1FUX,1FJJ,2EVV


Conserved Protein Domain Family
PEBP_bact_arch

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cd00865: PEBP_bact_arch 
Click on image for an interactive view with Cn3D
PhosphatidylEthanolamine-Binding Protein (PEBP) domain present in bacteria and archaea
PhosphatidylEthanolamine-Binding Proteins (PEBPs) are represented in all three major phylogenetic divisions (eukaryotes, bacteria, archaea). The members in this subgroup are present in bacterial and archaea. Members here include Escherichia coli YBHB and YBCL which are thought to regulate protein phosphorylation as well as Sulfolobus solfataricus SsCEI which inhibits serine proteases alpha-chymotrypsin and elastase. Although their overall structures are similar, the members of the PEBP family have very different substrates and oligomerization states (monomer/dimer/tetramer). In a few of the bacterial members present here the dimerization interface is proposed to form the ligand binding site, unlike in other PEBP members.
Statistics
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PSSM-Id: 176643
Aligned: 270 rows
Threshold Bit Score: 83.0338
Created: 6-Mar-2002
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
substrate
Conserved site includes 12 residues -Click on image for an interactive view with Cn3D
Feature 1:substrate binding site [chemical binding site]
Evidence:
  • Structure:1FJJ_A: Escherichia coli PEBP binds Hepes
  • Structure:2EVV_A: Helicobacter pylori Hp0218 binds glycerol, contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                           ##       # #                 
1FUX_A         4 QVTSnEIKt-GEQLTtshvfsgfgceGGNTSPSLTWSGvpegTKSFAVTVYDPDaptgSGWWHWTVVNIPat-vtYLPVd 81  Escherichia coli
YP_001624715  34 LVLSsSEFdaNAAHLlkha---gkglGENISPQLSIENilpsSIGVLLLLEDSDvplpRPIVHTVAIFNAel-ivNGTVt 109 Renibacterium s...
YP_003116787  16 LSLTsPDFadGEPIPhvhag--vrlgGEELSPALAWSTapseTAELLLVIEDPDapmaTPYIHGLALIEPsl-tgLSQGa 92  Catenulispora a...
YP_891056     29 IVVTsDAFddGGSMPlkca---grgvGDNQSPDLRWTGvpdgTAALVLIIEDDDvplpRPLMHTIAILDPqr--dHIDAg 103 Mycobacterium s...
EFA78602      34 SLTSiDFKd-NEHMPltssp--aapeGKNMSPQIQWENipeeAKELVLILEDPDaplpKPICHFVIKGIDpkttkCINAg 110 Polysphondylium...
YP_003300726   5 ELHSpAFDd-HAPIPreh-----shaSGDVSPPLEWSQvpdeAVELALVCEDPDap-gGTFAHWLLAGIPpe-teGIDAg 76  Thermomonospora...
YP_001105019  79 RLSSsAFSd-HAMLPhrc-----srdGGNIAPALEWSQvpdgTAELAVLCEDPDap-nGTFVHWVVSNIPpt-vtRIGGg 150 Saccharopolyspo...
YP_002131408  26 LVTCpVQEa-DGRLPdrh-----sayHDNISPPLQWSNvp-dVKAWALVVEDPDapreEPFVHWMLWNVRgd-ihSIPEg 97  Phenylobacteriu...
ZP_05535844    5 DLRSnAFNd-HSFIArry-----syeGPNISPPLTWSGvpddATELVLLCEDPDap-sGTFAHWVVVGIDph-sdGVEAg 76  Streptomyces vi...
1FJJ_A         3 KLISnDLRd-GDKLPhrhvfngxgydGDNISPHLAWDDvpagTKSFVVTCYDPDaptgSGWWHWVVVNLPad-trVLPQg 80  Escherichia coli
Feature 1                                     #####   # # #                                      
1FUX_A        82 agrrdgtklptGAVQGRNd---FGYAGFGGACPPkgdKPHHYQFKVWALKtekipv---dsnssGALVGYXLNANKIATA 155 Escherichia coli
YP_001624715 110 laa----galtENTLMPAs---FGRRGYEGPHPIaghGPHHYEFSAYAFSaddaaa---friksLKALKSLPSGKILARG 179 Renibacterium s...
YP_003116787  93 ls-------aeAPGPGVRllrsSSGRGWIGMAPPkahGPHRYVFQLFALAepltittkggaeeaQPRKVLAAAGPVLARG 165 Catenulispora a...
YP_891056    104 alq-----ptsADIRFLKt---PLGRGYSGPRPIpghGCHHYRFHLFALSspvpa-----tvetKGQLLHAIRRYATARG 170 Mycobacterium s...
EFA78602     111 emv----asnpSITFAPAa---FGRLGYHGPRPIkahGSHRYIFQMYALSdqlp------qpknKDELVKQMIPLIISRG 177 Polysphondylium...
YP_003300726  77 ee-------ipGAVAGRNd---YGALGYGGPHPPagdAPHRYFFRLTALSepsgl----rpgftADDLQEAIEDKVVGEG 142 Thermomonospora...
YP_001105019 151 dv-------pdEAVESRNd---FGDRGWGGPHPPagdEAHRYFFRVFASEqplgl----gadatADDLRDALAGHELARG 216 Saccharopolyspo...
YP_002131408  98 lgnnpqlvspqGAIQGKNd---MGGYGWFGPRPPaghGVHRYYFQVFALNdwiem----gpdtpLNELLNALKARTLAKG 170 Phenylobacteriu...
ZP_05535844   77 hc-------ppGGTELVNs---YGQHGWGGPHPPpgdDAHHYFFRLYALSepcvl----pdapaAKQVHEEVEKRRLADG 142 Streptomyces vi...
1FJJ_A        81 fgsgl-vaxpdGVLQTRTd---FGKTGYDGAAPPk-gETHRYIFTVHALDieridv---degasGAXVGFNVHFHSLASA 152 Escherichia coli
Feature 1              
1FUX_A       156 EITPVY 161 Escherichia coli
YP_001624715 180 RLVGSF 185 Renibacterium salmoninarum ATCC 33209
YP_003116787 166 RIDGLY 171 Catenulispora acidiphila DSM 44928
YP_891056    171 TLTGVY 176 Mycobacterium smegmatis str. MC2 155
EFA78602     178 VLTGTF 183 Polysphondylium pallidum PN500
YP_003300726 143 VLVGTF 148 Thermomonospora curvata DSM 43183
YP_001105019 217 NIVGLF 222 Saccharopolyspora erythraea NRRL 2338
YP_002131408 171 EMMATY 176 Phenylobacterium zucineum HLK1
ZP_05535844  143 TLVGLY 148 Streptomyces viridochromogenes DSM 40736
1FJJ_A       153 SITAXF 158 Escherichia coli

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