Conserved Protein Domain Family
INT_tnpA_C_Tn554

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cd01186: INT_tnpA_C_Tn554 
Putative Transposase A from transposon Tn554, C-terminal catalytic domain
This family includes putative Transposase A from transposon Tn554. It belongs to a DNA breaking-rejoining enzyme superfamily. The catalytic domain contains six conserved active site residues. The recombination reaction involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA. Many DNA breaking-rejoining enzymes also have N-terminal domains, which show little sequence or structure similarity.
Statistics
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PSSM-Id: 271186
Aligned: 6 rows
Threshold Bit Score: 277.375
Created: 18-Apr-2013
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
active site
Feature 1:active site [active site]
Evidence:
  • Comment:The catalytic residue tyrosine is surrounded by three basic residues at the active site

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                               #                                     
P0A050    167 TLRSKEVKQIIDACh-----------tKRDKLILMLMYEGGLRIGEVLSLRLEDIvtw---dnQIHLTPRDvnv-neaYI 231 Staphylococcus aur...
CAA82325  163 TLTKEEITTLINTCn-----------nFRDKFLLNLLYETGIRIGEALSLWIEDFdis---dmIIDLKDRGelennaeIK 228 Clostridium butyricum
NP_765168 184 VLTNAEVKKLLEEAn-----------nIRDKFLIQLLYETGLRIGEVLSLRIDDIkfdfrkghQIVLKNRFnd---ngTY 249 Staphylococcus epi...
NP_898764 176 VLLPRQIQEILNGCavfdsatgewvgnLRDRFLFALLADTGMRLGEALGLRISDFvmgrggtpFVEIVPREdnt-ngaRV 254 Rhodococcus erythr...
AAB54012  175 VLAPNEVQAILDGCg-----------rLRDRLLFAVLYDTGMRIGEALGLRHNDIaaa---enEVTVRRRDnan--gaRA 238 Mycobacterium gord...
NP_049126 191 RLTPSEVLRLIEACg-----------lARDAFLVVLLYNTGLRIGEALGLRHVDIdla---ekVIWVVPREdna-neaRA 255 Novosphingobium ar...
Feature 1                                                                                    #
P0A050    232 KLRKERTIHVSKELmSLYTDYLIYeyseelehdy-------vfislkegyfGKPLKYQSVLDLVRRIVKRTgi--eFTSH 302 Staphylococcus aur...
CAA82325  229 TVSSPRRIDISQNLaDMFMEYVAEyhteevetnh-------vfikisgenqYKPMNYIDVDNLFRTLKKKTdi--hVTPH 299 Clostridium butyricum
NP_765168 250 LKTGERKIFISQSLiDLYDDYVYEiidelsicsdy------lfvkikgrnvGEAMNYSDIYSLFKRLKHKTsi--nVHPH 321 Staphylococcus epi...
NP_898764 255 KMMRQRRVYVGSDLeRLFADYLTYivcraaefgitldeqspllvnvmrpplLAALRETTVRDKVSALRRHGagpgdWTPH 334 Rhodococcus erythr...
AAB54012  239 KSQTDRTIPVSSALiRLWPTTFTAsygdldsdyv--------fvnlwgrpqGYPLTYGAVYDLVRRLRRRTgi--dFDPH 308 Mycobacterium gord...
NP_049126 256 KSGRTRGVPVHDYVlNMYVDYITSdeylpafesgae----yvftnvkagviGHAMSLSYAQKLAGLLEQRThi--aFSWH 329 Novosphingobium ar...
Feature 1       ##                               #           
P0A050    303 MLRHTHATQLIREGwdvafVQKRLGHAHVQTTLNTYVHLSDQDMKNE 349 Staphylococcus aureus subsp. aureus Mu50
CAA82325  300 IFRHTSLTILRMAGwepelLRIRAGHKNIYTTLQTYIHPSDKEITEE 346 Clostridium butyricum
NP_765168 322 LFRHTHATVFYNETkdikqVQERLGHSNIQTTINLYVHPTEEDIRED 368 Staphylococcus epidermidis ATCC 12228
NP_898764 335 WFRHTHATALLLAStpewvVSRRLGHAHVQTTLDLYGWVREDDALRA 381 Rhodococcus erythropolis
AAB54012  309 WLRHTAATRLLRDGvsievVAHLLGHAHVATTTTTYGHLSVEDARRV 355 Mycobacterium gordonae
NP_049126 330 MFRHSHASEAIAAGyslleVADRLGHASPQTTAAFYQHLFASEIRRL 376 Novosphingobium aromaticivorans

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