2Q6T,2VYE,4NMN,2R6A,4A1F,3BGW,3BH0,4ZC0


Conserved Protein Domain Family
DnaB_C

?
cd00984: DnaB_C 
Click on image for an interactive view with Cn3D
C-terminal domain of DnaB helicase
DnaB helicase C-terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Statistics
?
PSSM-Id: 410864
Aligned: 72 rows
Threshold Bit Score: 272.463
Created: 13-Aug-2003
Updated: 25-Oct-2021
Structure
?
Program:
Drawing:
Aligned Rows:
 
Conserved site includes 14 residues -Click on image for an interactive view with Cn3D
Feature 1:ATP binding site [chemical binding site]
Evidence:
  • Structure:4NMN; Aquifex aeolicus DnaB with bound ADP, contacts at 4A
    View structure with Cn3D
  • Comment:contains the Walker A and Walker B motifs

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1                                     #######                        #        #         #
2Q6T_A       182 GVRTGFKELDQLIg--tLGPGSLNIIAARPAMGKTAFALTIAQNAAlke--gvGVGIYSLEMPAAQLTLRMMCSEARidM 257 Thermus aquaticus
4NMN_A       175 GLPSGFTELDLKTt--gFHPGDLIILAARPGMGKTAFMLSIIYNLAkde--gkPSAVFSLEMSKEQLVMRLLSMMSEvpL 250 Aquifex aeolicu...
CBA30834     191 GIPTGFTDLDLITs--gLQVGSLVVVAGSTNSGKTAFALNIARYVAcde--glPVLIFTPNDSAVHTTNRILGVISKisA 266 Curvibacter put...
EHN68699      38 ALSTGYNDVDKKTg---GISKGLTVIAGRPLNHHAMFHRNIIENILldlnneeCILHFESDLNIDSFYRRVVSSISRvdY 114 Vibrio fischeri...
AAW62063     199 GLSWGYRSLDRLTn--gLVGGNMYVLGARPAMGKTSIGLGIALRVAsa---gkRCLFWSGEMTAEQVGARGGAAKSGlnL 273 Gluconobacter o...
ABY30272     183 GVSYGVPKLDAVTl--gMRPGQFIVLAGRPAMGKTLTALHIAIAAArs---ggAVGMFSLEMEADELSERVLSALAYdpR 257 Methylobacteriu...
NP_746023    177 GLSTGLPDLDDLIq--gLRGSHVIIVAGRPGTGKTTLGLGIAEYLTire--skSALVFSLEMAGKELAKRSLASASSvtT 252 Pseudomonas put...
EFX92606     176 LLFTGVQALDDKLq--gINETDICIIAGRAGNGKTETAITFTKNIIen---sgSVLFFSLEMSKEQIMDRLVASASGlnS 250 Actinobacillus ...
BAI36556     190 GMSTGIPSLDRMLspkgLVKGSLFVIGARPKMGKTTLYSQMAINCAvhe--kkPALMFSLEMPGDQILEKLVGQKSGvnP 267 Escherichia col...
YP_003614066 171 YLRTGIQPMDDAYg--gFDRTDLIIIAGRPGMGKTELAINIANSIGrq---kgKGLFISMEMSDMQVVERHVADRAGlsV 245 Proteobacteria
Feature 1           #                                                                            
2Q6T_A       258 NRVRlgqltd---------------rdfsrLVDVASRLSEa-PIYIDDTPDltLMEVRARARRLVSqn-----qvGLIII 316 Thermus aquaticus
4NMN_A       251 FKIRsgsisn---------------edlkkLEASAIELAKy-DIYLDDTPAltTTDLRIRARKLRKek-----evEFVAV 309 Aquifex aeolicu...
CBA30834     267 HGLRtarltd---------------eewprYAEAVERLANs-PIVINDLSVitYDDIEMECRKRLTmhg----alGLVIV 326 Curvibacter put...
EHN68699     115 SALEsgkidd---------------eswsrISATMGILMEkqNLFIHGKSTy-IEDIQDVIDTVELdgk----rvSVISI 174 Vibrio fischeri...
AAW62063     274 RSVFsgrrwdvpeeaatgqqpplegwewnaLQGACDEAQKl-PLEIDTRGGltVAQLRSRARRMKRskr----glDAIVL 348 Gluconobacter o...
ABY30272     258 AREPisyrdiaear-------slsdealwrLEEAQKEAARi-PLWIEPQAGvtLSQIASRARQMRLmaerqgqplAALVI 329 Methylobacteriu...
NP_746023    253 GNIDtgkamad-------------gekiqkITAAVGRMRDa-DLRICQKGGlpLSRIRNIARFQHKak-----plDLIVI 313 Pseudomonas put...
EFX92606     251 SKIRnperms--------------dedfalLGHGMTRLQDk-KLFIVDKGGltMDQIIAIAEEHIQeyg----kpNAIVI 311 Actinobacillus ...
BAI36556     268 NIFYlpatndaddgy----qgdydgdfnraIETANRLSEId-MLYIDDTPGlsLAQIVSESRRIKRekg----cvGMILV 338 Escherichia col...
YP_003614066 246 GTLRnplgmi--------------qehytrLTAATGTLLEedNYVIDGAFT--VDECIAHAERLNMdg-----glSFLAI 304 Proteobacteria
Feature 1                                                                                        
2Q6T_A       317 DYLQLMSgpgsgksgeNRQQEIAAISRGLKALARELGIPIIALSQLSRAVEArpnkrPMLSDLRESGSIEQDADLVMFIY 396 Thermus aquaticus
4NMN_A       310 DYLQLLRppv---rksPRQEEVAEVSRNLKALAKELRIPVMALAQLSREVEKrsdkrPQLADLRESGQIEQDADLILFLH 386 Aquifex aeolicu...
CBA30834     327 DSIECIEes------tDGPTDYLSISRRMKVLAREIGSPVMLVSDVSELVKSr---aDKRPILQDLDRLDRFSDLVLFTH 397 Curvibacter put...
EHN68699     175 SSIHNLKtkd---ryeSRYAEVCAISKKLKAMAIDLNIYLIVGSNVNRKCEEradkrPLIWDLRDSGTLEEDANTIMFCY 251 Vibrio fischeri...
AAW62063     349 DYFQLMRgspr-vrgrMRYEEMTEISNELKILAKELDVPIIVLAQLNRESEKrenkrPAMSDLRDTGALEQDADVIGLIH 427 Gluconobacter o...
ABY30272     330 DHIGLIRpskr--ysgNRVQEMTEISSGLKGLAKELGVPVLGLSQLSREVERredkrPILSDLRDSGSIEQDADVVLGLY 407 Methylobacteriu...
NP_746023    314 DYIGLIApepg-srqqNRNLELGAISRGIKAMAKELDVPVIVLAQLNRGIETrtakkPQMSDLRDSGEIEQDADIILIAH 392 Pseudomonas put...
EFX92606     312 DYIGLVRhgal-dgriNRTYQIGESMEKLKTFCKDNHSPVFLLAQLNRNADGs---rPTNADLRDSGSLEQDASQIIMVH 387 Actinobacillus ...
BAI36556     339 DYLTLMTaek----adRNDLAYGMITKGLKNLAKELDCVVVLLTQLNRALESrtnkrPLPSDSRDTGQIEQDCDYWVGIH 414 Escherichia col...
YP_003614066 305 DYLGLIEkpk----adRNDLAIAEITRKLKQFTLRNKVPVILLSQLNRGVEGrhdkrPNLSDLKDSGAIEQDADVIIFPY 380 Proteobacteria
Feature 1        #                                                              #    #    
2Q6T_A       397 Rdeyynp-----------------------------hsekaGIAEIIVGKQRN-GPTGTVELQFHAsHVRFND 439 Thermus aquaticus
4NMN_A       387 Rpeyytkk---------------------------pnpeeqGIAEVIIAKQRQ-GPTDIVKLAFIKeYTKFAN 431 Aquifex aeolicus VF5
CBA30834     398 Rrsest------------------------------satdlDALEIIVAKQKIgGITGTVQLSLDPaCGALED 440 Curvibacter putative s...
EHN68699     252 Nnevyg-------------------------------ennfGVAEVIIAKNDF-GERSISKLFCNSqYSRFDN 292 Vibrio fischeri SR5
AAW62063     428 RehyylqkeasagglvkrdketrdsfdarcqefqerldaarGKGDVFLVKNRH-GPEGRCRMLFDNeTTWFRD 499 Gluconobacter oxydans ...
ABY30272     408 Resyylerktdlt-----------------ddeinrlaraqNILEIEILKQRG-GPTLRIECFADLaANVLAE 462 Methylobacterium extor...
NP_746023    393 Rdadsd-------------------------------lgqsGVTEIDVVKHRH-APVGHCLLQHQGeFARFAN 433 Pseudomonas putida KT2440
EFX92606     388 Nqrdkd------------------------------tnkphKYTEWILTKNRF-GESGTVYVEFKNgQFVECD 429 Actinobacillus ureae A...
BAI36556     415 Regafd------------------------------dsvppGETELILRLNRH-GNTGTVYCIQANgAIYDTD 456 Escherichia coli O111:...
YP_003614066 381 Rdevyde-----------------------------nsnmkGIAEIIIGKYRS-GQPQTFYMGWKNgHFVNID 423 Proteobacteria

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap