Conserved Protein Domain Family
arch_gltB

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cd00981: arch_gltB 
Archaeal-type gltB domain. This domain shares sequence similarity with a region of unknown function found in the large subunit of glutamate synthase, which is encoded by gltB and found in most bacteria and eukaryotes. It is predicted to be homologous to the C-terminal domain of glutamate synthase based upon sequence similarity coupled with genome organization data, showing that this domain is found in a gene cluster with other domains of Glts, which are annotated. This domain is found primarily in archaea, but is also present in a few bacteria, likely as a result of lateral gene transfer.
Statistics
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PSSM-Id: 238481
Aligned: 12 rows
Threshold Bit Score: 277.258
Created: 6-Mar-2002
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative
Feature 1:putative subunit interface
Evidence:
  • Comment:Sharp inward bend along one face of the domain allows it to wedge itself into the helix core of the protein, based on the structure of A. brasilense glutamate synthase

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                         ##                       #  ##   #          ##
AAB90291     33 AVIDAkgLTHKELNDLMRYavve-kgvSRLKLLNVMGQRYIGTRlylpdsrKVEIEVHGFPGNDLGAFLAGHKIVVYGNA 111 Archaeoglobus fu...
Q58745        7 VVIDAkdMHYRELNEKIHEilrenpdiKKIVLKNVLGQRFIADGiq---kkDLTIEIYGIPGGDLGMFMSGPTIIVHGNA 83  Methanocaldococc...
ZP_00130599  44 VEIDAagVYYRQLNEQIHTale--ngaDTVEIFNIRGQRYIGNAve----gDVRFILHGVPGQDLGAFMRGPAIRVEGNA 117 Desulfovibrio de...
NP_622471     2 KTINAsgIHYRALNEIIKElvr--sgeDIINLKNVNGQRYIGVNls----gITKINIEGTPGNDMAAFMDGLTIEVFGNG 75  Thermoanaerobact...
ZP_00061003   1 MIINAqnLYYKELNQKIREas-----dKDIVIENCLGQRYIGDGq-----gNKNITIYGTPGNDLGAYLDGCTIRVMGNA 70  Clostridium ther...
NP_577935    31 ATIDAkgLNHKEINDLIREcai--sgiKEIVLKNVYGQRFIGTRvsl-nefRLRILIHGFPGNDLGAFLAKHEIIVYGNA 107 Pyrococcus furio...
NP_228204     2 VRIDAkgLHYKKLNDLIWEave--ngeEEIVLDNVCGQRYIGAGir----kKVKIEINGVPGNDLGVFMDGPEIIVNGNA 75  Thermotoga maritima
NP_952288     1 MNINAqgLYYRDLNQKVREava--agaSEIVLDNVNGQYFIGDGin----kPVKIIINGVPGNDLAAFMNGATVVVNDNG 74  Geobacter sulfur...
NP_560737   307 DVLDAsnYGVIELADIVRKele---rrDVVNVVNVMGHRYLGNGm-----yRGVLNAWGVVGNASANVMSGGVFNIYGDA 378 Pyrobaculum aero...
NP_342194   363 YDINAynIGYKELNYEILKlae--kgkREITVANVLGHRYIGINlparginNLRINLYGVIGNAMANLNEGNEFYVYGNV 440 Sulfolobus solfa...
ZP_00000245 346 FQIDAgaIEYNRLNQAILKg------dQAITINNVAGHRYVGINfp---dsEKDITIYGTLGNCFMNLNENNISTIYGNV 416 Ferroplasma acid...
ZP_00077668   4 VKIDArgMHYTPLNQKIRAava--dgaEEIILDNILGQRFIGDGlr----gNVRIIVNGVPGGDLGMFMSGPTCIVHGNA 77  Methanosarcina b...
Feature 1       #    #  #        ##  #  #  #        #####  ## #              ####   ## #        
AAB90291    112 QDGVGNTMDDGEIIVHGRAGDVVAMAMRGGRIMIRDDVGYRTAIHMKeyk-dkVPVLIVGGTAQDFFGEYMAGGRVVLLG 190 Archaeoglobus fu...
Q58745       84 EFAPGNTMDDGTIVIYGSSGDVTAHSMRGGKVFVRGDVGYRSGIHMKayk-dkVPVLVIGGRAKDFLGEYMAGGIIIVLN 162 Methanocaldococc...
ZP_00130599 118 QDGVGNTMDDGTIVINGMAGDVLGYAMRGGRILVRSDVGYRVGIHMKaym-dkSPVIVAGGKAGDFLGEYMAGGAIILLG 196 Desulfovibrio de...
NP_622471    76 QDAIGNTMNDGNIIIHGHAGDVIGYGMRGGSIYIKDSVGYRVGIHMKeyk-dkVPVIVIGGNAGDFLGEYMAGGCIIVLN 154 Thermoanaerobact...
ZP_00061003  71 QDATGDTMNDGTIYIHGNSGDVCGYAMRGGKIFIRDNAGYRTGIHMKqyk-ekKPVIVIGGTAGSFLGEYLAGGIIIVLG 149 Clostridium ther...
NP_577935   108 QDGVGNTMDSGRIIIHGRAGDVLGLGMRGGEIFVRDEVGYRAAIHMKgye-dkIPTIVIGKTAQDFLGEYMAGGRVIVLG 186 Pyrococcus furio...
NP_228204    76 QDGVGNTMNAGKIVVHGHAGDIIGYAMRGGHIYIKRNAGYRVGIHMKayk-enYPVVVIGGFARDFLGEYMAGGLLIVLG 154 Thermotoga maritima
NP_952288    75 QDNIGNTMNAGKVIVHGHAGDVLGYGMRGGRVHIRKDVGYRVGIHMKsyn-enKPVLIAGGKAGDFFGEYMAGGVLVLLG 153 Geobacter sulfur...
NP_560737   379 QDDLGDAMNDGVIAVYGSVGDAVGQAKRGGEIYIYGNAGTRAAIQHR------GGVLVIGGSAGDYLGEYMGGGVVIVLR 452 Pyrobaculum aero...
NP_342194   441 ADDCCDTMHGGKVVIYGDARDVLAQTFQNGKIFVKGNAGNRVGIQMReyk-dkRPYLIIGGIVDDYLGEYMAGGSIIVFG 519 Sulfolobus solfa...
ZP_00000245 417 ADDCCDSMGGGMVKIYGDAGDILCQALNGGKVYVLGNAGNRACIQMReyv-dkSTVVVINGKFDDYLGEYMSGGTLLVLS 495 Ferroplasma acid...
ZP_00077668  78 EHAPGNTMDKGMLVIHGSAGDAVAHSMRGGKVFIKNNIGYRGGIHMKqydveaRPILVVGGTAHSFLGEYMAGGLVLVLG 157 Methanosarcina b...
Feature 1                     #  #  #                                                           
AAB90291    191 LNLgdkp---hrarYIGTGMHGGIMYIRGkveqwqLGKEVGIVd--MEEEDWkflekhigdfcke---fgfekdeilggk 262 Archaeoglobus fu...
Q58745      163 IDEkgndlgkvkgrMIGTGIHGGAIYIRGeidkdqLGVAADIKe--FTEEDLekikpyieefckwfnlpedvknkllnsk 240 Methanocaldococc...
ZP_00130599 197 MDTskpea-pitgrSLGTGMHGGVIYIRGtvpryqLGPGLHFEp--LTPEDTafitkhvrdfcte---fgmdaamvldad 270 Desulfovibrio de...
NP_622471   155 LKNdedi----vgeYCGTGMHGGVIYLRGdvedykLGKEVIKEe--IDDRDYvfiqkyvenfcqy---fdydfqkimdhs 225 Thermoanaerobact...
ZP_00061003 150 LNSedtv---pvgdFCGTGMHGGKIYLRCirlpqdLPKQVIARe--ANEEDMeeikgyieefcre---fgkdkeqilnsk 221 Clostridium ther...
NP_577935   187 LGVekh-----rmrYIGTGMHGGKIYIRGkvekhqLAKEVTFGe--ITDEDLeilekyvtefcni---fgceqdeilgds 256 Pyrococcus furio...
NP_228204   155 LEKdedgn--iagnYVGTGMHGGEIFLRGtveehkLGKEVKIFq--PTEEDInrikpyveefcrl---fdydseeilnee 227 Thermotoga maritima
NP_952288   154 MFTddpek-pkhgfRFGTGMHGGTIFVRGgvdeskLSGEVGVFe--LTDGDRaelerylkdycad---fgidfsevmaee 227 Geobacter sulfur...
NP_560737   453 KTWdee-----igwKIGSGMVGGVIFIRGevprekIGYGFDLKr--LRRYLEllyregeisre------fyesaaknpel 519 Pyrobaculum aero...
NP_342194   520 KGYngep----vgnFVGTGMVGGRIYIRGkvspskLGLQPPKYe-vMRLIKAlfleglisseey-----dslkneeyigi 589 Sulfolobus solfa...
ZP_00000245 496 NSArnf------gkYIGSGMIGGTIFIRGkvnsrnIGIQPPETavnGMLNALrksel------------------itdke 551 Ferroplasma acid...
ZP_00077668 158 IGKdkam----tdrGIGSGIHGGEIILRGevddflLGVGAKKFk--FTESDLeriaptiknfceq---fgydpaefldtn 228 Methanosarcina b...
Feature 1               
AAB90291    263 FLKLKPVT 270 Archaeoglobus fulgidus DSM 4304
Q58745      241 WTKIAPIS 248 Methanocaldococcus jannaschii
ZP_00130599 271 FAKVKPFS 278 Desulfovibrio desulfuricans G20
NP_622471   226 FVKLYPIG 233 Thermoanaerobacter tengcongensis
ZP_00061003 222 FFCLVPNT 229 Clostridium thermocellum ATCC 27405
NP_577935   257 FTLIVPKS 264 Pyrococcus furiosus DSM 3638
NP_228204   228 FIILKPYT 235 Thermotoga maritima
NP_952288   228 FVKVLPKS 235 Geobacter sulfurreducens PCA
NP_560737   520 VAKLDGRA 527 Pyrobaculum aerophilum str. IM2
NP_342194   590 VNKLKGEA 597 Sulfolobus solfataricus
ZP_00000245 552 YHKLKGMS 559 Ferroplasma acidarmanus
ZP_00077668 229 YTKIGPAS 236 Methanosarcina barkeri

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