1FYJ,1R1B


Conserved Protein Domain Family
WHEPGMRS_RNA

?
cd01200: WHEPGMRS_RNA 
Click on image for an interactive view with Cn3D
EPRS-like_RNA binding domain. This short RNA-binding domain is found in several higher eukaryote aminoacyl-tRNA synthetases (aaRSs). It is found in three copies in the mammalian bifunctional EPRS in a region that separates the N-terminal GluRS from the C-terminal ProRS. In the Drosophila EPRS, this domain is repeated six times. It is found at the N-terminus of TrpRS, HisRS and GlyR and at the C-terminus of MetRS. This domain consists of a helix- turn- helix structure, which is similar to other RNA-binding proteins. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions, which are important for the formation of aaRSs into multienzyme complexes.
Statistics
?
PSSM-Id: 238605
Aligned: 61 rows
Threshold Bit Score: 44.8381
Created: 24-Sep-2002
Updated: 2-Oct-2020
Structure
?
Program:
Drawing:
Aligned Rows:
 
putative tRNA
Conserved site includes 8 residues -Click on image for an interactive view with Cn3D
Feature 1:putative tRNA binding site [nucleic acid binding site]
Evidence:

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1                     # #  #    #    #   #       #       #
1FYJ_A                6 YNRVAVQGDVVRELKAKKapkEDVDAAVKQLLSLKAEYKEKT 47   human
AAK92837             14 RERVQEQGNLVRDLKAKGapeIDVKKAVAELKARKKLLEDKE 55   fruit fly
P41250               68 RLAVRQQGDLVRKLKEDKapqVDVDKAVAELKARKRVLEAKE 109  human
Q10039               78 RAAVKEYGDLIRDLKAKGapkIDIDKAVVELKARKRLLEDTE 119  Caenorhabditis elegans
FlyBase:CG15100-PA  967 EDKIAQQAEKVRTLKATGd-aAVWKPEVDILLSLKNELAALT 1007 fruit fly
AAH77232             76 RLAVKEQGDLVRKLKEEKvpqVDVDRAVAELKARKRTLEAKE 117  African clawed frog
XP_391940            75 RDSVKEQGDYVRKLKFDGaseLDIKKAVVELKLRKKLLEEKE 116  honey bee
AAH96883             93 RLAVKEQGDLVRQLKAENapdVDVSKAVAELKARKRFLEAKE 134  zebrafish
NP_001026681         14 RQAVRHQGELVRKLKEEKapqVDIDRAVAELKARKRVLEAKE 55   chicken
XP_784166            19 RASVKEQGDLVRQMKEGGtpaHDIKRAVVELKARKKALEEKE 60   purple urchin

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap