimurium
1OSM_A 320 nsft-------------------rsagistdDVVALGLV 339 Klebsiella pneumoniae
1FEP_A 683 lwragnaqttgdlaganyiagagaytynepgRTWYXSVN 721 Escherichia coli
1MPR_A 387 gyikdgdnisry---aaatnsgistnsrgdsDEWTFGAQ 422 Salmonella typhimurium
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