1R1B,1FYJ


Conserved Protein Domain Family
WEPRS_RNA

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cd00936: WEPRS_RNA 
Click on image for an interactive view with Cn3D
WEPRS_RNA binding domain. This short RNA-binding domain is found in several higher eukaryote aminoacyl-tRNA synthetases (aaRSs). It is found in multiple copies in eukaryotic bifunctional glutamyl-prolyl-tRNA synthetases (EPRS) in a region that separates the N-terminal glutamyl-tRNA synthetase (GluRS) from the C-terminal prolyl-tRNA synthetase (ProRS). It is also found at the N-terminus of vertebrate tryptophanyl-tRNA synthetases (TrpRS). This domain consists of a helix-turn-helix structure, which is similar to other RNA-binding proteins. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions, which are important for the formation of aaRSs into multienzyme complexes.
Statistics
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PSSM-Id: 238473
Aligned: 37 rows
Threshold Bit Score: 63.7936
Created: 24-Sep-2002
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
tRNA binding
Conserved site includes 8 residues -Click on image for an interactive view with Cn3D
Feature 1:tRNA binding site [nucleic acid binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1             # #  #    #     #   #       #       #        
1R1B_A       2 VYDKIAAQGEVVRKLKAEKAPK-AKVTEAVECLLSLKAEYKEKT-GKEYVPG 51   Chinese hamster
1FYJ_A       5 LYNRVAVQGDVVRELKAKKAPK-EDVDAAVKQLLSLKAEYKEKT-GQEYKPG 54   human
P28668     748 LDSQISQQGDLVRDLKSKKAAK-DQIDVAVKKLLALKADYKSAT-GKDWKPG 797  fruit fly
P28668    1122 LTQEINAQGEKVRAAKGNKAAK-EVIDAEVAKLLALKAKYKEVT-GTDFPVA 1171 fruit fly
P28668     894 ILSQITAQGDKVRELKSAKADK-ATVDAAVKTLLSLKADYKAAT-GSDWKPG 943  fruit fly
EAA07591   759 INTKIIAQGDLVRELKGKKAPK-AEVDGQVKALLDLKAQYKQATgGQEWKPG 809  Anopheles gambiae str. PEST
CAE73796  1071 LLEEINQQGAAVREAKAKDPKS-QESTDAINKLLALKATFKKVT-GKDVPAP 1120 Caenorhabditis briggsae
CAB00060  1017 LSKQIDDQALLVRELKMKDAKS-QETKDAIAKLLQLKKQYKDAT-GSDYKPA 1066 nematode
CAB00060  1089 LLKEIEEQGAVVRDAKSKDPKS-QDSADAINKLLALKANFKKAT-GKDFPAP 1138 nematode
CAE56448     5 IVKQIEEQGNEVRRLKGDKSSTeDAKNEAIQKLLALKLAYKEAT-GQDYAAP 55   Caenorhabditis briggsae

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