1GAX


Conserved Protein Domain Family
ValRS_core

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cd00817: ValRS_core 
Click on image for an interactive view with Cn3D
catalytic core domain of valyl-tRNA synthetases
Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Statistics
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PSSM-Id: 185677
Aligned: 29 rows
Threshold Bit Score: 425.893
Created: 24-Sep-2002
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 21 residues -Click on image for an interactive view with Cn3D
Feature 1:active site [active site]
Evidence:
  • Structure:1GAX_A; Thermus thermophilus ValRS binds valyl-adenylate analog, defined using 4.0 A contacts.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1            ####     # ##  #                        #                                
1GAX_A     34 PPFVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTDHAGIATQVVVERLLlkegk-trhdlGREKFLE 112  Thermus thermophilus
Q9Z987     38 PPYSVIMPPPNVTGVLHMGHALVNTLQDVLVRYKRMSGFEVCWIPGTDHAGIATQAVVERHLqasegkrrtdySREDFLK 117  Chlamydophila pne...
P56000     42 KRFCLMMPPPNVTGVLHIGHALTLSLQDILARYKRMDGYKTLYQPGLDHAGIATQNVVEKQLlsqgi-kkedlGREEFIK 120  Helicobacter pylori
P47576     37 NSFTAILPPPNLTGTLHIGHAFEVSITDQIMRFKKMQGFSINWIPGFDHAGIATQTKYEKIAlkenq-kyfdaDDDKKSE 115  Mycoplasma genita...
O28059     34 PHYIIDTPPPYPTGSFHIGHALNWCIIDFIARYKRMNGYEVMFPQGWDCHGLPTEVKVEEKYgikk----gdiPRDEFRR 109  Archaeoglobus ful...
Q58413     34 PPYIIDTPPPYPTGRLHLGHALNWTYMDIIARYKRMKGFNVLFPQGWDCHGLPTEVKVEEIHgitk----sdvDRHKFRE 109  Methanocaldococcu...
O58052     34 PSYAIDTPPPFTSGTLHLGHVLSHTWIDIIARYKRMRGYNVLFPQGFDNHGLPTELKVEKEFgit------kdQPEEFLK 107  Pyrococcus horiko...
NP_393519  31 KVFAIDTPPPTVSGKMHMGHSFSYPHIDFIARYKRMRGYHVFFPWGFDDNGLPTERYVEKETgikp----sdsNVEEFIR 106  Thermoplasma acid...
NP_342389  77 PRFVIDTPPPFTSGELHMGHAYWVTIADTIGRFKRLEGYNVLLPQGWDTQGLPTELKVQYKLgip------kdNRQLFLQ 150  Sulfolobus solfat...
NP_281122  36 TQYVIDTPPPYPSGNLHLGHALGWSYIDFVARYRRLKGDAVLFPQGWDCHGLPTEVKVEEVNdihr----tdvPSDEFRE 111  Halobacterium sp....
Feature 1                                                                                     
1GAX_A    113 RVWQWKEESGGTILKQLKRLGASADWSREAFT-MDEKRSRAVRYAFSRYYHEGLAYRAPRLVNWCPRCetTLSDLEVete 191  Thermus thermophilus
Q9Z987    118 HIWAWKEKSEKVVLSQLRQLGCSCDWDRKRFT-MEPLANRAVKKAFKTLFENGYIYRGYYLVNWDPVLqtALADDEVeye 196  Chlamydophila pne...
P56000    121 KVWEWKEKSGGAILEQMKRLGVSAAFSRTRFT-MDKGLQRAVKLAFLKWYEKGLIIQDNYMVNWCTKDg-ALSDIEVeye 198  Helicobacter pylori
P47576    116 MIMNWALNQSEIIKNQLKSLGVCLNWSETKFT-LSEQANKIVNNCFKNLYENGFIYQAYTLVNWDTKLntAISNIEVink 194  Mycoplasma genita...
O28059    110 LCVEFTEENIAKMRETARRMGYSIDWSKEYIT-MYPEYYSKTQLSFVRMYNKGLIYRDYHPVVFCPRCetTIALAEIeyr 188  Archaeoglobus ful...
Q58413    110 LCIELTKENIEKMRRQIKSLGISIDWDKEYIT-MTPEYIKKSQTAFVRMYKDGLIYRGKFPVNWCPRCqtAIAFAEVeyk 188  Methanocaldococcu...
O58052    108 KCVEWTWQAIEAMRKQFIRIGYSADWDLEYHT-MDDWYKAAVQRSLLEFYKKGLIYREEHPVYWCPKCrtSLAKAEVgyv 186  Pyrococcus horiko...
NP_393519 107 LCKEISESSEKSLLEGWKRIGMSCYFKDYYVT-SSPESIRISQSMFLDLVRKGRVYRDLAPSIRCPTCktSISQIEMkdq 185  Thermoplasma acid...
NP_342389 151 KCIEWTEEMIKKMKEAMIRLGYRPEWERFEYKtYEPKYRKIIQKSLIDMYKMNLIEMREGPVIWCPKCetALAQSEVgyl 230  Sulfolobus solfat...
NP_281122 112 MCIDWTEDRIDEMKATMQELGFSQDWDSEYRT-MDPEYWGKTQESFSEMADAGMVYRDEHPVNWCPRCetAIADAEVeni 190  Halobacterium sp....
Feature 1                                                                                     
1GAX_A    192 ptpgklytlryevegggfieiatvrpetvfadqaiavhpederyrhllgkraripltevwipiladpavekdfgt--gal 269  Thermus thermophilus
Q9Z987    197 ekdgwlyyiryrmvgsqesivvattrpetslgdtgiavspnderyaswigasvevpfvnrqipiigdasvdptf---gtg 273  Chlamydophila pne...
P56000    199 erkgalyyiryylenqkdylvvattrpetlfgdsalmvnpnderykhlvgqkailplihrtipiiadehvemef---gtg 275  Helicobacter pylori
P47576    195 pvnqhlhyvvyklandskqelivattrpetifadvcllvnpkdkrytnfwnklvvnpltgkqipvvtdsyvdikf--gtg 272  Mycoplasma genita...
O28059    189 qgktklnyikfdddviiattrpelipacvaiavhpddernkhligkkvrvpttpyeveviadeevdpefgtg-------- 260  Archaeoglobus ful...
Q58413    189 eresklnyikfpaadgeghlliattrpelmaacvailvhpederykhligkefivplfghkvklladedvekef---gtg 265  Methanocaldococcu...
O58052    187 eeegylyyiklpladgsgyipiattrpelmpacvavfvhpdderykhlvgkkvklpiferevpiladedvdpnfgtgavy 266  Pyrococcus horiko...
NP_393519 186 emhtklvyinfsvgdrpltiattrpemlgscvavfvnpddaryrdligkeatvpifgnhvrimadasvdmnfg-----tg 260  Thermoplasma acid...
NP_342389 231 ekegilayikfplkeggeiviattrpellaatqaiavnpmderyknlvgkialvpifnievkiisdadvekefgt-gavm 309  Sulfolobus solfat...
NP_281122 191 dregtlhyvtfdgvdngdieiattrpellaacvgivvspdddryadrigdtfevplfgqdvelladddvdadfg----sg 266  Halobacterium sp....
Feature 1                                                                                     
1GAX_A    270 kvtpahdpldyeigerhglkpvsvinlegrmegervpealrgldrfearrkavelfreaghlvkeedytialatCSRCGT 349  Thermus thermophilus
Q9Z987    274 avkvtpahdkddylmgtnhhlpminiltpsgginenggpfagmakekareeilialeeqglfvrkepyklrvgvSYRSGA 353  Chlamydophila pne...
P56000    276 cvkvtpghdfndyevgkrhhletikifdekgilnahcgefenlerleardkvverlkenallekieehthqvghCYRCHN 355  Helicobacter pylori
P47576    273 ilkctpahdfndyeintkykfdflscidsngilnqnaskfqglsvlqarnkivkwleknkllvksipltsnvgfSERSGT 352  Mycoplasma genita...
O28059    261 vvmictfgdrqdvkwwkkhklelrnivgrdgrlnekagryagmtipeareailedlkkegkllkqveidhnvgtCWRCKT 340  Archaeoglobus ful...
Q58413    266 avmvctfgdktdvlwvnrhkleikkaidekgelteiagkykglkteearekiiedlkkegylvkqepikqnvgvCWRCKT 345  Methanocaldococcu...
O58052    267 nctygdeqdivwqkrynlpviivinedgtmnenagpyaglkieearkkiaedlekmgllykkekikhrvlrhteRSSCMA 346  Pyrococcus horiko...
NP_393519 261 aemvctfgdqndldlwkkynlplkisidkdgrmteeagplkglsisdarkkiveilregghvvkeesikhsvntHERCGT 340  Thermoplasma acid...
NP_342389 310 istygdpqdikwqlkynlpikvivdekgriintngildglkieqarnkmiellktkgylvkvekikhnvlshveRSDCLS 389  Sulfolobus solfat...
NP_281122 267 avmvctfgdkqdvewwmdhdldlrtvftedghlneaagefaglaiddaktqvaeelddqgylndtepteqsvgsCWRCDT 346  Halobacterium sp....
Feature 1                                                                                     
1GAX_A    350 PIEYAIFPQWWLRMrpLAEEVLKGLRrgdIAFVPERWKKVNMDWLEn-VKDWNISRQLWWGHQIPAWYCEd-cQAVNVpr 427  Thermus thermophilus
Q9Z987    354 VIEPYLSKQWFVSVseFRGALREFVEsqdIKIFPKDFVKNYLSWVNh-LRDWCISRQLWWGHRIPVWYHKn--DDERVlc 430  Chlamydophila pne...
P56000    356 VVEPYVSKQWFVKPe-IAQSSIEKIQqglARFYPSNWINNYNAWMRe-LRPWCISRQLFWGHQIPVFTCEn--NHQFVsl 431  Helicobacter pylori
P47576    353 VVEPMLSKQWFVDLp-KLKDHLYLKKy--PDFIPKRFNKQVSNWLNk-LKPWCISRQLIWGHKIPVWFENn--TGEIVvg 426  Mycoplasma genita...
O28059    341 PVEIIPAEQWFVKV--EKEKILEAAKr--IKWVPEHMYSRLESWVQsmEWDWVISRQRIFATPIPAWYCKn-cGEVVVak 415  Archaeoglobus ful...
Q58413    346 PIEIIVTEQWFVNVrkLIPKVREVADe--IKWIPEHMKIRLLNWIEdmDWDWVISRQRIFATPIPVWYCPk-cGNVVVak 422  Methanocaldococcu...
O58052    347 PIELLPKKQWFIKVkdLIDEIIKVAKe--INWYPEDMFLRLKDWAEsmDWDWVISRQRVFGTPFPFWVCKn--GHIIPar 422  Pyrococcus horiko...
NP_393519 341 PIEIFIEKQWFIKYldLKDAFIENGRk--IEWTPEYMRVRYENWVNglKWDWLISRQRYYGVPFPVWYCAdcgNTVYAde 418  Thermoplasma acid...
NP_342389 390 PVEFLVKKQIYIKVldKKQKLLEEYKk--MKFKPARMSYYLEDWIKsiEWDWNITRQRIYGTPLPFWYCEn--GHLVPak 465  Sulfolobus solfat...
NP_281122 347 AIEILSKEQWFVEV--DQDRILDAAAd--AEWVPEHMHDRLVEWTEgmDWDWVISRQRVFATPIPAWECNe-cGHWEIag 421  Halobacterium sp....
Feature 1                                        #  #                                  ## ##  
1GAX_A    428 peryledpt-------sceacgsprlKRDEDVFDTWFSSALWPLSTLgwpeet-------edlkafYPGDVLVTGYDILF 493  Thermus thermophilus
Q9Z987    431 ydgegipe---------evaqdpdswYQDPDVLDTWFSSGLWPLTCLgwpdens------pdlkkfYPTALLVTGHDILF 495  Chlamydophila pne...
P56000    432 dtplsc------------ptcksetlEQDKDVLDTWFSSGLWAFSTLgwgqeksgl-fnesdlkdfYPNTTLITGFDILF 498  Helicobacter pylori
P47576    427 ekps----------------knlqnyTRSKDVLDTWFSSSLWPLICLnweq-----------ddsfHETELLVTGYDILF 479  Mycoplasma genita...
O28059    416 eewlpvdptatq-ppepcpkcgstefRGETDVLDTWMDSSITPLMICgwps------------lkeYPTHLRPQGHDIIR 482  Archaeoglobus ful...
Q58413    423 eedlpidptkt---gyvcdkcgnkdlIPETDVLDTWMDSSITPMVITkwlddd-------kffekhYPVQLRPQGHDIIR 492  Methanocaldococcu...
O58052    423 eedlpvdprfdk-ppvdkcpvcgaeiEPVTDVLDCWVDSSITPLIITkwheaikgdeeakkwfehnFPTALRPQGTDIIR 501  Pyrococcus horiko...
NP_393519 419 selpvdpriqk--pskkcdrcgstnlVPERDVMDTWATSSLTPRIALthfgl----------fdkyYPEDLRGQGHDIIS 486  Thermoplasma acid...
NP_342389 466 eedlpidpikts-pplekcplcgselKPVTDVADVWIDSSVTVLYLTkfyedk-------nvfnrtFPASLRLQGTDIIR 537  Sulfolobus solfat...
NP_281122 422 reqapvdpteddpaveacpecggddwAGETDVMDTWMDSSITPLHLSgwpegt--------tldefESVDLRPQGHDIIR 493  Halobacterium sp....
Feature 1      #                      ####                                         #          
1GAX_A    494 LWVSRMEVSGYHFMgeRPFKTVLLHGLVLDe----------------------------------kGQKMSKSKGNVIDP 539  Thermus thermophilus
Q9Z987    496 FWVTRMVLLCSSMSgeKPFSEVFLHGLIFGksykryndfgewsyisgkeklaydmgealpdgvvakWEKLSKSKGNVIDP 575  Chlamydophila pne...
P56000    499 FWVARMLFCSESLLgeLPFKDIYLHALVRDe----------------------------------kGEKMSKSKGNVIDP 544  Helicobacter pylori
P47576    480 FWVLRMLFNSFFETkkLPFKTVLIHGLVRDe----------------------------------qNRKMSKSLNNGIDP 525  Mycoplasma genita...
O28059    483 TWAFYTILRSLALEgqIPWYEIVINGMVFGe----------------------------------dGRKMSKSLGNVIVP 528  Archaeoglobus ful...
Q58413    493 TWAFYTIVKSVALTgkKPWDEIVINGMVFGe----------------------------------dGHKMSKSRGNVVEP 538  Methanocaldococcu...
O58052    502 TWAFYTILRTYVLTgkKPWKDIVINGMVAGp----------------------------------dGRKMSKSYGNVVSP 547  Pyrococcus horiko...
NP_393519 487 FWAFTTIARSKIHDdrIPWFRIMISGNVYDm----------------------------------yGEKMSKSKGNIVDI 532  Thermoplasma acid...
NP_342389 538 TWLFYTFFRTLMLAnnVPFTTVLVNGQVLGp----------------------------------dGTRMSKSKGNVVSP 583  Sulfolobus solfat...
NP_281122 494 TWAFYTLLRTGALTdeQPWDDVLVNGMVFGe----------------------------------dGNKMSKSRGNFVQP 539  Halobacterium sp....
Feature 1                                 
1GAX_A    540 LEMVERYGADALRFALIYLatgGQDIRL 567  Thermus thermophilus
Q9Z987    576 LEMIATYGTDAVRLTLCSCanrGEQIDL 603  Chlamydophila pneumoniae
P56000    545 LEMIEKYGADSLRFTLANLcatGRDIKL 572  Helicobacter pylori
P47576    526 VDLIRNYGADAVRLFLCSNhtpGDDLIF 553  Mycoplasma genitalium
O28059    529 EEVVEKYGVDALRQWAASGv-iGDDIIF 555  Archaeoglobus fulgidus
Q58413    539 DEIIAKYGADALRLWASNSv-vGDDVQF 565  Methanocaldococcus jannaschii
O58052    548 EEVIPKYGADALRLWTALAp-pGEDHPF 574  Pyrococcus horikoshii
NP_393519 533 YSMIDKYGADALRFWASTVs-qGDDIRI 559  Thermoplasma acidophilum DSM 1728
NP_342389 584 LDRVNDFGADAIRMALLDAs-iGDDFPF 610  Sulfolobus solfataricus P2
NP_281122 540 DEAIAEYSADAVRQALALGgrpGSDVQF 567  Halobacterium sp. NRC-1

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