5LKM


Conserved Protein Domain Family
RadA_SMS_N

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cd01121: RadA_SMS_N 
Click on image for an interactive view with Cn3D
bacterial RadA DNA repair protein
Sms or bacterial RadA is a DNA repair protein that plays a role in recombination and recombinational repair of DNA damaged by UV radiation, X-rays, and chemical agent and is responsible for the stabilization or processing of branched DNA molecules.
Statistics
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PSSM-Id: 410866
Aligned: 56 rows
Threshold Bit Score: 377.642
Created: 13-Aug-2003
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
ATP bindingoligomer
Conserved site includes 13 residues -Click on image for an interactive view with Cn3D
Feature 1:ATP binding site [chemical binding site]
Evidence:
  • Structure: 5LKM; Streptococcus pneumoniae RadA with bound dTDP, contacts at 4A
    View structure with Cn3D
  • Comment:contains Walker A and Walker B motifs

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                     
5LKM_A      8 FVCQNCGYNSPKYLGRCPNCGSWSSFVEevevaevknarv------sltgektkpmklAEVTSINVNRTKTEmeEFNRVL 81  Streptococcus pneu...
P24554      9 FVCNECGADYPRWQGQCSACHAWNTITEvrlaaspmvarnerlsgyagsagvakvqklSDISLEELPRFSTGfkEFDRVL 88  Escherichia coli K-12
ABZ77667    8 YVCNECGQDFPRWQGQCSACQEWNTISElkisasrparssvs---gyagsvgggskklKEIEEFEAQKMLTGigELDRVL 84  Shewanella halifax...
EFV62752   23 YQCTECGGTSPKWQGKCPHCGEWNTLQEslaapepknarfq-----swaadtstvqslSAVTATEVPRNPTGmgELDRVL 97  Neisseria meningit...
NP_294829  64 YICNSCGYQSAKPLGRCPNCQAWNSFEEevptastsgksgrgglggyggvkggkltplSTVGRREEPRTPSGipELDRVL 143 Deinococcus radiod...
Q92HG1      6 YICSNCGNISPKWSGQCFDCGVWGSIVEeiistnqviv----------kvgskqdfdkLSGHVTEQLRIPTPigEFNRVL 75  Rickettsia conorii...
Q2YMH5      8 FICQNCGAVHSRWAGKCDSCGEWNTLIEegtnsgigsgpaam---lskrkgravaltsLSGEIEDAPRIVSGisELDRVT 84  Brucella
YP_143807   6 YACVECGYRTPKPLGRCPSCGSWESFQEvapapasrra----------kpsplpllalSQVDEAEERRFSSGlsEVDRVL 75  Thermus thermophilus
P96963      8 YGCTECGATFPKWAGQCADCGAWNTLVEtvveaapsgsgrg-----gwagqqanlktlAEVSVEEMPRFTTGstELDRVL 82  Pseudomonas aerugi...
NP_420470   8 YACQSCGAVQTKWSGQCSACQSWNTLVEevsakppgalsat-----katrvrglqftgLESETAPPPRILTGvdEFDRVC 82  Caulobacter vibrio...
Feature 1                    #######                     #        #  #                        
5LKM_A     82 GGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSQv-gTVLYVSGEESAQQIKLRAERLGDId--sEFYLYAETNMQSVRAE 158 Streptococcus pneu...
P24554     89 GGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQq-mKTLYVTGEESLQQVAMRAHRLGLPt--dNLNMLSETSIEQICLI 165 Escherichia coli K-12
ABZ77667   85 CGGLTTGSVNIISGDPGAGKTTILSDLVSRMSQl-mPSLYCTAEESLSQFKNRVNRLKLDcnedNLYLMAETSVEAIIAE 163 Shewanella halifax...
EFV62752   98 GGGLVDGAVILLGGDPGIGKSTLLLQTIAKMAQs-rKVLYVSGEESAQQVALRAQRLELPt--dGVNLLAEIRMEAIQAA 174 Neisseria meningit...
NP_294829 144 GGGLVAGGVTLIGGEPGIGKSTLLLQVADKVASrggTVLYVAGEESLEQIRLRADRLGVAa---DLQMTRDTRAEHIAAL 220 Deinococcus radiod...
Q92HG1     76 GGGLVLGSAILIGGDPGIGKSTLLLQLAASNFAskmNCLYITGEESLDQIKLRAIRLNLTn--yNTDILAATNLENIIAS 153 Rickettsia conorii...
Q2YMH5     85 GGGFVRGSALLIGGDPGIGKSTLLTQAAAALSNrghRIVYVSGEEAVAQIRLRAQRLGVAa--sAVELAAETNVEDIIAT 162 Brucella
YP_143807  76 GGGFVTGEVVLLGGEPGVGKSTLLLEMAKRMPQ---RVYYVAGEESPAQIKLRAQRLGVK----DLLLVRETRLEPLLAL 148 Thermus thermophilus
P96963     83 GGGLVDGSVVLIGGDPGIGKSTILLQTLCNLASr-vPALYVTGEESQQQVAMRARRLSLPe--dKLKVMTETSIETIIAT 159 Pseudomonas aerugi...
NP_420470  83 GGGVVPGSALLIGGDPGVGKSTLLLQVCASAAArgvSCAYISGEEAVEQIRGRADRMGLAk--aNVSLAAETALRDILDG 160 Caulobacter vibrio...
Feature 1                                                                #                    
5LKM_A    159 VERi-----qPDFLIIDSIQTIMSPEisGVQGSVSQVREVTAELMQLAKTNniAIFIVGHVTKEGTLAGPRMLEHMVDTV 233 Streptococcus pneu...
P24554    166 AEEe-----qPKLMVIDSIQVMHMADvqSSPGSVAQVRETAAYLTRFAKTRgvAIVMVGHVTKDGSLAGPKVLEHCIDCS 240 Escherichia coli K-12
ABZ77667  164 LEEk-----kIKFAVIDSIQAVVTDLanGSPGSPSQVKSSAQALTQYCKQNnvTMFLVAHVNKNNETAGPQTLIHIVDCL 238 Shewanella halifax...
EFV62752  175 LKQh-----qPEVVVIDSIQTMYSDQitSAPGSVSQVRECAAQLTRMAKQMgiAMILVGHVTKDGAIAGPRVLEHMVDTV 249 Neisseria meningit...
NP_294829 221 LEEh-----kPALCIVDSIQTVTVEGe-GAPGGVAQVRDGTAMLTRAAKETgtATVLVGHVTKDGTVAGPKVMEHIVDTT 294 Deinococcus radiod...
Q92HG1    154 IEAnk---nnIDLIVIDSIQTITTKElsSPPGTVSQIRTCANELVNYAKQNniIILLSCHVTKDGQLAGPKILEHLVDTV 230 Rickettsia conorii...
Q2YMH5    163 ISSdnsgskrPDLVIIDSIQTLWTDMadSAPGTVTQVRSSAQAMIRYAKQTgaAVVLVGHVTKDGQIAGPRVVEHMVDGV 242 Brucella
YP_143807 149 LEEd------PPEVLFVDSVQTLEAG--GSPGSLVAVREATSALVRFAKERgvAVVLVGHVTKEGVVAGPKSVEHAVDAT 220 Thermus thermophilus
P96963    160 ARQe-----qPRVMVIDSIQTIFTEQlqSAPGGVAQVRESAAMLVRYAKQSgtAIFLVGHVTKEGALAGPRVLEHMVDTV 234 Pseudomonas aerugi...
NP_420470 161 LKRd-----nFDLVVIDSIQTMWSDAheAGPGTVTQVRACATELVRLAKKKgvAILLVGHVTKDGQIAGPRVVEHLVDAV 235 Caulobacter vibrio...
Feature 1                                      ##     
5LKM_A    234 LYFEGERhhtFRILRAVKNRFGSTNEIGIFEMQSGGLVEV 273 Streptococcus pneumoniae
P24554    241 VLLDGDAdsrFRTLRSHKNRFGAVNELGVFAMTEQGLREV 280 Escherichia coli K-12
ABZ77667  239 THIECNDg-qIRTLRANKNRFGDVDTVGIFKMTERGMISV 277 Shewanella halifaxensis HAW-EB4
EFV62752  250 LYFEGDQhsnYRMIRAIKNRFGAANELGVFAMTENGLKGV 289 Neisseria meningitidis H44/76
NP_294829 295 VFLETVGa--FRLLRSVKNRFGQAGELGVFEMRGEGLIAV 332 Deinococcus radiodurans R1
Q92HG1    231 LYFEGDHnnhFRILRSYKNRFGGVGEIGVFEMSGSGLIEV 270 Rickettsia conorii str. Malish 7
Q2YMH5    243 LYFEGEGghhYRILRTVKNRFGPTDEIGVFEMSDGGLREV 282 Brucella
YP_143807 221 LYLETAGp--YRVLRSAKNRFGPVGEIGVFRMEEAGLLEV 258 Thermus thermophilus
P96963    235 LYFEGESdgrLRLLRAVKNRFGAVNELGVFGMTDKGLKEV 274 Pseudomonas aeruginosa PAO1
NP_420470 236 LSFEGERgypFRILRGAKNRFGATDEIGVFEMGDVGLREV 275 Caulobacter vibrioides

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