Conserved Protein Domain Family
TroA_c

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cd01145: TroA_c 
Periplasmic binding protein TroA_c. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Statistics
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PSSM-Id: 238565
Aligned: 11 rows
Threshold Bit Score: 187.322
Created: 10-Jan-2006
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative ligand
Feature 1:putative ligand binding site [chemical binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                         #                                           
NP_214486  16 AKLNVVVTYPWIGDLVDKIGKEkVKVYIIAkgTEDPHFVVPKPSHIAKLR---RADLLIIQGASleigFLPPLLSqsn-- 90  Aquifex aeolicus VF5
NP_759357   5 AGLNVFVCQPDWADLVRQHAPDaRIYSATTa-MQDPHYVQARPSLIAQMR---RADLVVCSGAEleigWLPELQRqsr-- 78  Vibrio vulnificus ...
NP_716200  16 AELNVFACEPEYAALAKELAPNaSIYSATTa-LQDPHQVQARPSLIAKMR---QADLVVCAGADleigWLPMLQMksana 91  Shewanella oneiden...
NP_800817  34 WALDIFVCEPEWKALLQRHAPEaNIYSATTd-KQDPHYVQARPSLIAKMR---QADLAMCSGAElevgWLPMLQArss-- 107 Vibrio parahaemoly...
CAB50430   22 EKPLVVTSLPAIASIIREAFGDsVNVVYLVppGVEPHQYQLSPSQIELLR---KADVIVTTGHLp---AEMKIQElke-- 93  Pyrococcus abyssi
NP_142492  24 HKPVVVTSLPSIASIIREALGDsVEIIYLVppGVEPHQYQLSPDQIALLR---KADVIVTTGHLp---AEMKVLElkk-- 95  Pyrococcus horikoshii
NP_558684  25 SAATIVVSFPAYDVVLKEAFPA-ANVVLLTkgVSDPHEYQLTASDVMFLRnltAGDVLVLSMHAp---FELRIAEm---- 96  Pyrobaculum aeroph...
AAB89271   29 EASTIVVTVPDFKPIVEAVAGDgFEVYSLLppGSDPHAFSLTVEDIEKMR---KADLIVLANSKll-dFEAKIASefsnt 104 Archaeoglobus fulg...
NP_147304  62 AGLLVVVTFPGLKSDVELIACSgDRVIEIYnpGVDPHEAQLDPRAARMVA---EADIVVTGGHTp---ADLKAAElasgt 135 Aeropyrum pernix
NP_897064  51 AQPSVVAVDGTLCDITRTVVGAaAKVTCLIppGGDPHGYRLKPSDRQAIA---TSAAVVHIGFG----LTPAANEitsp- 122 Synechococcus sp. ...
Q9ZEC9     48 KPKIVVSITPISSILAMLVKDK-VDIESLAvnNECPHHHNIKPSDITKVR---NADMVIYINEQfd-gFTEKLISn---- 118 Rickettsia prowazekii
Feature 1                                                                                     
NP_214486  91 --------npkIQPGTkgfldlstfieliekpkevsramgdvhpeGNPHY-NLDPHNIPVLAQAIKDRLclidp-gncef 160 Aquifex aeolicus VF5
NP_759357  79 --------npkVQNGQtglfwvsdyvqmldkheqldramgdvhahGNPHV-QFALADMPAVSRALADRLalidp-dnqsl 148 Vibrio vulnificus ...
NP_716200  92 -------kvhsTEQGLffaaeqidtldkl---asvdrsmgdvhakGNPHI-HFDPNRVLTVAKALTAKMsqlep-seaan 159 Shewanella oneiden...
NP_800817 108 --------naaVQNGAksmiyaasfvrmldthqhvdrsmgdihahGNPHV-QFAANDMITLSRVVTQCLqavdp-enapt 177 Vibrio parahaemoly...
CAB50430   94 ---------sgEIPGIvlgiedyerygf------rylperwyegkNNPHGiWLDPRNAIAIAKATANALltlhp--elke 156 Pyrococcus abyssi
NP_142492  96 ---------sgEIPGVvlsiedyerygf------rylperwytgkNNPHGiWLDPRNALAIAEATGDALvelhp-elkdv 159 Pyrococcus horikoshii
NP_558684  97 -----------AERGEvkarvidltkiqly--ltydgrltpyasgVNPHDhGVFPPNVFRLVEAVANAT----------- 152 Pyrobaculum aeroph...
AAB89271  105 ldfrdynaklyDFPGFe----------------------------SNPHGyWMLPENAVGIAKAVKDKLsemyp-gkkaq 155 Archaeoglobus fulg...
NP_147304 136 ------vvdvtRIPGIeilet--------------------pdgsPNLHYpIYHPENYRLFLSRLAEAMqekr---pecd 186 Aeropyrum pernix
NP_897064 123 --------gsvVAVGEqalp---------------------nykgDDPHV-WHDPANSAAMLSALSTALipvlpasetea 172 Synechococcus sp. ...
Q9ZEC9    119 ----------nNQNIIkisdik-----------------slttikNNWHI-WLDLNNAKILLQEFAQIFiknfp-qlqke 169 Rickettsia prowazekii
Feature 1                                                                                  
NP_214486 161 YGKNLNEFLAKWNEKLEVWDREFSTFRGTRvi--syHSVFNYLLRRYGv----------vLVATLEPLPGIPPTKSH 225 Aquifex aeolicus VF5
NP_759357 149 YKGMGVKFRHAWQKRLSVWREQARSLRDMQvv--gyHQTYRYLYAWLGi----------eQVADLEPKPGLPPTMAH 213 Vibrio vulnificus CMCP6
NP_716200 160 YQKSLADFSSRWQAAIPRWEEQAKPLKGKKvi--ayHTSFRYLFNWLGi----------eQVADLEPKPGLAPTSGH 224 Shewanella oneidensis...
NP_800817 178 YQLNGMKFRAHWRKKLNEWEAKAKPLNGKQvv--gyHSTYRYLFDWLGm----------vQVADLEPKPGVSPTTSH 242 Vibrio parahaemolytic...
CAB50430  157 INEELEDFELKINSIVEAYSGVLSGKKAIIe-----LPSQQYALEWLGi----------eVVDSIKPEAEVPAKSVD 218 Pyrococcus abyssi
NP_142492 160 IRNNLRRFEDKINVVIESYSGILAGKKAIIe-----LPSQQYTLEWLGi----------eVVDSIKPEAEVPAKSVD 221 Pyrococcus horikoshii
NP_558684 153 GLPPDEGFMSRLKAINSTYCCKFNGKAVAL------TPAAQYILYWLGf----------rDVAVLIKDPEVPPTPDD 213 Pyrobaculum aerophilu...
AAB89271  156 FEENFKVFVERVEEAEKEAKRISEGESGRKyv--amVPGVCYIAKTYNlsvaavlisegaGSASAGELAEIRKKLES 230 Archaeoglobus fulgidu...
NP_147304 187 YIGNLRVALKKLEDLERLQGLLKGSEAVAD------HPAAQYPAHWLGa----------eVVLIIGGGEEWAPTVQE 247 Aeropyrum pernix
NP_897064 173 FKERATAAIAVFNDLGRWGAIQFETLSQPQrvivtdHKTYSHLADRYGvde-------iaMLDSYTTGGVLRPSSLR 242 Synechococcus sp. WH ...
Q9ZEC9    170 INNNLPIALKELNKLQDIKNNEFRTIKDIIl----lSDSSEYFFLNTNiktaklyresqkSLRYISKLEELIKGSNN 242 Rickettsia prowazekii

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