Conserved Protein Domain Family
KDGDH

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cd00951: KDGDH 
5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH)
5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Statistics
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PSSM-Id: 188638
Aligned: 12 rows
Threshold Bit Score: 411.715
Created: 6-Mar-2002
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative activecatalytic
Feature 1:putative active site [active site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                 ##                                    
P42233       11 SEGLLSFPLTDFDVaGDFRADTYAKRLEWLAPyGASALFAAGGTGEFFSLQASEYSEIIKVAVDTcrGEVPILAGTGGPT 90  Pseudomonas putida
Q8NT57       14 KDGLLSFPATAFQDdLEVDEAAYVEHIEWQSSyPVAGLFAAGGTGEGFSLTVEENHRVTQLAVQAssPEVPVLGSATGST 93  Corynebacterium ...
P42235        8 PAGILGFPVAPFNTqGTLEEEALFQNIEFLLNeGLEAIFIACGSGEFQSLSQKEYEQMVEVAVSAagGKVPVYTGVGGNL 87  Bacillus subtilis
Q9RDE8       26 AASVLSFPLTSFHEdGSFDADGYRAYVAERLAaGPGALFPACGTGEFFSLDEDEYRQAVAIAVEEtaGSVPVVAGTGYGW 105 Streptomyces coe...
ZP_00166619  12 SEGLLSFPVTDFDTqGNFRPETYVKRLEWLAPyGASALFAAGGTGEFFSLTPDDYSNVIRTAVETcaGKVPILAGAGGPT 91  Ralstonia eutrop...
Q8XRK5       14 GTGLLSFPVTHFKSdLSFDEAAYRANLSWLFShEAAGLFAAGGTGEFFSLTPAETDRVVRAAVAEtgGRLPVIAPAGYGT 93  Ralstonia solana...
Q89HW8       14 GSGLLSFPVTPFKAdYSFDEATYRANMDWLCGyDVAGLFAAGGTGEFFSLTPTEVPQIVKIAVEEtkGRVPVLAGTGYGT 93  Bradyrhizobium j...
Q9X9X7       13 PSGPLFFPVTAYGPdGGLDLDVYRTHVRRGVEaGAAAVFACCGTGEFHALTPEEFAACVRAAVEEsaGRVPVLAGAGYGT 92  Streptomyces coe...
Q92YS6       11 GSGLLSFPVTHFTSdYKLNLESYRRHVEWLSGfEAAALFAAGGTGEFFSLSPNEVGQVTRAAKDVs-GEVPIIAGCGYGT 89  Sinorhizobium me...
ZP_00294335   3 FNGILFFPLTPFDErGDVNEAAFEQHVASGLDhGAGGVFAACGTGEIHALSAEEHARVVRRAVAVtaGRVPVIAGAGGSV 82  Thermobifida fusca
Q8UB77       12 GSGLLSFPVTHFDAeGRFAADSYREHVEWLAGyKAPVLFAAGGTGEFFSLKPDEIPTIVAAAKEVa-GETAIVSGCGYGT 90  Agrobacterium tu...
Q8P5U0       15 GAGLLSFPVTHFDAdMAFDEPAYRSNLDWLSShPAAGLFAAGGTGELFSLTLDEVDRAVRAAVTQtaGRMPVIAPAGYGT 94  Xanthomonas camp...
Feature 1                                                         # #                       #   
P42233       91 RqAIAYAQEAERlGAAGVLLLPHYLteASQEGLVSHVEQVCksvdFGVVVYNRNvCRLNADSLEKLadrcpNLIGFKDGv 170 Pseudomonas putida
Q8NT57       94 KsAIANAQGAEAaGAEGVLLLPPYLteCDAEGLYNHAAAVCestsLGVIVYNRAnAIYSPEVIARLserypNFIGFKDGt 173 Corynebacterium ...
P42235       88 StALDWAQLSEKkGADGYLILPPYLvhGEQEGLYQYAKTIIestdLNAILYQRDnAVLSVEQIKRLte-ceQLVGVKDGv 166 Bacillus subtilis
Q9RDE8      106 AqALRFARIAEDaGADALLVMPHYLtaAPQDGLVAQMERIAagtrLPLIAYQRGqVAYTAESVRRLtr-vpGVIGLKDGh 184 Streptomyces coe...
ZP_00166619  92 RvAIAYAQEAQRlGAKGILLMPHYLteACEEGIANHIEEVCkavnIGVIVYNRAnSRIGADLLERVvdrcpNLIGFKDGv 171 Ralstonia eutrop...
Q8XRK5       94 AmAKEYCQAAEAaGADGILLLPPYLteASADGVAAHVEQVCkstrLGVIVYNRAnQVLDENHLERLaercpNLVGFKDGv 173 Ralstonia solana...
Q89HW8       94 AiAREIAVGAEKaGADGLLLLPPYLthSEQDGLAAHVEAVCaavkIGVIVYNRDnAILQPDTLARLaercpNLVGYKDGi 173 Bradyrhizobium j...
Q9X9X7       93 AlAVRYARLAEQaGADGLLAMPPYLvlAGQEGLVRHYREVAaatpLPVIVYQRDnAVFTPESVVELar-tdGVVGLKDGl 171 Streptomyces coe...
Q92YS6       90 SlAVETAKIVEEaGADGILLLPHYLteAPQEGIYAHVKAVCdstgLGVILYNRAnSVANADTVARLaeacpNLIGFKDGt 169 Sinorhizobium me...
ZP_00294335  83 StAIEQATAARElGADGVLLLPPYLvhAPQRGLVEYVRAVTsavdIPVIVYQRGtMVFTPDSAAELae-ipTVVGFKDGv 161 Thermobifida fusca
Q8UB77       91 EiAVDIARSVEKvGADGILLLPHYLidAPQEGLYAHIKKVCqsvgIGVMVYNRDnSVLQADTLARLcdecpNLVGFKDGt 170 Agrobacterium tu...
Q8P5U0       95 AiAVAMAQAAERnDADGILLFPPYLteCDADGVAEHVERVCkatsLGVIVYGRAnARLDDVALARVaercpNLVGYKDGi 174 Xanthomonas camp...
Feature 1                                 #                                                     
P42233      171 GDIESMVSIRrr-----lGERLTYLGGLPTAEVYAAAYKAMGvPVYSSAVFNFIPKTAMDFYRAVAseDHETVGKLIDDF 245 Pseudomonas putida
Q8NT57      174 GNIEHLAKITtl-----cGDRLFYLGGLPTAETFALPLLQMGmSTYSSAMFNFIPDFALSFYADVRaqDSAAVKQKLSDF 248 Corynebacterium ...
P42235      167 GNMDLNINLVyt-----iGDRLGWLNGMPMAEVTMPAYLPIGfHSYSSAISNYIPHISRMFYDALKngNDELVKELYRHV 241 Bacillus subtilis
Q9RDE8      185 SDLDRLQRAVla-----aPDDFLFFNGAATAEVQARAYAAVGvPAYSSAVHAFAPEIANAFLAALRggDTGTVDKLLRDF 259 Streptomyces coe...
ZP_00166619 172 GEIEAMVRVRrk-----lGDRLAYLGGLPTAEVYAAAYKALGvPVYSSAVFNFIPRTAMEFYRAVAadDHATIGRLIDDF 246 Ralstonia eutrop...
Q8XRK5      174 GDLELMTRIYsr-----lGERFTYIGGLPTAETFAMPYLTMGvTTYSSAIFNFVPKFALDFYAAVRaaDHAKAYAMLNDF 248 Ralstonia solana...
Q89HW8      174 GDIELMTRVYtk-----lGDRLTYIGGLPTAETFALPYLDMGvTTYSSAVFNFVPEFATNFYAAVRkrDHATIHAGLKDF 248 Bradyrhizobium j...
Q9X9X7      172 GDLDLMQRIVsavrtelpGEEFLYFNGLPTAEQTQLSYRALGvPLYSSAVFCFAPEIAVAFHRALRegDDATVHRLLDGF 251 Streptomyces coe...
Q92YS6      170 GKVDLVRHVTak-----lGDRLCYIGGMPTHELFAEGFNGVGvTTYSSAVFNFVPELAQRFYRAMRagDRAVMEGILHTF 244 Sinorhizobium me...
ZP_00294335 162 GDVGTMRQIVltvr-qrrGDNFVFFNGLPTAELTFHAYQGIGvPLYSSAAFAFVPEVATAFYRAAHa-GEELADRLLRDF 239 Thermobifida fusca
Q8UB77      171 GDIGLVRQITak-----mGDRLMYLGGMPTAELFAEAYLGAGfTTYSSAVFNFVPGLANEFYAALRagERATCERILVDF 245 Agrobacterium tu...
Q8P5U0      175 GDVERMTRIYar-----lGDRLLYVGGLPTAETFALPYLEMGvTTYSSAIFNFLPEWALSFYAAVRarDHATIYRELNDF 249 Xanthomonas camp...
Feature 1                                                              
P42233      246 FLPYLDIRNRceGYGVSIVKAGARLVGh-DAGPVRAPLtdLLPNEMEQLDALIKK 299 Pseudomonas putida
Q8NT57      249 VLPYLDIRDRaqGYGVSIVKGGLKAVGr-NAGGVRPPLrnLSEQDIADLSDLLAT 302 Corynebacterium glutamicum
P42235      242 ILPINDIRKQrkGYAVSLIKAGMEIMGlnVRNTARPPVgpVEKDHYQQLEAILKQ 296 Bacillus subtilis
Q9RDE8      260 YVPLVELRDRvpGYAVSLVKAAARLRGc-PVGPVRAPLtdPSPADLAALTTLLTT 313 Streptomyces coelicolor
ZP_00166619 247 FLPYLDIRNRrqGYAVSIVKAGARLVGy-DAGPVRAPLtdLTADETEKLDALIRK 300 Ralstonia eutropha JMP134
Q8XRK5      249 VLPYIALRNRkrGYAVSIVKAGMKVIGr-SAGPVRAPLtdLTEAELAELSALVAR 302 Ralstonia solanacearum
Q89HW8      249 ILPLIAIRNRkkGYAVSIIKAGMKVIGr-DSGPVRPPLtdLTEQEIAELTALVKK 302 Bradyrhizobium japonicum
Q9X9X7      252 YRPFVELRARgrGYAVALVKAGVRLRGl-DVGEVRTPLqePAEEHVKQLVQIIER 305 Streptomyces coelicolor
Q92YS6      245 FFPFAALRDRkaGYPVSIIKAGVELAGf-APGPVRPPLvdLTGEEREILQGLIEA 298 Sinorhizobium meliloti
ZP_00294335 240 YDPLVRLRDRvpGYAVSLIKAGARLRGa-DVGGVRPPFvdPSEEHLAELRTIIDT 293 Thermobifida fusca
Q8UB77      246 FYPFMAIRNRakGYAVSAVKAGVRLQGf-NAGPVRAPLkdLTNEEIGMLEALIGT 299 Agrobacterium tumefaciens str. C58
Q8P5U0      250 VLPYTVLRNRraGYAVSIVKAGMRAVGr-PAGPVRTPLadLTEDEFAQLTQLIGG 303 Xanthomonas campestris pv. campestris

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