1WDN,1GGG,4F3P


Conserved Protein Domain Family
PBP2_GlnH

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cd00994: PBP2_GlnH 
Click on image for an interactive view with Cn3D
Glutamine binding domain of ABC-type transporter; the type 2 periplasmic binding protein fold.
This periplasmic substrate-binding component serves as an initial receptor in the ABC transport of glutamine in bacteria and eukaryota. GlnH belongs to the type 2 periplasmic-binding fold protein (PBP2) superfamily, whose members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. PBP2 typically comprises of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.
Statistics
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PSSM-Id: 270216
Aligned: 23 rows
Threshold Bit Score: 330.006
Created: 6-Mar-2002
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
chemical
Conserved site includes 12 residues -Click on image for an interactive view with Cn3D
Feature 1:chemical substrate binding site [chemical binding site]
Evidence:
  • Structure:1WDN; Escherichia coli GlnBP complexed with glutamine; contacts at 4.0A
  • Citation:PMID 9571045

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1              #  #                                           #                ## #    # 
1WDN_A         4 KLVVATDTAFVPFEFKq--gDLYVGFDVDLWAAIAKEL--KLDYELKPm---dFSGIIPALQTKNVDLALAGITITDERk 76  Escherichia coli
NP_691925     49 SYTVVSDNSFVPFEFVe--dGELTGFDIELIKAIADEA--GFEIEGGEiqttnFDGIIPGLQTQQFDIAIAGISITEDRk 124 Oceanobacillus ...
CAJ54808      26 GLVVAHDTNLMPFEFKdk-eGNFVGFDIELWEHIAEIA--NIPYTFQPm---dFNGIIPGLQTGSIDIAISGMTITPERa 99  Lawsonia intrac...
ADU32367      25 NYTVATDTNYVPFEFLdtetGEMVGFDIDLINEVADRV--GFEIDLEVv---eFDGILTGMETGRYDIGIAGATITEDRa 99  Bacillus cellul...
ACS63664      34 PLRVATDATFAPMEFVe--nGKRTGFDVDLIEALARTM--GRPVEWTDi---dFKGLVPGLISRRFDVAISGIYITEERk 106 Ralstonia picke...
CCD01631      44 TFRVGVDATFAPFEFSq--dGKKTGFDIELVEAIAKELgaTKGVEWVDi---dFKGLIPGLMANRFDMIASAMYITEERr 118 Azospirillum br...
NP_880554     28 TIRAVTDATFPPMEFVk--dGKRTGFDIELVEALAQAM--GKKIEWIDi---dFKGLIPALQAGRADIAVSAIYITAERq 100 Bordetella pert...
YP_002546667  26 TIVVGTSVDSKPFDFMq--dGKYVGFDQDLLVEIAKEA--GFKYNVTPm---dFGALIPALQTANIDLAISSIFMTDARk 98  Agrobacterium r...
ADU69257      22 PIRVAIDPTFPPMEYIq--nNQRTGFDVDLAAALSKQM--GRPWVYTDm---dFKAMVPSVLAGRQDIVLSAIYITDDRk 94  Pantoea sp. At-9b
ADJ63785      31 VIRVGTDATFPPMEFVk--dGKRTGFDVELIEALAKTM--GKKVQWIDi---dFKGLIPGLVSNRFDIAASAIYMTDERr 103 Herbaspirillum ...
Feature 1                                               #  ##                                    
1WDN_A        77 kaIDFSDGYYKSGLLVMVKAnnn-dvKSVKDLDGKVVAVKSGTGSVDYAKaniktkDLRQFPniDNAYMELGTNRADAVL 155 Escherichia coli
NP_691925    125 qvIDYSEPYYESGLKIGVSAdne-diNSIEDLEGKTVATRMGSTSADFLEentedaTINQFEqlDQVYLAVENGSADAVV 203 Oceanobacillus ...
CAJ54808     100 kvILFSQPYYESGLMILVRAgee-siSKLEDLVGKTVGVKTGTSSVDFMKsfgkqrSLKLFPtnDGMFFDLMTGGVDAVV 178 Lawsonia intrac...
ADU32367     100 elFDFSDPYYDAGLILAVRAdee-eiQSIDDVDGKTVATRAATTSETYLMent-daDISLFPdiVNAYQDLVAGRVDAVI 177 Bacillus cellul...
ACS63664     107 kvVDFTVPYYHGGLVAMVKQgnt-aiKTPADLNGKKVSVQVGTKSVNYLKenypkvERVEVEknEQMFNLVEIGRADAAV 185 Ralstonia picke...
CCD01631     119 kvVAFSDTYYPGGLVIMVKAnnt-amKGPADLEGKTAAVQIGTKSVVHLKehfpktKIVEVEtnAEMFGQVETGRTDVAV 197 Azospirillum br...
NP_880554    101 kvVDFTDPYYAGGLVVLTKKdg--pvKSLKDLEGRKVSVQVGTKSVNYLKehfpkvQRVEVEknQEMFNLVQIGRADAAV 178 Bordetella pert...
YP_002546667  99 kvVDFSDVYYTSALGVLIVAnda-tiKSGNDLAGKKVASVTGAASTTWLKehaptaQVTLFPqvTNMFMELQSSRAEAVV 177 Agrobacterium r...
ADU69257      95 kvVDFTDPYFSAGLVVMVKKgdt-riKTPQDLAGKRVAVQVGTKSVKVLAdqfpsaQSVEVEknEEMFNSLEAGRADAVV 173 Pantoea sp. At-9b
ADJ63785     104 kvVNFSDPYYRGGLAVLVRRddnsikVPEDLNKGKRVSVQVGTKSVGYLKdnfpgvERVEVEknQAMFDLLATGRVNAVV 183 Herbaspirillum ...
Feature 1        ##                                                                  
1WDN_A       156 HDTPNILYFIKtagngQFKAVGDs-LEAQQYGIAFPKGSdELRDKVNGALKTLREnGTYNEIYKKWFG 222 Escherichia coli
NP_691925    204 YDAPNVDYYIStt-gdGLKTVGEl-YQAENYGIAIAKGNeDLVAAVDDALATLKEnGKYDEIYNKWFG 269 Oceanobacillus iheyensis HT...
CAJ54808     179 FDAPVLQYFASsagkgKVKLVGPk-YKGQPYGIAFRKNSeELVQKVNTALNELKRnGIYTELYKKWFG 245 Lawsonia intracellularis PH...
ADU32367     178 YDLPNVVYYIEsealgEMKTVGDv-LTGEQYGIMFPKDS-ELREEVNEALADIMGdGTYDEIYEKWFG 243 Bacillus cellulosilyticus D...
ACS63664     186 TGRPAAAYYVKar--pGLRLVEPa-LTSEEYGIAVRRDQpELTKALNAALDKIKAdGTYDQIVKKWFG 250 Ralstonia pickettii 12D
CCD01631     198 TGKPAAKLYAQth--pTVKVLDDq-LTTEDYGFAMRKDNtELVTKVNAAITKLKAdGTYQKLIDKWFE 262 Azospirillum brasilense Sp245
NP_880554    179 TGKPAAKLFAQst--qNLAVLSEq-ITTEEYGIAVPKSKsGLTRELNEALKKLKAdGTYERIVNKWFE 243 Bordetella pertussis Tohama I
YP_002546667 178 YDYPFLAYYAAtegkgKVKILEApvGDGIPVGIAFPKGS-DLVVKTNDALKKIKAdGRYDAIYKKWFG 244 Agrobacterium radiobacter K84
ADU69257     174 TGKPAALLYSKtr--gTTQILPEp-LTHEEYGIAVSKREpELRQQLNDALKAIKAdGTYDALQKKWFG 238 Pantoea sp. At-9b
ADJ63785     184 TGRPAAVEYARtq--pLVRVLDKg-LTTELYGFALRKSDtELTAQLNKALQTLRMnGTYTALTDKWFG 248 Herbaspirillum seropedicae ...

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