1E1Q,4XD7,5FL7,1MAB,3OAA,5IK2,2W6E,2JIZ,1COW,2R9V,1FX0,5DN6,2XND,1BMF,1OHH,2QE7,5T4O,2F43,1SKY,4B2Q,2XOK,3OFN,4B2Q,2HLD,3OEE,5LQX,6F5D


Conserved Protein Domain Family
F1-ATPase_alpha_CD

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cd01132: F1-ATPase_alpha_CD 
F1 ATP synthase alpha subunit, central domain
The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The mitochondrial extrinsic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic. Alpha and beta subunits form the globular catalytic moiety, a hexameric ring of alternating alpha and beta subunits. Gamma, delta and epsilon subunits form a stalk, connecting F1 to F0, the integral membrane proton-translocating domain.
Statistics
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PSSM-Id: 410876
Aligned: 92 rows
Threshold Bit Score: 396.544
Created: 6-Mar-2002
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 11 residues -Click on image for an interactive view with Cn3D
Feature 1:ATP binding site [chemical binding site]
Evidence:
  • Structure:1E1Q_A; bound to MgANP
  • Comment:contains Walker A and Walker B motifs
  • Citation:PMID 8065448

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                     
1E1Q_A     94 IVDVPVGEELLGRVVDALGNAIDGKGPIg-----sKARRRVGLKAPGIiPRISVREPMQTGIKAVDSLVPIGRGQRELII 168 cow
NP_869309  94 LLSVPAGDAVIGRVLDPLGNPLDGKGPVq-----tDITRPVEIIATGVaERKPVTEPLQTGIKAIDSMTPIGRGQRELII 168 Pirellula sp. 1
P45825     97 VLSVPVGEAFMGRVVNPLGQPIDGRGDIe-----aEARRALELQAPSVvQRQSVKEPLQTGIKAIDAMTPIGRGQRQLVI 171 Mycobacterium lepr...
EFS04321   89 FMEVALFDNMXGRIIDTTGKMLYDENGEq-----pTTSYPLFCVTPAImTIDSVTRPLNTGLAAIDSITPIGRGQRQLIL 163 Listeria seeligeri...
P47641     94 VMKTPVGDVMLGRIVNALGEAIDGRGDIk-----aTEYDQIEKIAPGVmKRKSVNQPLETGILTIDALFPIGKGQRELIV 168 Mycoplasma genital...
C0QW65     94 ILEVPVGDALLGRVVNPLGVPIDGHGEIt-----tDKRRVIEFPAPGIaDRQAVKQPLQTGIKAIDSMTPIGRGQRQLII 168 Brachyspira hyodys...
B2KEX0     94 VINVPVGDALLGRVVDPLGKPLDGKGPIk-----tNSSRPLEIVAPGViERQPVKQPLQTGLKAIDSLVPIGKGQRELII 168 Elusimicrobium min...
AAG23339  126 LLHIPVGAGVLGKVVNPLGHEVPVGLVTrsrrlldSTLGKVDTGAPNIvSRSPVNYNLLTGFKAVDTMIPIGRGQRELIC 205 Trypanosoma brucei...
A5IFJ9     96 VLSIPVGDKLLGRVIDPLGHPLDGGEIPp-----hEEQGLLDRLSPHIlHRDFVNRPLYTGNKMLDNLIPIGKGQRELLI 170 Legionella pneumop...
6F5D_A    102 LLHIPVGAGVLGKVVNPLGHEVPVGLVTrsrrlldSTLGKVDTGAPNIvSRSPVNYNLLTGFKAVDTMIPIGRGQRELIV 181 Trypanosoma brucei...
Feature 1      # #######                                                                      
1E1Q_A    169 GD-RQTGKTSIAIDTIINQKrfndgtdekkKLYCIYVAIGQKRSTVAQLVKRLTDadamkYTIVVSATASDAAPLQYLAP 247 cow
NP_869309 169 GD-RKTGKTAIAIDAILNQKg--------qGVKCFYIAIGQKDSAVASVVDVLERhgameYTTVIAAGASAPAPLQYVAP 239 Pirellula sp. 1
P45825    172 GD-RKTGKTAVCVDTILNQRqnwesgdpkrQVRCVYVAIGQKGTTIASVRRALEEggamdYTTIVAALASDSAGFKWLAP 250 Mycobacterium lepr...
EFS04321  164 GN-RQTGKTQIAVDTIINQHd--------qNVHCIYVAIGLKAAYIAEVIETLKRhgameYSTVVATPASDSLTAQYLTP 234 Listeria seeligeri...
P47641    169 GD-RQTGKTAIAIDTIINQKd--------kDVYCVYVAIGQKNSSVAQIVHQLEVndsmkYTTVVCATASDSDSMVYLSP 239 Mycoplasma genital...
C0QW65    169 GD-RGTGKTSIALDAIINQKg--------tGVICIYVAIGQKASTVAGVVDTLRQhgaleYTIVVAATAADSAPLQYIAP 239 Brachyspira hyodys...
B2KEX0    169 GD-RQTGKTAIAIDAILNQKnqp----adqRTLCVYVAIGQKQSTVAQVVQTLTEfgameYTVIVSASAADPASLLYIAP 243 Elusimicrobium min...
AAG23339  206 NGdRQTGKTSIAVSTIINQVrinqqilsknAVISIYVSIGQRCSNVARIHRLLQSygalrYTTVMAATAAEPAGLQYLAP 285 Trypanosoma brucei...
A5IFJ9    171 GD-NGLGKSALALDIVMNQKd--------kKVYCVYVLIGQKRSTVSSTIQLLKKanaldYTTVVVAQATALPGLLYLAP 241 Legionella pneumop...
6F5D_A    182 GD-RQTGKTSIAVSTIINQVrinqqilsknAVISIYVSIGQRCSNVARIHRLLQSygalrYTTVMAATAAEPAGLQYLAP 260 Trypanosoma brucei...
Feature 1                                                                                     
1E1Q_A    248 YSGCSMGEYFRDn-gKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMndafggGSLTALPV 326 cow
NP_869309 240 YAGTAMAEHFMFn-gGHALVVYDDLSKQATAYRQMSLLMRRPPGREAYPGDVFYCHSRLLERSSKLsdelggGSITSLPI 318 Pirellula sp. 1
P45825    251 YTGSAIAQHWMYd-gKHVLIVFDDLTKQAEAYRAISLLLRRPPGREAYPGDVFYLHSRLLERCAKLadhlggGSLTGLPI 329 Mycobacterium lepr...
EFS04321  235 YAGMAVAESLRDq-gKDVLIIFDDLTKHADAYRAISLLFNRPPGREAYPGDSFYIHSSLLERAVQMnqehggGSITALPM 313 Listeria seeligeri...
P47641    240 FTGITIAEYWLKk-gKDVLIVFDDLSKHAVAYRTLSLLLKRPPGREAFPGDVFYLHSRLLERACKLndenggGSITALPI 318 Mycoplasma genital...
C0QW65    240 YGGCAMAEYFMYeqkKDTLIIYDDLTKQANAYRQISLLLRRPPGREAFPGDVFYLHSRLLERAAKLsdelggGSLTALPI 319 Brachyspira hyodys...
B2KEX0    244 YAGSSIAEEFMWn-kRDVLIIYDDLSKHAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERACKLsdknggGSITALPI 322 Elusimicrobium min...
AAG23339  286 YAGVTMGEYFMNr-gRHCLCVYDDLSKQAVAYRQISLLLRRPPGREAYPGDVFYLHSRLLERAAMLspgkggGSVTALPI 364 Trypanosoma brucei...
A5IFJ9    242 FAGCAIAEHWMKk-gLDTLVVYDDLSAHANSYRELSLLLRRPPGREAFPADIFYLHSRLLERSTCLspamggGSMTALPI 320 Legionella pneumop...
6F5D_A    261 YAGVTMGEYFMNr-gRHCLCVYDDLSKQAVAYRQISLLLRRPPGREAYPGDVFYLHSRLLERAAMLspgkggGSVTALPI 339 Trypanosoma brucei...
Feature 1                                   #    ##            
1E1Q_A    327 IETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVG 375 cow
NP_869309 319 IETLEGEVSAYIPTNVISITDGQIYVQPDLFFSGVRPAMNPGISVSRVG 367 Pirellula sp. 1
P45825    330 IETKANDISAYIPTNVISITDGQCFLETDLFNQGVRPAINVGVSVSRVG 378 Mycobacterium leprae TN
EFS04321  314 IETLSDDVTAYIPTNVISITDGQLFLKSDLFNRGQKPAVDVGVSVSRIG 362 Listeria seeligeri FSL S4-171
P47641    319 IETQAGDISAYIPTNVISITDGQLFMVSSLFNAGQRPAIQIGLSVSRVG 367 Mycoplasma genitalium G37
C0QW65    320 IETQDNEVSAYIPTNVISITDGQIYLLTSLFMSGVRPAIDVGISVSRVG 368 Brachyspira hyodysenteriae WA1
B2KEX0    323 IETQANDMSAYIPTNVISITDGQIYLESGLFHSGMKPAVNVGLSVSRVG 371 Elusimicrobium minutum
AAG23339  365 VETLSNDVTAYIVTNVISITDGQIYLDTKLFTGGQRPAVNIGLSVSRVG 413 Trypanosoma brucei brucei
A5IFJ9    321 IETKEGEMATYIPTNLISITDGQIFFDESLFSSGFLPAIDITKSVSRVG 369 Legionella pneumophila str. Corby
6F5D_A    340 VETLSNDVTAYIVTNVISITDGQIYLDTKLFTGGQRPAVNIGLSVSRVG 388 Trypanosoma brucei brucei

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