1ZC3,1ZC4


Conserved Protein Domain Family
PH_RalBD_exo84

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cd01226: PH_RalBD_exo84 
Click on image for an interactive view with Cn3D
Exocyst complex 84-kDa subunit Ral-binding domain/Pleckstrin Homology (PH) domain
The Sec6/8 complex, also called the exocyst complex, forms an octameric protein (Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84) involved in the tethering of secretory vesicles to specific regions on the plasma membrane. The regulation of Sec6/8 complex differs between mammals and yeast. Mamalian Exo84 and Sec5 are effector targets for active Ral GTPases which are not present in yeast. Ral GTPases are members of the Ras superfamily, and as such cycle between an active GTP-bound state and an inactive GDP-bound state. The Exo84 Ral-binding domain adopts a PH domain fold. Mammalian Exo84 and Sec5 competitively bind to active RalA. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Statistics
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PSSM-Id: 269933
Aligned: 21 rows
Threshold Bit Score: 108.898
Created: 4-Feb-2003
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
RalA bindinghomodimer
Conserved site includes 22 residues -Click on image for an interactive view with Cn3D
Feature 1:RalA binding site [polypeptide binding site]
Evidence:
  • Structure:1ZC4; Rat Exo84-RBD/PH domain binds GMPPNP-bound RalA, contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                               ## #                                        ##########   
1ZC3_B         1 LETPGQYLVYNGDLVEYE-----ADHMAQLQRVHGFLMNDCLLVATWLPQRRg-----mYRYNALYPLDRLAVVNVKD-- 68  Norway rat
1ZC4_B         1 LETPGQYLVYNGDLVEYE-----ADHMAQLQRVHGFLMNDCLLVATWLPQRRg-----mYRYNALYPLDRLAVVNVKD-- 68  Norway rat
NP_651454    131 GNLEGKTFLNEGALIELD-----SNDYRPIQRVFFFLFNDVLIVCKVKHDKR-------LDFLTEYDPKKIAVINIKD-- 196 fruit fly
NP_001103945 142 METPGRYLVYNGDLLEYD-----ADNMSQIQKVHAFLMNDCLLIATWLANRRga---vkYKYNALYDLESFAVVNVKD-- 211 zebrafish
XP_002590557 135 TEVPGRYLVHSGGLVELD-----PDSNTQIQRVHTFLMNDSLMVASWIASRRgp---vhYKFQALYELDSLAVVNIRD-- 204 Florida lancelet
XP_002121066 149 IDAPGRYLVHDGDVSELD-----TDSFNQISKIHLFLFNDSLMVTTWVGTRRgnavagkYKYQVLIPIDTLAIVNARD-- 221 Ciona intestinalis
XP_001639873 115 IDMTDLQCIYEGGLLEID-----TSTYLPKQKIRAFLLHDSMIIASIITNRRgp---vrYKFQALFELENVAVVNLKS-- 184 starlet sea ane...
XP_001857988 137 GNLDDKVFIYEGGLIELD-----TNDYRPICRIHLFLFNDVLVLAKVKHDKK-------LEFLTEYDTKKIAVINIKDl- 203 southern house ...
CBY09796     144 VLAPGRYLVHDGDVTELD-----QNDFSEIGKLRLFLLNDSLIVTKASGERQrsrkeakLKFQNLYSLEGLPVVNVKErd 218 Oikopleura dioica
AEO33903     131 VEGCTRLLDVKDRHIVRSgemieIREDNTECKIYLVLLSDGLLLADWLPHRRgp---vqYRFQMLYELDNLAVVNVKE-- 205 Amblyomma macul...
Feature 1        #       # ###                     #  #   #  #
1ZC3_B        69 NPPMKDMFKLLMFPESRIFQAENAKIKREWLEVLEETKRALSDKR 113 Norway rat
1ZC4_B        69 NPPMKDMFKLLMFPESRIFQAENAKIKREWLEVLEETKRALSDKR 113 Norway rat
NP_651454    197 LDGVKNAINIITPDGSKIYQSITAAGKTEWIEKLEEAFRFDQQKK 241 fruit fly
NP_001103945 212 NPPMKDMFKILMFPDSRIFKAENSKIKKEWLEILEETKKNKVAKD 256 zebrafish
XP_002590557 205 AGPMKNSFKVLVFPDCRVFQAESPKAKREWLDSLDQAKKSKAAAD 249 Florida lancelet
XP_002121066 222 VGPVKNAFNVLVLPESRMFQCENSKEKREWLEIMDSTKRKHLADR 266 Ciona intestinalis
XP_001639873 185 SEGVKDAFKILLFPETHLYQAESAQAKNDWLNHIEECKISFKLKL 229 starlet sea anemone
XP_001857988 204 DGVNKNAINVITSDGARIFQCVNSASKLEWIDKFEVAIKFHQLKH 248 southern house mosquito
CBY09796     219 MGTKKNCVKVMSFPEPRLFQCPTPKEKRQWLEIVEETKLSAKSKP 263 Oikopleura dioica
AEO33903     206 DQRSKNCFKILTFPHARQFQCETAAEKRLWMEAIEQTKQAKMAVV 250 Amblyomma maculatum

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