1K1D,1GKR


Conserved Protein Domain Family
Cyclic_amidohydrolases

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cd01302: Cyclic_amidohydrolases 
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Cyclic amidohydrolases, including hydantoinase, dihydropyrimidinase, allantoinase, and dihydroorotase, are involved in the metabolism of pyrimidines and purines, sharing the property of hydrolyzing the cyclic amide bond of each substrate to the corresponding N-carbamyl amino acids. Allantoinases catalyze the degradation of purines, while dihydropyrimidinases and hydantoinases, a microbial counterpart of dihydropyrimidinase, are involved in pyrimidine degradation. Dihydroorotase participates in the de novo synthesis of pyrimidines.
Statistics
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PSSM-Id: 238627
Aligned: 10 rows
Threshold Bit Score: 361.709
Created: 6-Mar-2002
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
active sitetetramer
Conserved site includes 6 residues -Click on image for an interactive view with Cn3D
Feature 1:active site [active site]
Evidence:
  • Structure:1K1D; Geobacillus stearothermophilus D-Hydantoinase

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                  # #                                                                   
1K1D_A        48 CYVFPGGIDPHTHLDmplggt-vtkddFESGTIAAAFGGTTTIIDFCLtnkgep--lkkaieTWHNKAngk--------a 116  Geobacillus st...
NP_376935     45 KLLLPGGVDNHVHIYkrylkv-ptsdtVEKSTLAAAFGGTTTVIDFAFsdiq------pnveERIKQFsss--------- 108  Sulfolobus tok...
ZP_00098721   49 LLVLPGFIDQHVHFMdptet---dredFIHGTTAAAMAGVTTVIEHTHsrpil----tvedfLKYKSYieer-------s 114  Desulfitobacte...
NP_883445     55 LWTLPGVIDPHVHFGfgsp-----etdFETESRNAALGGTTSVISFHRsadi------resfDAVRARaesq-------s 116  Bordetella par...
NP_489050     61 LLGFPGVVDAHMHIGiyqp----ldkdAVTESKAAAMGGVTTSLNYIRtgqyy-----lnkgGSYRDFfpevlalsagnf 131  Nostoc sp. PCC...
ZP_00000133   54 LLAMPGFIDLHFHAGmgsin--svyndLKLESRAAVAGGYTYVRSHLIigedgksgylkvidHIIKNAekv--------s 123  Ferroplasma ac...
NP_713816     58 TVIFPGFGDIHIHARedesgkhtykedFVSASAAAVNGGVIHVADMPNnpippi--densysKKRKLAdrs--------- 126  Leptospira int...
1GKR_A        50 KFVMPGVVDEHVHIIdmdlk--nrygrFELDSESAAVGGITTIIEMPItfpptt--tldaflEKKKQAgqr--------l 117  Arthrobacter a...
P27708      1461 LVRLPGLIDVHVHLRepggt---hkedFASGTAAALAGGITMVCAMPNtrppii--dgpalaLAQKLAeag--------a 1527 human
O66990        51 LIVCPGFIDIHVHLRdpgqt---ykedIESGSRCAVAGGFTTIVCMPNtnpp-------idnTTVVNYi----------- 109  Aquifex aeolicus
Feature 1                                            #                                           
1K1D_A       117 viDYGFHLMISeitddvLEELPkvlee---egitSLXVFmayknvf----------------------------qaddgt 165  Geobacillus st...
NP_376935    109 yvNYTFHIFANd----vTDNLKkafd----igfnSVKFMmieyagl----------------------------kstlag 152  Sulfolobus tok...
ZP_00098721  115 lvDFGFAAHIWpg---qYDQLEklwq----egiaYFKVFtctthgvp---------------------------gqnsas 160  Desulfitobacte...
NP_883445    117 ciDFGFHFGITsr--lhVDTLDeisrr---fgvsSYKLYmmykgaaglsk---------------------gftdiddgl 170  Bordetella par...
NP_489050    132 fvDYSYHVAPIas--qhIDEIPllfee---hgvtSFKIFmfyggyglhglsdqqnlflminkeerydfahfefimrgvtr 206  Nostoc sp. PCC...
ZP_00000133  124 ysDFSFNPMIGtm--dqANELEelin----kginAYKIYynayqgeegrnl-------------------giyvdedidd 178  Ferroplasma ac...
NP_713816    127 niHITLYAGIGp----dTKPLKks---------vPYKVFmgpsigel--------------------------ffhnnqt 167  Leptospira int...
1GKR_A       118 kvDFALYGGGVpg---nLPEIRkmhd----agavGFXSMmaasvpgmf-------------------------davsdge 165  Arthrobacter a...
P27708      1528 rcDFALFLGASsenagtLGTVAgs--------aaGLKLYlnetfsel--------------------------rldsvvq 1573 human
O66990       110 -lQKSKSVGLCrv--lpTGTITkgrkgkeiadfySLKEAgcvaftddg-------------------------spvmdss 161  Aquifex aeolicus
Feature 1                           #                                                         #  
1K1D_A       166 lYCTLLAakel--galVMVHAEngdvidyltkkaladgntd-piyhaltrppelegeatgRACQltel-agsqLYVVHVt 241  Geobacillus st...
NP_376935    153 lKRINEFiner--qgyVMIHAEdeelisalsnnlrgspk-----lhlltrpdetelsaaiRAIPli-----enGLIAHVs 220  Sulfolobus tok...
ZP_00098721  161 lHGAFTKvasf--ggrVLVHCEddsltaenekvlkgnnrdd-ghviqewrskaaeaisvaNVCFiake-tgahVTIAHLs 236  Desulfitobacte...
NP_883445    171 lWGALNAtrai-pgavLGVHCEnvevipwlrdplraagrdd-laawneqspdfleaenvhRVCYfagk-tgtpVNIVHLs 247  Bordetella par...
NP_489050    207 lMAEYPEard---yisLSLHCEvaeilnaytkivendsslsglhaysaarpphseglaisIAAYlahetncanINLLHLs 283  Nostoc sp. PCC...
ZP_00000133  179 iVIKVLStaskyrktrIIFHAEdnstvkyctanerekngl---dafsrgrppfaeaikidHIGHlalh-fgakIHIAHIs 254  Ferroplasma ac...
NP_713816    168 lEDTISSyvg----enVSFHCEdpeilekhqnetfh----------edrrpaeaettatdFALYliek-ynlrGKLCHYs 232  Leptospira int...
1GKR_A       166 lFEIFQEiaac--gsvIVVHAEnetiiqalqkqikaaggkd-maayeasqpvfqeneaiqRALLlqke-agcrLIVLHVs 241  Arthrobacter a...
P27708      1574 wMEHFETwps---hlpIVAHAEqqtv------------------------------aavlMVAQltq----rsVHICHVa 1616 human
O66990       162 vMRKALElasq-lgvpIMDHCEddklaygvinegevsall--glssrapeaeeiqiardgILAQrtg----ghVHIQHVs 234  Aquifex aeolicus
Feature 1                                                                                   #    
1K1D_A       242 caqAVEKIaearnk--gldvwGETCPQYLvldqsylekpnfegakYVWSPPLRekwhqeVLWNALkngqLQTLGSDQCSF 319  Geobacillus st...
NP_376935    221 sgkTLDLLpdk--------vkAEVVLHHLilskkvy--drrdsylFVTSPPVRdp---eEIWKRIn--kVSIIATDHNWF 285  Sulfolobus tok...
ZP_00098721  237 hpdVVGIVqeakea--gakvlAEICPQYLyleentl---aargsfGKFTPPSRsaresqELMELVgkgeLDILASDHAPS 311  Desulfitobacte...
NP_883445    248 sreALREVrrhrhegraapiyVETCPHYLflddrs-----pagtyAKVNPPVRsaadidAMWEGVcdgaITTIGSDHVPR 322  Bordetella par...
NP_489050    284 srkAMEAAlimqtafphinfrREVTVGHLlldvdt-----pngtwAKVNPPIRpradveYLWQAVlnhqVDWIVSDHACC 358  Nostoc sp. PCC...
ZP_00000133  255 sieAYEAVeryrnl--gvditIETEPHYLfyddsmw---rllgvfGKVNPPLRtsrdseFLIKKIserkIDSISSDVNAL 329  Ferroplasma ac...
NP_713816    233 tgeGLNKIkfakqk--gvkvtCEVTPTHLffdrsml--tpenrhwFQMNPPLRskedreRMLEGVkqgwIDYLATDHAPH 308  Leptospira int...
1GKR_A       242 npdGVELIhqaqse--gqdvhCESGPQYLnittdda---erigpyMKVAPPVRsaemniRLWEQLenglIDTLGSDHGGH 316  Arthrobacter a...
P27708      1617 rkeEILLIkaakar--glpvtCEVAPHHLflshddl--erlgpgkGEVRPELGsrqdveALWEDMa--vIDCFASDHAPH 1690 human
O66990       235 tklSLEIIeffkek--gvkitCEVNPNHLlfterev---lnsganARVNPPLRkkedrlALIEGVkrgiIDCFATDHAPH 309  Aquifex aeolicus
Feature 1                                                                                        
1K1D_A       320 dfkgqkelg--rgdftkipnGGPIIEDRVSILFSEGVKkgritlnqFVDIvSTRIAKLfglfpkk------gtivvgsDA 391  Geobacillus st...
NP_376935    286 dkevkenh----kefpdlvpGLPGVELRVPIILTEFIKrnlp-lykAIELlSENPAKInkldvg--------kidmgyRA 352  Sulfolobus tok...
ZP_00098721  312 tkrhkdsg-----siwtspfGLPGIDTTSSVMLTAVNNnkls-lagFVRMyAENPAKAlglypkk------gcirvgaDA 379  Desulfitobacte...
NP_883445    323 kratkdk------diwaasnGFPGTGMILPILLHEGYHrrqvpletLMRVaSGASARIygmpakg-------riavgnDA 389  Bordetella par...
NP_489050    359 saeqkrsakd-pnniwlaksGFGGTEYLLSGVVSEGSKrgms-ynhMAKLlSWNPSRRfglltkg-------diaigyDA 429  Nostoc sp. PCC...
ZP_00000133  330 nskqkiknankygniwdaspGFDNIQMTLPRLITKFVSsgilsyetLVYImSERPSQVigavnkg-------sisvgkDA 402  Ferroplasma ac...
NP_713816    309 sieek----------rkgtsGISQLDTYSLFVTWLVLKagve-lktVARIcAKNPGDFvneylpekfgkgfgriepgySA 377  Leptospira int...
1GKR_A       317 pvedkepgw---kdvwkagnGALGLETSLPMMLTNGVNkgrlslerLVEVmCEKPAKLfgiypqk------gtlqvgsDA 387  Arthrobacter a...
P27708      1691 tleekc--------gsrpppGFPGLETMLPLLLTAVSEgrls-lddLLQRlHHNPRRIfh----------------lpPQ 1745 human
O66990       310 qtfekel-------vefampGIIGLQTALPSALELYRKgiis-lkkLIEMfTINPARIigvdlg--------tlklgsPA 373  Aquifex aeolicus
Feature 1                                                 
1K1D_A       392 DLVIFDPNiervisaethhma--vdynafegmkvtGEPVSV 430  Geobacillus stearothermophilus
NP_376935    353 DLVIYDSEkkwrvsventhm---adwtpyegyeiiGKPDTI 390  Sulfolobus tokodaii
ZP_00098721  380 DLVLVDMKkkwtiqddgicsk--akwspfngfqctGKPVMT 418  Desulfitobacterium hafniense
NP_883445    390 DLVIVDPDlektvdpgelesh--adyspyegmrlkGWPVRT 428  Bordetella parapertussis
NP_489050    430 DLVLVDPNesfvvraaesesq--qgytpfegmeltGRVKST 468  Nostoc sp. PCC 7120
ZP_00000133  403 DIVLVDDKnyhkatpellenvpgldwnpeinkeftGWPYKI 443  Ferroplasma acidarmanus
NP_713816    378 NFTVLNLKkpkkflkeeiksk--sgwspfenfefpGSIEAV 416  Leptospira interrogans serovar lai str. 56601
1GKR_A       388 DLLILDLDidtkvdasqfrsl--hkyspfdgmpvtGAPVLT 426  Arthrobacter aurescens
P27708      1746 EDTYVEVDlehewtipshmpfskahwtpfegqkvkGTVRRV 1786 human
O66990       374 DITIFDPNkewilneetnlsk--srntplwgkvlkGKVIYT 412  Aquifex aeolicus

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