1AE9


Conserved Protein Domain Family
INT_Lambda_C

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cd00800: INT_Lambda_C 
Click on image for an interactive view with Cn3D
C-terminal catalytic domain of Lambda integrase, a tyrosine-based site-specific recombinase
Lambda-type integrases catalyze site-specific integration and excision of temperate bacteriophages and other mobile genetic elements to and from the bacterial host chromosome. They are tyrosine-based site-specific recombinase and belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The phage lambda integrase can bridge two different and well-separated DNA sequences called arm- and core-sites. The C-terminal domain binds, cleaves and re-ligates DNA strands at the core-sites, while the N-terminal domain is largely responsible for high-affinity binding to the arm-type sites.
Statistics
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PSSM-Id: 271181
Aligned: 17 rows
Threshold Bit Score: 164.053
Created: 1-Mar-2013
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
active sitedimer interface
Conserved site includes 5 residues -Click on image for an interactive view with Cn3D
Feature 1:active site [active site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                     #                                               
1AE9_A      7 DEYLKIYQAAes---spCWLRLAMELAVVTGQRVGDLCEMKWSDIvdgYLYVEQsKTGVKIAIPTalhidalgisMKETL 83  Bacteriophage lambda
P75969    197 EEWKKIFDIAda---thRYMGNAMLLALVTGQRLGDISRMKFSDIwddHLHVIQeKTGSKIAIPLslrlnainwsLRDVV 273 Escherichia coli
NP_286846 171 EQYAAIYAEAi------PQLRIAMEISYLCAARLGDVLELKWQDImdkGIYIEQnKTGTKQIKEWsp-------rLRTAI 237 Escherichia coli O...
NP_108170 176 EQIKAFRAGAp------AHLLLAFEMALHTGQRQGDLLSRSWKDYdgiYLQFRQsKGGKKLKVRVhs-------kLKAML 242 Mesorhizobium loti
AET91054  182 SDFWAIFEKAe-----dRWLKNAMLLALLTGQRKNDVLRMKFEDAkdgYLWVDQqKTGAKIKIELtval--gahiLQNVI 254 Burkholderia sp. YI23
BAE50745  188 EDFRAIHAYAaan--maPRVARAMELALITGQRRDDLRNMGPKDIsdgYLWVVQsKGGARVSIPVgirlqvvnwsLSEVV 265 Magnetospirillum m...
EBA18363  163 PAVATFRKNVr------GLERLAFELALGTGQRASDLTRMKWSDIeddGIWVTQgKTGVRLWIPFtd-------sLRAIL 229 Roseobacter sp. SK...
AEJ02213  167 AELASFSEYAistgetgRLLAEVARLAYLTGQRRGDLLKLRLDQItddGILIIQgKTRAKVLIQWtv-------sLRDCV 239 Nitrosomonas sp. I...
ADL55536  161 SEIVAFLPHCp------EWLQAYIRLKLLTGLRQGDMLSIRLDQLredGLFVQTwKRGKKLLFSWsd-------nLRTIV 227 Gallionella ferrug...
AEM46625  165 AEFWAVHDCGs------KLIQIAMRLAWITGLRQGDILDLTYQDItdqGLMVLTaKTGKRLLFEWtp-------dLRGAI 231 Acidithiobacillus ...
Feature 1                                                                 #  #                
1AE9_A     84 DKCKEILg---GETIIAstr-------repLSSGTVSRYFMRARKASGlsfe--gdpPTFHELRSLSARLYEKQIsd-kF 150 Bacteriophage lambda
P75969    274 ARCRDYAv---SAYLVHffrstsqaergaqVKANTLTMNFSKARDLARidwg-egspATFHEQRSLSERLYKEQGl---D 346 Escherichia coli
NP_286846 238 QLARNVSsc-tCEYVINttk-------ggkVIAKTLNNWWNQAKRAAEqkvg-vpfgCNFHDIKAKGISDYEGSSr---D 305 Escherichia coli O...
NP_108170 243 DVLDKDK----MRILLNsrk--------rpWTKDGFKTSWGKECTRLQie------gVTFHDLRGTFITERAREGssveD 304 Mesorhizobium loti
AET91054  255 AQCRDKAv---SRYLIHfpaetyqhkrgakVGEGSLEVAFREARTKAEltypdgatpTTFHEIRSLAARLHAKARds-eF 330 Burkholderia sp. YI23
BAE50745  266 ANCRDAVl---SKHFLHhnaivgkarpgdpIRAQTISLEFAEARDKAGitgstgktpPTFHEIRSLAARLWTDERge-aF 341 Magnetospirillum m...
EBA18363  230 DETPRKS----LHWILSddf-------grqLGYDYIQKKFLKARKELGle------gYGFHGLRYSAAGELAEAGctdhQ 292 Roseobacter sp. SK...
AEJ02213  240 SKLRASPrpvqGMFLICtkk-------gqpYADAGFKSVWGNVMSAWCdlg---nerFTFHDLRAKAITRMIEDGr---N 306 Nitrosomonas sp. I...
ADL55536  228 ETIKSLRhrvtSLHLINsdrd------gtkLTTSGFKSAWARAMKRAIeags-ltetFAENDLRAKVATEARELGq---N 297 Gallionella ferrug...
AEM46625  232 DDARGLPrkvrGMHLLCtes-------ggrYTRTGFASMWKRTVQKAMdkgt-ltesFTFHDLRAKAGSDSQDDHllghA 303 Acidithiobacillus ...
Feature 1           #         #         
1AE9_A    151 AQHLLGHKSDTMAs-QFRDDRGREWD 175 Bacteriophage lambda
P75969    347 TQKLLGHKTQQQTd-RYHDDRGKGWS 371 Escherichia coli
NP_286846 306 KQIFSGHKTENQVl-IYDRKTKITPT 330 Escherichia coli O157:H7 EDL933
NP_108170 305 IAKISGHSISEIK--SVLEKHYLADD 328 Mesorhizobium loti
AET91054  331 AQALLGHSSAGMTe-LYKDVRGQQWV 355 Burkholderia sp. YI23
BAE50745  342 AKALLGHKSAEMAa-LYRDKRGDDWV 366 Magnetospirillum magneticum AMB-1
EBA18363  293 IAAITGHKSLSMIq-KYSKSANQKRL 317 Roseobacter sp. SK209-2-6
AEJ02213  307 ASNLSGHAGDAMInkVYDRRAVKKSK 332 Nitrosomonas sp. Is79A3
ADL55536  298 ATKILGHSSDAVTkrHYERGTSKVEP 323 Gallionella ferruginea ES-2
AEM46625  304 DQRMLNRVYKRKPa-HVTPVHLSNMP 328 Acidithiobacillus ferrivorans SS3

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