1O7C,1UUH


Conserved Protein Domain Family
Link_Domain

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cd01102: Link_Domain 
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The link domain is a hyaluronan (HA)-binding domain. It functions to mediate adhesive interactions during inflammatory leukocyte homing and tumor metastasis. It is found in the CD44 receptor and in human TSG-6. TSG-6 is the protein product of the tumor necrosis factor-stimulated gene-6. TSG-6 has a strong anti-inflammatory effect in models of acute inflammation and autoimmune arthritis and plays an essential role in female fertility. This group also contains the link domains of the chondroitin sulfate proteoglycan core proteins (CSPG) including aggrecan, versican, neurocan, and brevican and the link domains of the vertebrate HAPLN (HA and proteoglycan binding link) protein family. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggregates in which other CSPGs substitute for aggregan might contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN gene family are physically linked adjacent to CSPG genes. TSG-6 contains a single link module which supports high affinity binding with HA. The functional HA-binding domain of CD44 is an extended domain comprised of a link module flanked with N-and C- extensions. These extensions are essential for folding and functional activity. CSPGs are characterized by an N-terminal globular domain (G1 domain) containing two contiguous link modules (modules 1 and 2). Both link modules of the G1 domain of the CSPG aggrecan are involved in interaction with HA. Aggrecan in addition contains a second globular domain (G2) which contains link modules 3 and 4 which lack HA-binding activity. HAPLNs contain two contiguous link modules.
Statistics
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PSSM-Id: 238534
Aligned: 8 rows
Threshold Bit Score: 95.1786
Created: 12-Dec-2003
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
putative
Conserved site includes 2 residues -Click on image for an interactive view with Cn3D
Feature 1:putative hyaluronan binding site [chemical binding site]
Evidence:
  • Comment:HA-binding residues were identified in TSG-6 and CD44 by site-directed mutagenesis.
  • Comment:These two HA-binding residues are found at equivalent sequence positions in TSG-6 and CD44 . None of the other HA-binding residues identified were found at equivalent sequence positions in the two proteins.
  • Citation:PMID 9417085

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                   ##                                                                 
1O7C_T       1 XVYHRear---sgKYKLTYAEAKAVCEFEgGHLATYKQLEAARKi-GFHVCAAGWMakGRVGYPIv--KPGPNCGFGK-- 72   human
1UUH_B      13 GVFHVek----ngRYSISRTEAADLCKAFnSTLPTXAQXEKALSi-GFETCRYGFIe-GHVVIPRi--HPNSICAANN-- 82   human
P16112     254 EVFYAt------sPEKFTFQEAANECRRLgARLATTGHVYLAWQa-GMDMCSAGWLadRSVRYPIs--KARPNCGGNL-- 322  human
BAA25453   178 KLFVLesq---ngSQGLQLEAARLSCKSRgAHLASADELRRVVQdcSFAVCTTGWLadGTLGTTVcskGSGEQQIMRA-- 252  human
Q9GZV7     148 VVFPYqps---rgRYQFNYYEAKQACEEQdGRLATYSQLYQAWTe-GLDWCNAGWLleGSVRYPVl--TARAPCGGRGr- 220  human
NP_075378  274 RVFFLk------pLRPVPFSGAARACAARgAAVAKVGQLFAAWKlqLLDRCTAGWLadGSARYPIv--NPRARCGGRR-- 343  human
XP_780954 1724 VVVHIgsnayfdgSSNVTFGDAQTRCYQYgAELATPGDLLDLYDt-GDESCDWGWAsdGSVRRVVq--TSTECSASANs- 1799 purple urchin
NP_004377  160 VVFHYrsa---rdRYALTFAEAQEACRLSsAIIAAPRHLQAAFEd-GFDNCDAGWLsdRTVRYPIt--QSRPGCYGDRss 233  human
Feature 1                                  
1O7C_T      73 -TGIIDYgirl------nrsERWDAYCY 93   human
1UUH_B      83 -TGVYILts---------ntSQYDTYCF 100  human
P16112     323 -LGVRTVyvhanqtgypdpsSRYDAICY 349  human
BAA25453   253 -VDVRIEsnp-------vpgGTYSALCI 272  human
Q9GZV7     221 -PGIRSYgprd------rmrDRYDAFCF 241  human
NP_075378  344 -PGVRSLgfpd------atrRLFGVYCY 364  human
XP_780954 1800 -SGVMDKgap-------aqsGEWGVYCI 1819 purple urchin
NP_004377  234 lPGVRSYgrr-------npqELYDVYCF 254  human

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