Conserved Protein Domain Family
PTB_Rab6GAP

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cd01211: PTB_Rab6GAP 
GTPase activating protein for Rab 6 Phosphotyrosine-binding (PTB) domain
GAPCenA is a centrosome-associated GTPase activating protein (GAP) for Rab 6. It consists of an N-terminal PTB domain and a C-terminal TBC domain. PTB domains have a common PH-like fold and are found in various eukaryotic signaling molecules. This domain was initially shown to binds peptides with a NPXY motif with differing requirements for phosphorylation of the tyrosine, although more recent studies have found that some types of PTB domains can bind to peptides lack tyrosine residues altogether. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. PTB domains are classified into three groups: phosphotyrosine-dependent Shc-like, phosphotyrosine-dependent IRS-like, and phosphotyrosine-independent Dab-like PTB domains. This cd is part of the Dab-like subgroup.
Statistics
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PSSM-Id: 269922
Aligned: 31 rows
Threshold Bit Score: 170.122
Created: 1-Nov-2000
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putativeputative
Feature 1:putative phosphoinositide binding site [chemical binding site]
Evidence:
  • Comment:based on the phosphoinositide binding site of Dab1
  • Comment:this is in a similar region as the phosphoinositide binding site found in PH domains.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1               #                                                                         
NP_055672     129 VLFNKLTYLGCMKVSSPrNEVEALRAMATMKSS-----------------------SQYPFPVTLYVPNVPEGSVRIIDQ 185  human
NP_508178      11 TQFTNVQYLGCSQLVNNdNDNEMKALMKVLDEQk----------------------GAQTINVTLVVPHNISGTVKLIDA 68   nematode
XP_002609247  144 VIFNGVTYLGCSAVNAPrSEMEAQRCMSILRES-----------------------SQMSIDVVLSVPTTSEGTVRVLEP 200  Florida lancelet
XP_002109296    1 IFEGLTCLGSSTVNAPK-SETEAQRVMATMREN-----------------------SAKAIEVNLSVPSDVKGSVALLDP 56   Trichoplax ad...
XP_002131287  106 ILFNGVYYLGCASVNAPrSEMEALRTISILRAQqdpessyfrefnlpgqndtddnpLHKQIEVVLSVPNRADGTVRLLEP 185  Ciona intesti...
NP_001106541  145 VLFSKLTYLGCASVNAPrSEVEALRMMSILRGQ-----------------------CQNALDVTLSVPNVSEGTVRLLDP 201  western clawe...
XP_415391     145 VVFSKLTYLGCASVNAPrSEVEALRMMCILRSQ-----------------------CQISLDVTLSVPNVSEGTVRLLDP 201  chicken
XP_003201657  142 VVFSKLTYLGCASVNAPrSEVEALRMVSILRSQ-----------------------CQMPLDVTLSVPGVSEGTVRLLDP 198  zebrafish
EFO24458       45 ATMEQISYLGCAKIENPsNETEILKIMQLLNKEr----------------------SEKPIDVILFIPESSSGIVRMCDG 102  Loa loa
ADY41213      108 AIMEQICYLGCAKIGNPsSEPEMVKIMQLLNKEr----------------------AQNPIDVILSIPDSALGIVRMFDG 165  pig roundworm
Feature 1                                    #                           #                        
NP_055672     186 sSNVEIASFPIYKVLFCARGhdGTTESNCFAFTESSh--------GSEEFQIHVFSCEIKEAVSRILYSFCTAFKRSSRQ 257  human
NP_508178      69 -QGKVLSSFSLVNIRFCIRGesSTSQNNCFGISFTHkisvgehnsSDILHQCHVFRTSKAETAAKALYSFSYAFSNKNVS 147  nematode
XP_002609247  201 -DGAEIAHYRVHRILFCCRGkqETREKDCFAFTSSHg--------NSDLFQCHVYRCQLLEAVPKIMFSFARAFKAVPKS 271  Florida lancelet
XP_002109296   57 iTGSEICSYPVTRILFCARGnpKAAEKDCFSFSSTYq--------KTEIFYIHVFQCTNQSLAEKVLKALGNAFRNMDVQ 128  Trichoplax ad...
XP_002131287  186 gVSGVMTSFKLYTILFCCRGadDSAEKDCFAFTESHq--------SSGIFQCHVFRCEVHEAVRKVLYSFELAFRSIPKS 257  Ciona intesti...
NP_001106541  202 qTNTEIAKYPIYKILFCVRGhdGTTESDCFAFTESHy--------NAELFRIHVFRCEVQEAVSRILYSFATAFRRSAKQ 273  western clawe...
XP_415391     202 qTNTEIANYPIYKILFCVRGhdGTPECDCFAFTESHy--------NAELFRIHVFRCEIQEAVSRILYSFATAFRRSAKQ 273  chicken
XP_003201657  199 qSSTEIANYPIYKILFCVRGhdGTPESDCFAFTESHy--------NTEIFRIHVFRCEIQEAVSRILYSFATAFRRSANK 270  zebrafish
EFO24458      103 tTKSEMVSFPVHRIKFCARGqlDSAERECFALSFTQkna---tptDVAIHQCHVFRCQVPEAAGKALLNFANAFRNNGTT 179  Loa loa
ADY41213      166 aSKTEMVSFPVHRIRFCARGqlDSAEKECFALSFTQqna---tatDAALHHCHVFRCQVPEAAGKALLCFANAFRNNNVG 242  pig roundworm

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