3N98,1K1Y,2B5D


Conserved Protein Domain Family
GH57N_like

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cd01022: GH57N_like 
Click on image for an interactive view with Cn3D
N-terminal catalytic domain of heat stable retaining glycoside hydrolase family 57
Glycoside hydrolase family 57(GH57) is a chiefly prokaryotic family with the majority of thermostable enzymes coming from extremophiles (many of these are archaeal hyperthermophiles), which exhibit the enzyme specificities of alpha-amylase (EC 3.2.1.1), 4-alpha-glucanotransferase (EC 2.4.1.25), amylopullulanase (EC 3.2.1.1/41), and alpha-galactosidase (EC 3.2.1.22). This family also includes many hypothetical proteins with uncharacterized activity and specificity. GH57s cleave alpha-glycosidic bonds by employing a retaining mechanism, which involves a glycosyl-enzyme intermediate, allowing transglycosylation.
Statistics
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PSSM-Id: 212096
Aligned: 12 rows
Threshold Bit Score: 239.644
Created: 13-Aug-2003
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
active sitecatalytic site
Conserved site includes 6 residues -Click on image for an interactive view with Cn3D
Feature 1:active site [active site]
Evidence:
  • Structure:3N98; Thermococcus kodakaraensis branching-enzyme TK1436 binds two glucose and two glycerol molecules in the substrate binding site, contacts at 4A.
  • Structure:1K1Y; Thermococcus litoralis 4-alpha-glucanotransferase binds an inhibitor, acarbose, contacts at 4A.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1             # #                                                                         
3N98_A          6 TFVLHTHipyvrkh-----------------gkwpfgEEWVFEAISETYIPLLMEFERlrds------gvkfGIVINVTP 62   Thermococcus ...
1K1Y_A          7 IFGIHNHqpl------------------------gnfGWVFEEAYNRSYRPFMEILEEfp----------emKVNVHFSG 52   Thermococcus ...
YP_003525700   47 AIALHMQqplipaggedlssaaiisnlkymmdhqdigDNHNAPVFHWCYKRIGEFVPKlvde------gknpRVMLDYSG 120  Nitrosococcus...
Q8ZT36         22 IFIFHNHqpwyldf-----------------sknelaLPWVRMHAVGNYLKVPLLINQsg-----------vSVAFTLSG 73   Pyrobaculum a...
YP_383416       6 YTIFHLNlafs-----------------------sieEELRPEVVRRCYWPLLRLARDln-----------lPFGIEITG 51   Geobacter met...
2492899         4 TFNFEVHqphrlnkeinqng----ntlwekyvdtklnKEVFNKVANKCYIPTNELILElide-------ydfKVNYSITG 72   Methanocaldoc...
CAJ73817        4 YICIHGHfyqpprenpwle-------dvelqdsaypyHDWNERITAECYAPNAASSILdvdgrivdivniysKISFNFGP 76   Candidatus Ku...
EFM09892       97 NGNPMPHdd--------------------------lvSYYSHHAKVGAYLTWPWSVATtlkqn-----ypqaQMQVTMSG 145  Paenibacillus...
2B5D_X          6 LIFLHAHlpyvhhp----------------eydhfleERWLFEAITETYIPLLMMFDEie----------dfRLTMSITP 59   Thermotoga ma...
YP_001431613   19 ALILTGHmpylraa-----------------grrpdgEDPLHEMIACSIIPTLNVLYDlrer------gmrpYVSLAYSP 75   Roseiflexus c...
ZP_07685789     4 SFLIIAHapylrra-----------------grqphgEEPLHEMIAQGLIPLLDLLSDfqrs------glkpPVALACSP 60   Oscillochlori...
YP_004584986   34 CLVLHSHlpwvaha-----------------gawpvgEEWLYQAWTGAYLPLLDLLERladt------gqrnVLTLGVTP 90   Frankia symbi...
Feature 1                                                                                         
3N98_A         63 VLAEQLTDeymkkafeeymerklkameedlksgk---------------------------------------------- 96   Thermococcus ...
1K1Y_A         53 PLLEWIEEnk---------------------------------------------------------------------- 62   Thermococcus ...
YP_003525700  121 CLLHGLRDmg---------------------------------------------------------------------- 130  Nitrosococcus...
Q8ZT36         74 SLIEQLNWysngtytdarfrisekiargepltieekyamlavpggffdinwqnilnkhpryavllgvrndafnkcppgnm 153  Pyrobaculum a...
YP_383416      52 YTLETVAAid---------------------------------------------------------------------- 61   Geobacter met...
2492899        73 VFVEQALEfn---------------------------------------------------------------------- 82   Methanocaldoc...
CAJ73817       77 TLLSWMEKhkpg-------------------------------------------------------------------- 88   Candidatus Ku...
EFM09892      146 SAVTNVNDlvshggi----------------------------------------------------------------- 160  Paenibacillus...
2B5D_X         60 PLMEMLSSrdlqekyerhmeklielankevertkke-------------------------------------------- 95   Thermotoga ma...
YP_001431613   76 VLLEQLADivvqkhfviwmerwlarceaalrrwqrqr------------------------------------------- 112  Roseiflexus c...
ZP_07685789    61 LLIEQLADpvvqkhfilwmeerlerrteelhrferen------------------------------------------- 97   Oscillochlori...
YP_004584986   91 VLAAMLDDpyclsglarwvadwqlraqgalvdg----------------------------------------------- 123  Frankia symbi...
Feature 1                                                                                         
3N98_A         97 ------------------------------------ydekavsymlnyfrkvydywkaingDIIGKLRELQDq------- 133  Thermococcus ...
1K1Y_A         63 ------------------------------------------------------------pDYLDLLRSLIKr------- 75   Thermococcus ...
YP_003525700  131 -----------------------------------------------------------ldDVFDALKRVTCdph---yr 148  Nitrosococcus...
Q8ZT36        154 tcvvsrfsdqdfidlatlfnllwidpyiarqnpeiwalrnktnytredlkkvlqihlelikQVLPVYKKLAEq------- 226  Pyrobaculum a...
YP_383416      62 ------------------------------------------------------------pAWVEELRELCSg------- 74   Geobacter met...
2492899        83 ------------------------------------------------------------dYVLDLFKDLVKt------- 95   Methanocaldoc...
CAJ73817       89 ----------------------------------------------------------vyqAILEADKLSREhf-----s 105  Candidatus Ku...
EFM09892      161 -------------------------------------------------------aaysntNWAAPWKTAYDtlkttlgn 185  Paenibacillus...
2B5D_X         96 ----------------------------------hplkhkmakfyrehfekilnvfrsydgNILEGFKKYQEt------- 134  Thermotoga ma...
YP_001431613  113 ---------------------------------qrhqaylarfyldwgqgilhsfttrygrNLVAALRELCAt------- 152  Roseiflexus c...
ZP_07685789    98 ---------------------------------dahssylarfylewsrqklqsftsrynrNLVQRLRDLVSa------- 137  Oscillochlori...
YP_004584986  124 -------------------------------------vpgaghegalataalravesrwrhGASPLLRRLADa------- 159  Frankia symbi...
Feature 1                                                                  #                      
3N98_A        134 gYVEVITSAATHGYLPLl----gRDEAIRAQIANGVATYEKHfg----mKPKGIWLPECAYrpagewelpggrkvkrqGI 205  Thermococcus ...
1K1Y_A         76 gQLEIVVAGFYEPVLAAi-----PKEDRLVQIEMLKDYARKLg-----yDAKGVWLTERVWq---------------pEL 130  Thermococcus ...
YP_003525700  149 hCVEWLGCTWSHAVAPSt-----PVQDYRLHVQAWRHHFAAIfglealsRVKGFSPAEMALpnhp---------dvcyEF 214  Nitrosococcus...
Q8ZT36        227 gRIELVPVPYSHPLMPLlad-mgAIYDLKLHVNLSNSLFKRYlg----vTPTGVWPPEQAVn---------------dEV 286  Pyrobaculum a...
YP_383416      75 -QCELVGSGYSQMIGPLv-----PAEVNRQNLRIGNQTYERLlg----lRPRIVLVNEQAYs---------------aGL 129  Geobacter met...
2492899        96 gNVELIAETYHHSLTSLf----eTEDEFIEDIEMHRKMYKEIfg----fKAKVFRNTELIYn---------------nRI 152  Methanocaldoc...
CAJ73817      106 gHGSALAQIYNHMIMPLa-----NKRDKYTQVIWGLRDFQSRfg----rDAEGMWLPETAVn---------------tKT 161  Candidatus Ku...
EFM09892      186 rTMDLIHFSGHHSMGPLvgndymLKDLIYQNVVFAQPNFLGNsf----qSSKGYFPTELGFs---------------eRI 246  Paenibacillus...
2B5D_X        135 gKLEIVTCNATHAFLPLyq---mYPEVVNAQITVGVKNYEKHmk----kHPRGIWLAECGYy---------------qGL 192  Thermotoga ma...
YP_001431613  153 gTVEPLGGAATHAYLPLl----sRQESVRAQLDIGTLTVTRLlg----rRPRGVWLPECGFr---------------pGL 209  Roseiflexus c...
ZP_07685789   138 qMVEPLTMPATHAYLPLl----gREESVRAQIEQGLLHTARTi-----gRPEGIWLPGGAWr---------------pGV 193  Oscillochlori...
YP_004584986  160 -GVVELLGGPASHPVLPl----lDERIVPVQLGAGLDDATLRlg----tRPRGIWAPECAYr---------------pGL 215  Frankia symbi...
Feature 1                                                                                         
3N98_A        206 EKFLEEFGLRYFFVEsrlidegpasnvygevliadtektTLRPYWIKg------sNVAVFARn----RETGHQVWsahyg 275  Thermococcus ...
1K1Y_A        131 VKSLREAGIEYVVVDdyhfmsa-----------glskeeLFWPYYTEdg----geVITVFPId----EKLRYLIPfr--- 188  Thermococcus ...
YP_003525700  215 VKTLKDNGYQWVLVQehsveqpe---------dgrhpqrPHIPHRLVaknskgetASIIAIIk---tQGSDTKLVaqm-- 280  Nitrosococcus...
Q8ZT36        287 LRLFANAGYIWTVTDedvlka------------tapgasHFKLYFVQyg----drKLYVFFRd----KTLSDNIGfryss 346  Pyrobaculum a...
YP_383416     130 IGHYREAGFEAMVMEwdn-------------------paYHHPQWDPaw----ryLPQIAMGq---hGEELPVIWnnsif 183  Geobacter met...
2492899       153 AKIAKDLGFKAIFTEgiek-----------------ilgWRSPNYLYqs----pdGMKILLRn----YRLSDDIGfrfsa 207  Methanocaldoc...
CAJ73817      162 LEVLVELGIKFTILAprqaqkmkrmeshawkdmgngeidPTTPYLCRlps---grSICIFFYd----GPISQDLAfggl- 233  Candidatus Ku...
EFM09892      247 IPVLEKMGIQWSVIGnnhfsrtlkdy--pylndpgvdtmVSPPNRADlqnv-stvGSWISQPmfneaQVVRNKFPfastp 323  Paenibacillus...
2B5D_X        193 DLYLAQNNVEYFFVDshafwfa----------deqprygVYRPIMTPs-------GVFAFARd----PESSEQVWsaavg 251  Thermotoga ma...
YP_001431613  210 EQVLRLNGTRYFIIDpasvav-------------dacvtHLRPRWVMp------rRLIALLRa----VDASLQIVspaig 266  Roseiflexus c...
ZP_07685789   194 EQVISDVGIRYLVVDpsclp---------------seteCRPINLPKy-------RLAAIAPd----EGLAQHIWtpelg 247  Oscillochlori...
YP_004584986  216 ERHYAAAGVTHFVVDgptvg---------------getaGAYDVAGS--------GVLAFPRd----LGVSYEVWsptag 268  Frankia symbi...
Feature 1                                                                                         
3N98_A        276 ypgdfwyrefhkkapksggqywr-------------------itskevglgekefydpdkamerveehaRHFVSLVERLl 336  Thermococcus ...
1K1Y_A        189 -------------------------------------------------------------------pvKKTIEYLESLt 201  Thermococcus ...
YP_003525700  281 -------------------------------------------------------------------qpYYEAQGLSRQe 293  Nitrosococcus...
Q8ZT36        347 l--------------------------------------------------------------speaalADFVNYLKRVp 364  Pyrobaculum a...
YP_383416     184 fqkfq-------------------------------------------------------ryvhgelelDDYLALIGRHd 208  Geobacter met...
2492899       208 rdw-----------------------------------------------------------dqypltaDKYAIWLASTp 228  Methanocaldoc...
CAJ73817      234 -----------------------------------------------------------------lengENFATRLLSAf 248  Candidatus Ku...
EFM09892      324 hwvkyvnpttgt-----------------------------------------eskivgvpvaqaesweEGYQGSVTAKd 362  Paenibacillus...
2B5D_X        252 ypgdpryrefyrdigfdremeyikdyidpsgvrintgikyhritsksldasqkeyydidlameaveehaRDFLHKKESQa 331  Thermotoga ma...
YP_001431613  267 yvgdplylaprrdrsthlsiwr--------------------ngdsdtviepydpyhafrraqehaihfAEWAAAELRAf 326  Roseiflexus c...
ZP_07685789   248 yvgdplyrspdepggyaaiglrsp-----------------qpydpyhalrraqehathfvslllaeheRRSSDDLALVl 310  Oscillochlori...
YP_004584986  269 yprgawyrdfhtfdhgsglrvsr-------------------vtsvdtppgrkapyepaaarraaaddaARFVGVLRRRl 329  Frankia symbi...
Feature 1                           #                                                             
3N98_A        337 reheek-fgekgiIVAPYDTELFghww----------fegvKWLGRVLELLYQrgv----etpTLSRFLEEysgek---- 397  Thermococcus ...
1K1Y_A        202 sdd------pskvAVFHDDGEKFgvwpgty-----ewvyekGWLREFFDAITSneki---nlmTYSEYLSKftpr----- 262  Thermococcus ...
YP_003525700  294 lkgq----sipplVTQIGDGENGgvmm----------nefpGKFMEVMGEATGsht----ppvNVSEYLEYletlglkea 355  Nitrosococcus...
Q8ZT36        365 rek-------csvVVIALDGENPwenyp---------nfgdDFLRVFFQGLAQlekngtvkiwKPSDFIKAcgneaaelp 428  Pyrobaculum a...
YP_383416     209 ngt------traiPLYGNDIEIFdfrpgrftteavmehdewGRIRELFERLLEegrf---tfiPPSRLLSLlhepgagnr 279  Geobacter met...
2492899       229 g----------evINIYMDYETFgehhwk-------etgifEFLRYLPIEIAKhehl---evvNVSEVVDRleprge--- 285  Methanocaldoc...
CAJ73817      249 tenr----dwpqlVHIATDGETYghhh----------fkgdMALAYCLYHIESknla---kitNYGEYLEKhppkf---- 307  Candidatus Ku...
EFM09892      363 ikpfegissqkqfFVIAHDGDNAsgra-----------gseETWRNAGNVTYAdsgv---kgmGIDEYLRTntpaa---- 424  Paenibacillus...
2B5D_X        332 rrlmdi-mgvepvIVAPFDAELFghww----------fegvFFLKRFFELVNEskdl---klvTASEVIDTleev----- 392  Thermotoga ma...
YP_001431613  327 anrh----drpgmLVVPLDAEVLgrrw----------fegvAWLRTLLETVLIhrpf---altTPSPYLRAfrpr----- 384  Roseiflexus c...
ZP_07685789   311 ld--------tamIGSTWFEGPTwlqa----------vlmlCATHPGLHLTTPsaylr-tqrtRQQADLQVgsw------ 365  Oscillochlori...
YP_004584986  330 telaaardgrralVVCAFDTELFghhw----------hegpAFLEAVLTLLPDagi----qaaTLSQAAAAghve----- 390  Frankia symbi...
Feature 1                                                       #                     #  
3N98_A        398 -------------------------------------heieLPEGSWgan-------------sdHSTWWN 418  Thermococcus kodakarensis
1K1Y_A        263 -------------------------------------glvyLPIASYf----------------eMSEWSL 280  Thermococcus litoralis
YP_003525700  356 dfpviqpvqqkkiwdnfkagggpekleelieelqhsdhqfhMEGGSWt----------------nNISWVQ 410  Nitrosococcus halophil...
Q8ZT36        429 qrefkyfdlhl-----------dlsfyksirdlptrlvngrIAEGSWsgg-------------gsLAVWIG 475  Pyrobaculum aerophilum
YP_383416     280 lsle------------------------speapipvkkqekYNITRWavt-------------grDDIGIN 313  Geobacter metallireduc...
2492899       286 ------------------------------------iyvheFATISWadt------------erdVSAWLG 308  Methanocaldococcus jan...
CAJ73817      308 -------------------------------------eaeiKENTSWsci-------------hgIERWKN 328  Candidatus Kuenenia st...
EFM09892      425 ------------------------------------ndvvhVQDGSWidtrdsssdpqwhhwklpFGIWKG 459  Paenibacillus curdlano...
2B5D_X        393 -------------------------------------qiatPADSSWgag-------------gyYETWLN 413  Thermotoga maritima MSB8
YP_001431613  385 -------------------------------------qsivLRDGSWgpg-------------gdHSAWNA 405  Roseiflexus castenholz...
ZP_07685789   366 ---------------------------------------aeAGDANWqag-------------atDEYWRA 384  Oscillochloris trichoi...
YP_004584986  391 -------------------------------------gardLPAGSWgrg-------------kdFHVWAD 411  Frankia symbiont of Da...

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