2IEE


Conserved Protein Domain Family
PBP2_YckB

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cd01003: PBP2_YckB 
Click on image for an interactive view with Cn3D
Substrate binding domain of an ABC cystine transporter; the type 2 periplasmic binding protein fold
Periplasmic cystine-binding domain (YckB) of an ATP-binding cassette (ABC) transporter from Bacillus subtilis and its related proteins. Cystine is an oxidized dimeric form of cysteine that is required for optimal bacterial growth. In Bacillus subtilis, three ABC transporters, TcyJKLMN (YtmJKLMN), TcyABC (YckKJI), and YxeMNO are involved in uptake of cystine. Likewise, three uptake systems were identified in Salmonella enterica serovar Typhimurium, while in Escherichia coli, two transport systems seem to be involved in cystine uptake. Moreover, L-cystine limitation was shown to prevent virulence of Neisseria gonorrhoeae; thus, its L-cystine solute receptor (Ngo0372) may be suited as target for an antimicrobial vaccine. The cystine receptor belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprises of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.
Statistics
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PSSM-Id: 270224
Aligned: 4 rows
Threshold Bit Score: 363.893
Created: 6-Mar-2002
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
ligand binding
Conserved site includes 10 residues -Click on image for an interactive view with Cn3D
Feature 1:ligand binding site [chemical binding site]
Evidence:
  • Comment:based on sequence similarity to Neisseria Gonorrhoeae L-cystine ABC transporter.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1               #  #                                        #                ##      #   
2IEE_A        21 GKIVVATSGTLYPTSYHDtdsgsDKLTGYEVEVVREAAKRLGLKVEFKEXgIDGXLTAVNSGQVDAAANDIdVTKDREEK 100 Bacillus subtilis
IGS:I33_0385  41 GKIVVATSGTLYPTSYHDtdsgsDKLTGYEVEVVREAAKRLGLKVEFKEMgIDGMLTAVNSGQVDAAANDIdVTKDREKK 120 Bacillus subtil...
EGA89479      46 GSLTVATSGTLLATSFRDae--sDELTGFEVEVVRELGERLNLDIEFKELgFDEMLTSVNTGQIDLAANDIeITEDRAEE 123 Planococcus don...
CCB93304      38 GSIKVATAGTLYPQTYHDd---kNNLTGYDVEILKEVGKRLKLKIDFTEMgVDGMLTAVNSGQVDIANYSLeDDNKNVKK 114 Streptococcus s...
Feature 1                                             #   ##                                   # 
2IEE_A       101 FAFSTPYKYSyGTAIVRKDdlsgIKTLKDLKGKKAAGAaTTVYXEVARKYGAKEVIYdnatNEQYLKDVANGRTDVILND 180 Bacillus subtilis
IGS:I33_0385 121 FAFSTPYKYSyGTAIVRKDdlsgIKTLKDLKGKKAAGAaTTVYMEVARKYGAKEVIYdnatNEQYLKDVANGRTDIILND 200 Bacillus subtil...
EGA89479     124 FIFSTPIKYSyGTAVVRKDdlsgISSLEDLPGKKAAGAsTSIYMEIAREYGAEEVTYdnasNEVYLRDVSIGRTDVILND 203 Planococcus don...
CCB93304     115 FLRSEPYKYSfTSMVVRESnnsgISSWNDLKGKKAAGAaSTKYMKIAKKMGAELVVYdnvtNDVYMQDLVNGRTDVIVND 194 Streptococcus s...
Feature 1                                                                                    
2IEE_A       181 YYLQTLALAafp-----dlNITIHPdiKYXPNKQALVXKKSnaALQKKXNEALKEXSKDGSLTKLSKQFFNkADVS 251 Bacillus subtilis
IGS:I33_0385 201 YYLQTIALAafp-----dlNITIHPdiKYMPNKQALVMKKSnaALQKKMNEALKEMSKDGSLTKLSKQFFNkADVS 271 Bacillus subtilis s...
EGA89479     204 FYLSTFGVAafp-----dlNITIHPdiKYAPSEVGLVMNKDnkELAENVNKTLEAMLEDGTITEISEEFFGgADVS 274 Planococcus donghae...
CCB93304     195 YYLQKMAVAaikdkypvkiNDGIYS--NPYSTSFTFSLKNK--TLQEKVNKAIKDMKKDGTLTKISEKFFAgQDVT 266 Streptococcus saliv...

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