1DJ0,1Z2Z,1PRZ,1SB7,1K8W,1KSL,1SB7,1SI7,1SZW


Conserved Protein Domain Family
PseudoU_synth

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cd01291: PseudoU_synth 
Click on image for an interactive view with Cn3D
Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi).
Pseudouridine synthases contains the RsuA/RluD, TruA, TruB and TruD families. This group consists of eukaryotic, bacterial and archeal pseudouridine synthases. Some psi sites such as psi55,13,38 and 39 in tRNA are highly conserved, being in the same position in eubacteria, archeabacteria and eukaryotes. Other psi sites occur in a more restricted fashion, for example psi2604in 23S RNA made by E.coli RluF has only been detected in E.coli. Human dyskerin with the help of guide RNAs makes the hundreds of psueudouridnes present in rRNA and small nuclear RNAs (snRNAs). Mutations in human dyskerin cause X-linked dyskeratosis congenitas. Missense mutation in human PUS1 causes mitochondrial myopathy and sideroblastic anemia (MLASA).
Statistics
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PSSM-Id: 211324
Aligned: 97 rows
Threshold Bit Score: 32.5364
Created: 13-Dec-2003
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
active site
Conserved site includes 5 residues -Click on image for an interactive view with Cn3D
Feature 1:active site [active site]
Evidence:
  • Comment:1DJO_A, PDB D60 is key conserved residue
  • Structure:1djo_a, active site residues

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                        
1DJ0_A        10 IEYDgskyygwqrqnevrsvqek----------------------------------------lekalsqvanepitvfc 49  Escherichia coli
O60832        94 LDKPsnpsshevvawi-----------------------------------------------------rrilrvektgh 120 human
1PRZ_A        22 INKPrdlvvhpgagnpdgtvln-----------------------------------------allhyyppiadvpragi 60  Escherichia coli
NP_638299     68 LNKPagmsceaavalatpqsrss---------------------------------------ldqteirvlkrhflrlsa 108 Xanthomonas cam...
Q46918        14 VNKPsgwlvhrswldrdekvv--------------------------------------------vmqtvrdqigqhvft 49  Shigella flexneri
Q12362       173 IDKPssipvhptgryrfnti----------------------------------------------tkmlerqlgysvhp 206 baker's yeast
YP_056974     88 VDKPhflssiprgrhvlesv---------------------------------------------vvrlrtqlglpeltv 122 Propionibacteri...
Q9SMH4       140 VDKPphwevpevvaav-----------------------------------------------------qratgadkvas 166 Chlamydomonas r...
NP_001002200   7 VYKPqgvhwklvrdtiesnflkalnssppaaprrevqfqllssgenstskelilspsmvpsladhplvtgpqfhkvhvgv 86  zebrafish
XP_421776     23 VYKPkgptsaavlnllkerllaea--------------------------------------gvqtkdkkrkrqalkigh 64  chicken
Feature 1         ####                                                                           
1DJ0_A        50 aGRTDAGVHGTgQVVHfettalrkdaawtlgvnanlpgdiavrwvktvpddfharfsataRRYRYIIYnhrlrpavlskg 129 Escherichia coli
O60832       121 sGTLDPKVTGC-LIVCieratrlv-----------------------------ksqqsagKEYVGIVRlhnaieggtqls 170 human
1PRZ_A        61 vHRLDKDTTGL-XVVAktvpaqtrlv-------------------------eslqrreitREYEAVAIghxtaggtvdep 114 Escherichia coli
NP_638299    109 pMPLDDEASGL-LVLSqdgrilrrl---------------------------tadaatieQEYLVEVRgelrpygmarla 160 Xanthomonas cam...
Q46918        50 aHRLDRPTSGV-LLMGlsseagrlla-------------------------qqfeqhqiqKRYHAIVRgwlmeeavldyp 103 Shigella flexneri
Q12362       207 cNRLDKPTSGL-MFLAktplgadrmg-------------------------dqmkarevtKEYVARVKgefpigivevdk 260 baker's yeast
YP_056974    123 aHRLDRVTAGV-LLLTrerkwrrpyq-------------------------eiferrevvKKYRLVAPvvhdpagegvta 176 Propionibacteri...
Q9SMH4       167 vAPLDARASGL-MLLCfgsatrla-----------------------------prveraaKRYTGTLVlggsslsgdvrg 216 Chlamydomonas r...
NP_001002200  87 gHRLDAFSSGV-LVLGvgkgnsvle---------------------------hlckshvtRDYTIEGEfgkatdnfshtg 138 zebrafish
XP_421776     65 gGTLDSAATGV-LVVGigkgtkll-----------------------------ktilagsKKYTAIGLlgratdtldatg 114 chicken
Feature 1                                                                                        
1DJ0_A       130 vthfyepldaermhr------------------------------------aaqcllgendftsfravqcqsrtpwrnVM 173 Escherichia coli
O60832       171 raletltg--------------------------------------------------alfqrppliaavkrqlrvrtIY 200 human
1PRZ_A       115 isrh----------------------------------------------------------ptkrthxavhpxgkpaVT 136 Escherichia coli
NP_638299    161 -------------------------------------------------------------------sglvyqqrslpAC 173 Xanthomonas cam...
Q46918       104 lveel--------------------------------------------------------dkiadkfaredkgpqpaVT 127 Shigella flexneri
Q12362       261 pvrsvnp-----------------------------------------------------kvalnavcemsdenakhaKT 287 baker's yeast
YP_056974    177 tksgwqvrs-------------------------------------------------riikergilqarevpgvpnaVT 207 Propionibacteri...
Q9SMH4       217 gsfraaqlpaehltdedlreaaqglvtaaagapvhgavatghqgggglalrvlprtwrlrqlpssteyyeervepsmrTL 296 Chlamydomonas r...
NP_001002200 139 rviekttydhithdklervlamlqg----------------snqkalitysqvdlqtqeayelaargllypdgksppiLT 202 zebrafish
XP_421776    115 kvteekpydqvtksdlenvlqkftg----------------dimqvpplysalkrdgerlstlmkrgeaveakparpvRV 178 chicken
Feature 1                                                                            #       
1DJ0_A       174 HINVTRhgp-------------------------------------------yvVVDikanafvhHMVRNIVGSLM 206 Escherichia coli
O60832       201 ESKMIEydpe----------------------------------------rrlgIFWvsc--eagTYIRTLCVHLG 234 human
1PRZ_A       137 HYRIXEhfr------------------------------------------vhtRLRlrletgrtHQIRVHXAHIT 170 Escherichia coli
NP_638299    174 KVSWQNe----------------------------------------------eRLRfaikhvqpGQLRYMCNEVG 203 Xanthomonas campest...
Q46918       128 HYRGLAtvempvatg-------------------------------rypttrygLVElepktgrkHQLRRHLAHLR 172 Shigella flexneri
Q12362       288 VFQRVSydg------------------------------------------qtsIVKckpltgrtHQIRVHLQYLG 321 baker's yeast
YP_056974    208 DIALIGehg------------------------------------------gwgLYEasprtgrtHQIRLHMQRLG 241 Propionibacterium a...
Q9SMH4       297 DMELLDfrvwresalshndgaagaeydqhdqhkqelgrglvwtrspphprpvvlRFSall--vgrSHVRSLIAMYG 370 Chlamydomonas reinh...
NP_001002200 203 GLRCIKfnpp----------------------------------------hftlEVRcvn--etqKYLRKLIHEVG 236 zebrafish
XP_421776    179 YSLSLRqfqp-----------------------------------------plfTLDvec--gggFYVRSLVSDIG 211 chicken

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