1XT8,2VHA,2V25,2YJP


Conserved Protein Domain Family
PBP2_Cys_DEBP_like

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cd01000: PBP2_Cys_DEBP_like 
Click on image for an interactive view with Cn3D
Substrate-binding domain of cysteine- and aspartate/glutamate-binding proteins; the type 2 periplasmic-binding protein fold
This family comprises of the periplasmic-binding protein component of ABC transporters specific for cysteine and carboxylic amino acids, as well as their closely related proteins. The cysteine and aspartate-glutamate binding domains belong to the type 2 periplasmic binding protein fold superfamily (PBP2), whose many members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.
Statistics
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PSSM-Id: 270221
Aligned: 14 rows
Threshold Bit Score: 239.902
Created: 6-Mar-2002
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
ligand bindingdimer interface
Conserved site includes 10 residues -Click on image for an interactive view with Cn3D
Feature 1:ligand binding site [chemical binding site]
Evidence:
  • Structure:1XT8; Campylobacter jejuni cysteine-binding protein in complex with cysteine, contacts at 4 A.
  • Structure:2VHA; Shigella flexneri glutamate/aspartate-binding protein in complex with glutamate, contacts at 4 A.
  • Structure:2YJP; Neisseria Gonorrhoeae cysteine-binding protein in complex with cysteine, contacts at 4 A.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                   #  #                                                   #          
1XT8_A     37 LDKIKQNGVVRIGVFgDKPPFGYVDe-kGNNQGYDIALAKRIAKel----fGDENKVQFVLVe---AANRVEFLKSNKVD 108 Campylobacter jejuni
2V25_A      3 LESIKSKGQLIVGVKnDVPHYALLDqatGEIKGFEVDVAKLLAKsi----lGDDKKIKLVAVn---AKTRGPLLDNGSVD 75  Campylobacter jejuni
2YJP_A     48 VAAIKEKGVIRIGVFgDKPPFGYVDa-nGKNQGFDVEIAKDLAKdl----lGSPDKVEFVLTe---AANRVEYVRSGKVD 119 Neisseria gonorrho...
NP_104825  28 LRTVLDRGKLIVGTGsTNAPWHFENd-aGELVGMDITMGRILAKgl----fDDPTKVEFVMQd---PAQRIPNVTTNKVD 99  Mesorhizobium loti
NP_355987  25 LDDIISSGTLRCAVVlDFPPMGARDd-aNNPVGFDVDYCNDLAK-------VLGVTAEIVETp---FPERIPALMSGRVD 93  Agrobacterium tume...
NP_435287  35 VETIKSAGTVKVGMLvDFPPFGIMDa-nNQPDGYDADVAKLLAK-------ELGVEVTIVPVt---GPNRIPYLQSNQVD 103 Sinorhizobium meli...
NP_390621  39 LAAIKDNDKIVFGVKtDTRLFGLKNpssGEIEGFDIDIAKQIAKdi----lGDEKKAQFKEVt---SKTRIPMLQNGDID 111 Bacillus subtilis ...
CAP56654   65 LADIRASGHLNIGVNpALPPLAAYDs-rNVIEGFDVDVGTALAA-------RLGVSPRLVPVs---SSGRIPYLMAGKVD 133 Gluconacetobacter ...
CAX61222   25 LSDIKSRGVLTVGIKnDYPPYGFMNa-eGKTVGFEVDLARSIAA-------NLLGSPDKIKLvpvnASNRIQFLQSGQID 96  Erwinia billingiae...
Q8RQL6     36 LLAAIENGNVTIGTKyDQPGLGLRNp-dNSMSGLDVDVAQYVVNsiaddngWDHPTVEWRETp---SAQRETLIQNGEVD 111 Corynebacterium ef...
Feature 1         #      #                                                ##                  
1XT8_A    109 IILANftQTPQRAEqVDFCS-PYMKVALGVAVPkdsni----tsveDLKDKTLLLNk--GTTADAYFTQNyp----niKT 177 Campylobacter jejuni
2V25_A     76 AVIATftITPERKRiYNFSE-PYYQDAIGLLVLkekky----kslaDMKGANIGVAq--AATTKKAIGEAakkigidvKF 148 Campylobacter jejuni
2YJP_A    120 LILANftQTPERAEaVDFAD-PYMKVALGVVSPknkpi----tdmaQLKDQTLLVNk--GTTADAFFTKShp----evKL 188 Neisseria gonorrho...
NP_104825 100 ITIQFmtMTAQRSQlINFSR-PYYVEGVALLTLptaenktfdkllaGGSATRISILq--NVDAESSVHYAlp----qaQV 172 Mesorhizobium loti
NP_355987  94 VGVAStsDTLERAKtVGMTV-PYFAFEMAVTANdksgi----ksfeDMKGKTVGATa--GTFEAIALEKTvkew-gvgEF 165 Agrobacterium tume...
NP_435287 104 LLVASlgITEERAKnVDFSQ-PYAGISIGVFGAadlav----tkpeDLAGKTIGVAr--ASTQDTATTKIapq---daNI 173 Sinorhizobium meli...
NP_390621 112 AIVATmtITEERKKeVDFSD-VYFEAGQSLLVKkgski---ksvenLGKGSKVLAVk--GSTSSQNIREKap----eaSV 181 Bacillus subtilis ...
CAP56654  134 VVLGGltRTPERAAaIAFSA-PLYAEEFAIIAPavsrv----ggldDLASGRVRMVevrGSTAVPFLRTHap----kaPI 204 Gluconacetobacter ...
CAX61222   97 LIMATlgVTPERAKeIDFTVeYVSAAGPSVMARkeakf----nqweQLKGQKICGIq--GSYYNKTLTQKyg-----iQL 165 Erwinia billingiae...
Q8RQL6    112 MIAATysINPGRSEsVNFGG-PYLLTHQALLVRedddr---iqtleDLDDGLILCSv-tGSTPAQKVKDVlp----gvQL 182 Corynebacterium ef...
Feature 1                           ##                                 #                      
1XT8_A    178 LKYdQNTETFAALMDKRGDALSHDntLLFAWVKdh---pDFKMGike----lgnKDVIAPAVKKGDkELKEFIDNLIIKL 250 Campylobacter jejuni
2V25_A    149 SEFpDYPSIKAALDAKRVDAFSVDksILLGYVDd-----KSEILpds-----fePQSYGIVTKKDDpAFAKYVDDFVKEH 218 Campylobacter jejuni
2YJP_A    189 LKFdQNTETFDALKDGRGVALAHDnaLLWAWAKen---pNFEVAign----lgpAEFIAPAVQKGNaDLLNWVNGEIAAM 261 Neisseria gonorrho...
NP_104825 173 LQIdTQANVLQALESKRADAAAVDlsTVRWLASrn--pdKYFDAgks-----wySMLYGAALRQGDlDWLTFVNQTFTIA 245 Mesorhizobium loti
NP_355987 166 RPYqTQADVFLALSQGQIDATVSTstVAQSTVKsgkfagVSVVGkap-----ydIDYVSLFTNRDEyGFINYLNLFINQQ 240 Agrobacterium tume...
NP_435287 174 QRFdDDASAVQALLSGQVELIGVSnvVAAQIEAaa--pgRFNQKlq------lsQQVQGIAVRKGSsEMLKFVNGFLDKV 245 Sinorhizobium meli...
NP_390621 182 LEFeNYAEAFTALKSGQGDALTTDnaILYGMADen---kNYQLTgkp-----ftDEPYGIAVKKGQsALAKEINASLKKM 253 Bacillus subtilis ...
CAP56654  205 LLLgSYPDAVRALAQGRGDAMVDVieYVGRFLAaep-qaGWTIQrgf----apaAGEDCVGVAQSDtDLLRVVDGTLADL 279 Gluconacetobacter ...
CAX61222  166 VNFtALPEAYRALQDNRCVAMVFDdmTLQNKLGepg-wsDYKIAikp-----yeFLPMAGGLRKGDeAFKNAVNAAIVKT 239 Erwinia billingiae...
Q8RQL6    183 QEYdTYSSCVEALSQGNVDAMTTDatILFGYAQqr--egEFRVVemeqdgepftNEYYGIGITKDDtEATDAINAALERM 260 Corynebacterium ef...
Feature 1                   
1XT8_A    251 gqeQFFHKAYDETL 264 Campylobacter jejuni
2V25_A    219 k--NEIDALAKKWG 230 Campylobacter jejuni
2YJP_A    262 kkdGRLKAAYEKTL 275 Neisseria gonorrhoeae FA 1090
NP_104825 246 mfgHESALYDAAFK 259 Mesorhizobium loti
NP_355987 241 vrtGRYAELYKKWV 254 Agrobacterium tumefaciens str. C58 (Cereon)
NP_435287 246 kadGQLNAIHEKWL 259 Sinorhizobium meliloti 1021
NP_390621 254 ksdGRYDEIYKKWI 267 Bacillus subtilis subsp. subtilis str. 168
CAP56654  280 krdGTIQAAYRRWF 293 Gluconacetobacter diazotrophicus PAl 5
CAX61222  240 egeNKLVEWQSTYH 253 Erwinia billingiae Eb661
Q8RQL6    261 yadGSFQRFLTENL 274 Corynebacterium efficiens YS-314

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