Conserved Protein Domain Family
Met_dep_hydrolase_E

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cd01313: Met_dep_hydrolase_E 
Metallo-dependent hydrolases, subgroup D is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Statistics
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PSSM-Id: 238638
Aligned: 7 rows
Threshold Bit Score: 513.542
Created: 10-Jan-2006
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
active site
Feature 1:active site [active site]
Evidence:
  • Comment:active site is based on homology to other members of the amidohydrolase family

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                        # #                            
NP_501669    13 AWIDGKIEenvsisvdetGKIVGINkkifden--vhlsnhVLLPGFINTHSHAFHRHLRGkseig----ksaaDTFWKWR 86  Caenorhabditis e...
AAC15070     12 LYTGGRFHegrglavsadGRILAPEcvpagar-tvalpgrALLPGLVNGHSHAFQRLIRGrteyva--sgreaDDFWSWR 88  Myxococcus xanthus
NP_627291    15 AWLGTHVEpgval-dvrdGRITAVNqgvatpppgagilrgLTLPGLANAHSHAFHRALRGtvq-------vgsGTFWTWR 86  Streptomyces coe...
ZP_00007237   9 ALLPEGWArdvti-riegGKIASVLpgtaaga--eavrvgCLLPAPVNLHSHAFQRAMAGltegr---gpdgqDSFWTWR 82  Rhodobacter spha...
ZP_00032723  23 AYLPDGWHrnvllewdanGTLTAVTpdtstvadgvqkaagPLLPGMPNLHSHAFQRAMAGlteyraasgagatDNFWSWR 102 Burkholderia fun...
NP_108438     9 ALLPEGWQgnvri-tldeGRIASVEadaapqa--gderhaILVPGMPNLHSHAFQRGMAGlaelr----gpsaDSFWSWR 81  Mesorhizobium loti
NP_253793     9 ALLPEGWArnvrfeisadGVLAEIRpdanadg--aerlggAVLPGMPNLHSHAFQRAMAGlaeva----gnpnDSFWTWR 82  Pseudomonas aeru...
Feature 1                                                                                       
NP_501669    87 DNMYGLVAEVtkekiyqyclsTFKEMINAGITTVGEFHYVHHseqkf------dldqlVIQAAIDAGIRIVLLQTLYERA 160 Caenorhabditis e...
AAC15070     89 EAMYRAAESLspedlyvasrqAFVEMALAGITTVGEFHYVHHqsdgtpyadrntlahaVIRAARDVGLRICLLRVGYARA 168 Myxococcus xanthus
NP_627291    87 EVMYSVADRLtpdtyhalaraVYAEMALAGITAVGEFHYVHHapggtpyadpnamgeaLIEAAAEAGVRITLLDTCYLSS 166 Streptomyces coe...
ZP_00007237  83 RLMFRFLESLtpdeveaiaafAQIEMLEAGFAAVAEFHYLHHrpdgrayadpaemaarICAASETSGLGLTLLPVLYQQG 162 Rhodobacter spha...
ZP_00032723 103 ELMYRFAARItpeglasvaqwLYIEMLKAGYTSVCEFHYVHHmpggeryanqaelaqrVVDAASASGIGMTMLPVLYQYS 182 Burkholderia fun...
NP_108438    82 EVMYRFALAMtpdqveavaaqLYVEMLEAGFSRVGEFHYLHHdrdgnpyanlaemaerIAAAAGETGIGLTLLPVFYAHS 161 Mesorhizobium loti
NP_253793    83 ELMYRMVARLspeqieviacqLYIEMLKAGYTAVAEFHYVHHdldgrsyadpaelslrISRAASAAGIGLTLLPVLYSHA 162 Pseudomonas aeru...
Feature 1                                                                               #       
NP_501669   161 GFDspavhpvQERFIAsyedfignlek--lrkekthervqIGVAAHSARAVPFENIKKLFEYasehkipFHIHLEEQPKE 238 Caenorhabditis e...
AAC15070    169 GFGvaa-nprQRRFIDpdvetflgsvealarevradaavsVGLAPHSVRAVPREWLAALASAsvr-slpVHMHVAEQPKE 246 Myxococcus xanthus
NP_627291   167 GFGepp-nthQRRFSDgtadawaerc----svlkerdharIGAAIHSVRAVPADQLATVAQWaeerrapLHVHLSEQTAE 241 Streptomyces coe...
ZP_00007237 163 GCDgralapgQVRFGSdlasyaglldgarralaglpadatLGVAPHSLRAVSAQGLQAAVALags--gpIHMHLAEQAAE 240 Rhodobacter spha...
ZP_00032723 183 GFGsraprddQRRFINtpeslldllgtl-raarpessalrYGVAPHSLRAVSADSLRALLGGidg-tapVHIHIAEQTAE 260 Burkholderia fun...
NP_108438   162 SFGgaapnegQRRFINdvnrfsrlveks-sdsvralnqavVGVAPHSLRAATPEELTQVAALapn--gpIHIHVAEQVKE 238 Mesorhizobium loti
NP_253793   163 GFGgqpasegQRRFINgseaylellqr--lrapleaaghsLGLCFHSLRAVTPQQIATVLAAghd-dlpVHIHIAEQQKE 239 Pseudomonas aeru...
Feature 1                                      #                                                
NP_501669   239 IfdcqkfigqkqGPSDLILSkmhLNEYFTAVHSTFtp-anNMLLFskl---gaNVSICPCTEGYLGDGipRINESLk--- 311 Caenorhabditis e...
AAC15070    247 Ieacla--ehgrRPVELLADlglLGPGFTAVHGVHlt-deEVSLLgra---eaTVCACPSTERNLGDGivPADALVtaga 320 Myxococcus xanthus
NP_627291   242 Ndacrq--ahgrTPTRLLADhgvLGARTTGVHNTHlt-deDIALLggs---rtGTCMCLTTERDLADGigPAAALQrags 315 Streptomyces coe...
ZP_00007237 241 Vaevea--algaRPVSWLLDhqpVDARWCLIHCTPdaarxETDRAgpdrgagsRVSVRGDGSPNLGDGifDGARYLaagg 318 Rhodobacter spha...
ZP_00032723 261 Vdacle--tegaRPVQWLLDrfdVDSRWCLVHATHvd-tnETLALars---gaVAGLCLTTEANLGDGifPAQDYLdaqg 334 Burkholderia fun...
NP_108438   239 Vedcla--wsgaRPVEFLLAntkIDQRWCLIHATHmt-daETIGMarr---gaIAGLCPITEANLGDGtfAAPLFTehgg 312 Mesorhizobium loti
NP_253793   240 Vddcqa--wsgrRPLQWLYEnvaVDQRWCLVHATHad-paEVAAMars---gaVAGLCLSTEANLGDGifPATDFLaqgg 313 Pseudomonas aeru...
Feature 1             #                                                                         
NP_501669   312 -ISFGTDCNNricFLEEMRWACFSQQMlnnsrsv-------cglspekLLLCaTIDGARALSLtsktGSLEVGKYFDAIS 383 Caenorhabditis e...
AAC15070    321 rISLGSDSQAtvdLLDEARQLEGHLRLsrlrravldpgggamdglaarLLDMaTVDGARSLGLa--tGALEAGAPADFFT 398 Myxococcus xanthus
NP_627291   316 pLSLGSDSHAvvdLLEEARAMELNERLrtrarg---------hwtaaaLLRAaTADGHAALGWdd-tGRIEAGARADLAT 385 Streptomyces coe...
ZP_00007237 319 rFGIGSDSNIriaLSEELRQLDYSQRLrdrvrapfa---taggssgrvLHEAaLAGGAQAAGRa--sGALAPGLWADLLA 393 Rhodobacter spha...
ZP_00032723 335 rIGVGSDSHIgvdWRAELRLLEYGQRLthrqrnvlas--aqatrvadrLYDAaLAGGAHATGRa--vGALQPGRRADWLV 410 Burkholderia fun...
NP_108438   313 rFGIGSDSNVligLPDELRQLEYSQRLahrarnvla---vaggstgraLFAAaLDGGIQALGAg--aSQIAAGAAADLVS 387 Mesorhizobium loti
NP_253793   314 rLGIGSDSHVslsVVEELRWLEYGQRLrdrkrnrlyr--ddqpmigrtLYDAaLAGGAQALGQp--iGSLAVGRRADLLV 389 Pseudomonas aeru...
Feature 1                                             
NP_501669   384 FsldsPLLENSLADTLIDSLVLsagnr-eisnVFVSGV 420 Caenorhabditis elegans
AAC15070    399 VdlhhPSLVGALPASLLPAIVLgaeka-avrdVVVGGR 435 Myxococcus xanthus
NP_627291   386 IaldsVRTAGPLPRLGAETAVFaataa-dvrhTVVGGR 422 Streptomyces coelicolor A3(2)
ZP_00007237 394 LdrgaVDLEGRSGDGLLDAWIFagsdr-mvseVWSAGR 430 Rhodobacter sphaeroides
ZP_00032723 411 LdadhSSIAEHAPDTWLSGVVFcehgetpirdVYTGGE 448 Burkholderia fungorum
NP_108438   388 LdaghPSLAGKTGDAILDAWIFangs--kvdcVWVHGK 423 Mesorhizobium loti
NP_253793   390 LdgndPYLASAEGDALLNRWLFaggdr-qvrdVMVAGR 426 Pseudomonas aeruginosa PAO1

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