1GVF,1RV8


Conserved Protein Domain Family
TBP_aldolase_IIB

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cd00947: TBP_aldolase_IIB 
Click on image for an interactive view with Cn3D
Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Statistics
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PSSM-Id: 238477
Aligned: 66 rows
Threshold Bit Score: 262.848
Created: 6-Mar-2002
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 12 residues -Click on image for an interactive view with Cn3D
Feature 1:active site
Evidence:
  • Comment:defined by using 3.5 A
  • Comment:substrate (phosphoglycolohydroxamate, PGH) binding causes a conformational change in the mobile loop of the enzyme.
  • Structure:1GVF

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                  ## 
1GVF_A      6 TKYLLQDAQANGYAVPAFNIHNAETIQAILEVCSEMRSPVILAGTpGTFKHIa-lEEIYALCSAYSTtynMPLALHLDHH 84  Escherichia coli
NP_656368   6 MKDILMKANQENYGVGAFSVTNMEMVMGAIKAAEELSSPLILQIAeVRLNHSp-iHMIGPLMVAAAKqatVPVAVHFDHG 84  Bacillus anthracis...
NP_781193   6 MKQLLKNAQKGQYGIGAFSISNMETIIGAVRAAEELKSPIILQIAeSRLKHSp-lYLIGPVMIEAAKkssVPIAVHLDHG 84  Clostridium tetani...
NP_561002   6 MTELLDAAREKNYAVGSFSIANMEMVKGALKAAEEMHSPMILQIAeVRLTNSp-lELIGPLMVSAAKnakVPVAVHFDHG 84  Clostridium perfri...
NP_465658   5 MKGMLERANKEHYAVMAINCFNLETARAVIDAAQELRAPIIIDLLqDHLTSHlgsRFLTKPIIKMAEeasVEVAINLDHG 84  Listeria monocytog...
YP_048465   5 MKALIDDAYQQQYAVLAINCFNLETARAAIAAAEQQRAPLILNVYqGHSAHFp-pHLAVPLVKALAEratVPVALSLDHG 83  Erwinia carotovora...
NP_756346   5 MKSMVMKAWHEHYALLAINCMNLESAHAAIRVAEKNRAPIILNLYqGHLAHFp-aPVAAAVVKTLAEsasVPVALALDHG 83  Escherichia coli C...
XP_388220  45 TYQILKAADEGGYGVVAPIVYNIEHILAFVQAAEVKRSPLIIQFFpWAITFSk-gLLIHAAAHAAREa-sVPIAIHLDHA 122 Gibberella zeae PH-1
XP_406025  10 HLRILRDAEAGGYGVMATISYNIEQVKGMIRAAEIARSPLILQFFpWVITTYd--GMLVRAAAEEAKrasVPISIHLDHA 87  Aspergillus nidula...
EAL21838    8 TLDILKKAEEGGYGIVAQTCYDANMAVALVRAAERNKSPAILQLFpVTLAAGg--GPLLQYCLDVAHnasVPISVHLDHA 85  Cryptococcus neofo...
Feature 1                                                                                     
1GVF_A     85 esLDDIRRKVHAG-----VRSAMIDG-SHFPFAENVKLVKSVVDFCHSQDCSVEAELGRLG-------GVEDDmsvda-e 150 Escherichia coli
NP_656368  85 mtFEKIQETLEIG-----FSSVMFDG-SHYPLEENIQKTKEIVELAKQYGATVEAEIGRVG-------GSEDGsedi--- 148 Bacillus anthracis...
NP_781193  85 esIDTIKEALDLG-----FTSVMYDG-SHFNLSKNIENTKEVVSLTKEYGASVEGEVGKVG-------KKEDGlgdd--- 148 Clostridium tetani...
NP_561002  85 ltLENIEKALKIG-----FTSVMIDG-SHLSFDENVKITKRVKELADKYGAAIEAEIGQVG-------GSEDGsedi--- 148 Clostridium perfri...
NP_465658  85 hdVAIVKQCLADG-----FSSVMMDA-SSFPYEENVAITKKMVEFAEVYHASVEAEVGNIG-------AVTGDnytn--- 148 Listeria monocytog...
YP_048465  84 taFNLIGQAFRAG-----FTGLMIDA-SSYPLAENIQRTQQVVTIAATAGVCVEGELGHIAdap--vyDLEDAtv----- 150 Erwinia carotovora...
NP_756346  84 knPDCIRQAFRAG-----FSGLMIDA-SAFPLEENVRQTRAVVELAASAQLCVEGELGHLAdaprydqAANADm------ 151 Escherichia coli C...
XP_388220 123 qdAAIIRHAADNLp----FDSIMVDM-SHYEMEENLAKTKELVSYCHARGIATEAEPGRIE-------GGEDGiadtadl 190 Gibberella zeae PH-1
XP_406025  88 qsEELIERAAELP-----FDSIMVDM-SHHEKEDNLRKTRHWVRHCNERHIVTEAEPGRIE-------GGEDGvmdtagl 154 Aspergillus nidula...
EAL21838   86 tdPEHLELSIGLAekgikFDSIMVDAsHADTDEENIAIAVPYIKRCRAAGVATEVELGRLE-------GGEAGlreit-- 156 Cryptococcus neofo...
Feature 1                                 ### #                              ## #             
1GVF_A    151 saflTDPQEAKRFVELTgvDSLAVAIGTAHGLYsk--tPKIDFQRLAEIREvv----dVPLVLHGASDVPDEFVRRTIEL 224 Escherichia coli
NP_656368 149 emllTSTTEAKRFAEETdvDALAVAIGNAHGMYng--dPNLRLDRLQEINDvv----hIPLVLHGGSGISPEDFKQCIQH 222 Bacillus anthracis...
NP_781193 149 tisiTTVEDAEKFYKETnvDALAIAIGNVHGMYvg--kPNLDIKRLIEVNSni----eVPLVLHGGSGITKEEFKNCIKN 222 Clostridium tetani...
NP_561002 149 kmkvTNVEDAKRFVQETkvDALAVAIGNAHGVYkg--tPKLRFDVLENLREni----eTPLVLHGGSGITPEDFKECKNK 222 Clostridium perfri...
NP_465658 149 qemyTDPKVAIDFAKRTgiDALAISYGSSHGDYpegftPAFQFDIVREIKSat----nMPLVLHGGSGCGAENIRESVRL 224 Listeria monocytog...
YP_048465 151 --kmTQVEDVIPFIRQTgiDLLAVSVGTAHGIYpagvtPRIDFERLEALHQas----tVPLALHGGSGTKADDIRRVSRH 224 Erwinia carotovora...
NP_756346 152 ---mTQPTDVEPFIVQTgiDLLAVSVGTAHGMYapgvvPAIDFQRLAEIFHcs----sVPLALHGGSGTPFDQLQLCTTL 224 Escherichia coli C...
XP_388220 191 egalTTEEQVEDFIATGi-DFLAPAFGNVHGEYgk-rgPVLEFDRLEKICAkvn--grVRVVLHGTNDFPENIMQACIKG 266 Gibberella zeae PH-1
XP_406025 155 earfTTAEEVDEFAATGv-DTLAPSFGNVHGEYgp-qgPRLDFESIRFAKVrerangrVRLAVHGTNGFSPELMKQCVAA 232 Aspergillus nidula...
EAL21838  157 gamlTDPANAEEFMKATgaDILAPSYGNLHGSYkfiggPKYKLEILKDLQErfr-griPYLCAHGTDELPDSLFQDLVKA 235 Cryptococcus neofo...
Feature 1          # ##                                                 
1GVF_A    225 GVTKVNVATELKIAFAGAVKAWFaenpqgnDPRYYMRVGMDAMKEVVrnkinvCGSAN 282 Escherichia coli
NP_656368 223 GVRKINVATATFQNVITAVNNTVlnt-pysDYFTYHQDVIKAAYENVkshmqiFGSEN 279 Bacillus anthracis str. A2012
NP_781193 223 GITKINVATATFNSVIDKVNELFkts-nsvDYFTYHDVVINAAYDNVkkhidiFGSSN 279 Clostridium tetani E88
NP_561002 223 GIRKINIATATFNSVEESVRKLYvdn-ekkDYFTLQATEVQGAYENVkkhmdiFESVN 279 Clostridium perfringens str. 13
NP_465658 225 GINKINVGSDFMKAQVNQIKTNLkes-pavNYVDLIHETIKAGTKAVkyyihlSGSTG 281 Listeria monocytogenes EGD-e
YP_048465 225 GVAKINVGAAVFEAGKTALQQALhqy-ptmELSDLLATMESACRDVVadylswSGSTN 281 Erwinia carotovora subsp. atroseptica SC...
NP_756346 225 GVAKINVGAAIFERGKSALLHTLchd-isiELVDALKAMELAFEEAItpylqaSGSIG 281 Escherichia coli CFT073
XP_388220 267 GVSKINVNKLVLDDYLIHVKEQAsk----lNLTTLMEEGVEKAQKLTewqmdvCGSTG 320 Gibberella zeae PH-1
XP_406025 233 GCCKINVNRCVLDDYYEHLRANAgk----mPHTQLIEEGMEKVTQATikwmeiIGSVG 286 Aspergillus nidulans FGSC A4
EAL21838  236 GVSKFNINSWARDPYVETLGKELsa---gtPFPDASEKAIEAFAQVCdhmmelLGSKG 290 Cryptococcus neoformans var. neoformans ...

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