1BBU,1E24


Conserved Protein Domain Family
LysRS_core

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cd00775: LysRS_core 
Click on image for an interactive view with Cn3D
Lys_tRNA synthetase (LysRS) class II core domain. Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Statistics
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PSSM-Id: 238398
Aligned: 28 rows
Threshold Bit Score: 442.024
Created: 24-Sep-2002
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 10 residues -Click on image for an interactive view with Cn3D
Feature 1:active site [active site]
Evidence:
  • Structure:1E24_A; E.coli lysRS bound to lysine and ATP using 3.5 A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                     #               
1BBU_A    176 NDESRNTFKVRSQILSGIRQFMVNRGFMEVETPMMQVIPGGAaARPFITHHNalDLDMYLRIAPELYLKRLVVGGfERVF 255 Escherichia coli
1E24_A    176 NDKSRQTFVVRSKILAAIRQFMVARGFMEVETPMMQVIPGGAsARPFITHHNalDLDMYLRIAPELYLKRLVVGGfERVF 255 Escherichia coli
AAH47965  249 NDYVRQKFIVRAKLITYLRKFLDNLGFLEIETPMMNIIPGGAvAKPFITYHNdlDMKLYMRIAPELYHKMLVVGGiDRVY 328 African clawed frog
P37879    237 NDFVRQKFIVRAKIITYIRSFLDELGFLEIETPMMNIIPGGAvAKPFITYHNelDMNLYMRIAPELYHKMLVVGGiDRVY 316 long-tailed hamster
NP_595892 241 NRSTRDRFVMRSRIIQYIRHFFDSRDFMEVETPMMNMIAGGAtAKPFVTHHNdlDMDLYMRIAPELYLKMLVVGGlDRVY 320 fission yeast
NP_727353 253 NNNVREKFQIRAKIISYVRQFLDRLGFLEIETPMMNMIAGGAtAKPFVTHHNdlKMDLFMRIAPELYHKMLVVGGlDRVY 332 fruit fly
Q22099    216 NPRVKDNFVIRSKIITFLRRYLDNLGFLEVETPIMNQIAGGAtAKPFITHHNdlDMNLFLRVAPELYHKMLVVGGiDRVY 295 Caenorhabditis ele...
P15180    240 NKDARNRFITRSEIIRYIRRFLDQRKFIEVETPMMNVIAGGAtAKPFITHHNdlDMDMYMRIAPELFLKQLVVGGlDRVY 319 baker's yeast
NP_584742 100 NRESRNRFQKRAQIIGYIRSFLDSRGFLEVETPMMNLIPGGAaAKPFITHHNelKLDLYMRVSPELYLKKLVVGGlERVY 179 Encephalitozoon cu...
NP_705386 244 NESSRHTFVTRTKIINFLRNFLNERGFFEVETPMMNLIAGGAnARPFITHHNdlDLDLYLRIATELPLKMLIVGGiDKVY 323 Plasmodium falcipa...
Feature 1           # #     #   #                                                             
1BBU_A    256 EINRNFRNEGISVRHNPEFTMMELYMAYadYKDLIELTESLFRTLAQDIlg---------kTEVTYGDVTLDFGKPFEKL 326 Escherichia coli
1E24_A    256 EINRNFRNEGISVRHNPEFTMMELYMAYadYHDLIELTESLFRTLAQEVlg---------tTKVTYGEHVFDFGKPFEKL 326 Escherichia coli
AAH47965  329 EIGRQFRNEGIDLTHNPEFTTCEFYMAYadYNDLMEITEKLLSGMVKHItggyk--vpyhpEGPEGPEYEIDFTPPFRRI 406 African clawed frog
P37879    317 EIGRQFRNEGIDLTHNPEFTTCEFYMAYadYHDLMEITEKMLSGMVKSItgsyk--ityhpDGPEGEAYEIDFTPPFRRI 394 long-tailed hamster
NP_595892 321 EIGRQFRNEGADLTHNPEFTSIEFYQAYadYYDLMDTTEELLSGLVKDLtgsyk--vpyhpEGPEGPKWELDFSRPWRRI 398 fission yeast
NP_727353 333 EIGRQFRNEGIDLTHNPEFTTCEFYMAYadYADIMDITEQLVSGMVKAIrgsyk--viyhpEGPEGPEQELDFTPPFKRV 410 fruit fly
Q22099    296 EVGRLFRNEGIDLTHNPEFTTCEFYMAYadYEDVIQLTEDLLSSMVMSIkgtyki-eyhpnGPNTEPVYEVDFTPPFKRV 374 Caenorhabditis ele...
P15180    320 EIGRQFRNEGIDMTHNPEFTTCEFYQAYadVYDLMDMTELMFSEMVKEItgsyii-kyhpdPADPAKELELNFSRPWKRI 398 baker's yeast
NP_584742 180 EIGKQFRNEGIDLTHNPEFTSCEFYMAYadYNDLMEMTEELISGMVENMfgtdtivyspkkREERTESVELSFKRPFRVI 259 Encephalitozoon cu...
NP_705386 324 EIGKVFRNEGIDNTHNPEFTSCEFYWAYadYNDLIKWSEDFFSQLVYHLfgtyk--isynkDGPENQPIEIDFTPPYPKV 401 Plasmodium falcipa...
Feature 1                                                                                     
1BBU_A    327 TMREAIKKYRpetdm------adldnFDSAKAIAESigihvek------swglgrIVTEIFEEVAEAHLI-QPTFITEYP 393 Escherichia coli
1E24_A    327 TMREAIKKYRpetdm------adldnFDAAKALAESigitvek------swglgrIVTEIFDEVAEAHLI-QPTFITEYP 393 Escherichia coli
AAH47965  407 SMVHELEKALgkklpp----tdqfetEETRKLLDDIcvekevec---paprttarLLDKLVGDFLEVTCI-NPTFICDHP 478 African clawed frog
P37879    395 SMVEELEKALgvklpe----tslfetEETRKILDDIcvakavec---ppprttarLLDKLVGEFLEVTCI-NPTFICDHP 466 long-tailed hamster
NP_595892 399 NMIEYLEEKLntkfpp----gdqlhtPEANAFLRDLcakhgvec---appqtcsrLLDKLVGEFIESECI-NPTFIIGHP 470 fission yeast
NP_727353 411 SMIKTLEEKLqvkfpa----adtfnsPETNQFLSQLcakhqvec---paprttarLLDKLVGEFIEEFCV-NPTFICEHP 482 fruit fly
Q22099    375 HMYDGLAEKLgatlpd----pstlhtEEAREVFDKLcrdnnvdc---saprttarLLDKLVGEYLESTFI-SPTFLIGHP 446 Caenorhabditis ele...
P15180    399 NMIEELEKVFnvkfpsgdqlhtaetgEFLKKILVDNklecpp--------pltnaRMLDKLVGELEDTCI-NPTFIFGHP 469 baker's yeast
NP_584742 260 SILEELNARLgldlsg----etldreETLEKLLSACdkeglsve----kprtlsrVLDKLIGHVIEPQCV-NPTFVKDHP 330 Encephalitozoon cu...
NP_705386 402 SIVEEIEKVTntil---------eqpFDSNETIEKMiniikehkielpnpptaakLLDQLASHFIENKYNdKPFFIVEHP 472 Plasmodium falcipa...
Feature 1                         #      #  #   #                                             
1BBU_A    394 AeVSPLARRNDVnpeITDRFEFFIGGREIGNGFSELNDAEDQAQRFLDQVAAKDAGddeamfyDEDYVTALEHGLPPTAG 473 Escherichia coli
1E24_A    394 AeVSPLARRNDVnpeITDRFEFFIGGREIGNGFSELNDAEDQAERFQEQVNAKAAGddeamfyDEDYVTALEYGLPPTAG 473 Escherichia coli
AAH47965  479 QiMSPLAKWHRSekgLTERFELFVMKKEICNAYTELNDPFRQRELFEDQAKAKAAGddeamfiDETFCTALEYGLPPTAG 558 African clawed frog
P37879    467 QiMSPLAKWHRSkegLTERFELFVMKKEICNAYTELNDPMRQRQLFEEQAKAKAAGddeamfiDENFCTALEYGLPPTAG 546 long-tailed hamster
NP_595892 471 QmMSPLAKYHRSdagLCERFEAFVATKEICNAYTELNDIFDQRARFEEQARQKAQGddeaqiiDENFCTALEYGLPPTGG 550 fission yeast
NP_727353 483 QiMSPLAKYHRSipgLTERFELFVAKKEICNAYTELNDPVVQRERFEQQASDKAAGddeaqlvDENFCTSLEYGLPPTGG 562 fruit fly
Q22099    447 QiMSPLAKWHRSipgLTERFELFAVTREIANAYTELNDPITQRQRFEQQAKDKDAGddeaqmiDETFCNALEYGLPPTGG 526 Caenorhabditis ele...
P15180    470 QmMSPLAKYSRDqpgLCERFEVFVATKEICNAYTELNDPFDQRARFEEQARQKDQGddeaqlvDETFCNALEYGLPPTGG 549 baker's yeast
NP_584742 331 IaMSPLAKNHRSkagLTERFELFINCKEICNAYTELNNPFEQRERFLQQTQDLNAGddeammnDEDFCTALEYGLPPTGG 410 Encephalitozoon cu...
NP_705386 473 QiMSPLAKYHRTkpgLTERLEMFICGKEVLNAYTELNDPFKQKECFKLQQKDREKGdteaaqlDSAFCTSLEYGLPPTGG 552 Plasmodium falcipa...
Feature 1           #                      
1BBU_A    474 LGIGIDRMVMLFTNshTIRDVILFPAMRP 502 Escherichia coli
1E24_A    474 LGIGIDRMIMLFTNshTIRDVILFPAMRP 502 Escherichia coli
AAH47965  559 WGMGIDRVAMFLTDsnNIKEVLLFPAMKP 587 African clawed frog
P37879    547 WGMGIDRVTMFLTDsnNIKEVLLFPAMKP 575 long-tailed hamster
NP_595892 551 WGMGVDRLVMFLTDsnTIREVLLFPHMKP 579 fission yeast
NP_727353 563 FGMGIDRLAMFLTDsnNIKEVLLFPAMKP 591 fruit fly
Q22099    527 WGMGIDRLSMILTDnnNIKEVLLFPAMRP 555 Caenorhabditis elegans
P15180    550 WGCGIDRLAMFLTDsnTIREVLLFPTLKP 578 baker's yeast
NP_584742 411 WGIGIDRLVMYLTDaaNIRDVIFFPTMKP 439 Encephalitozoon cuniculi
NP_705386 553 LGLGIDRITMFLTNknSIKDVILFPTMRP 581 Plasmodium falciparum 3D7

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