1JJC


Conserved Protein Domain Family
PheRS_beta_core

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cd00769: PheRS_beta_core 
Click on image for an interactive view with Cn3D
Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer. While the alpha chain contains a catalytic core domain, the beta chain has a non-catalytic core domain.
Statistics
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PSSM-Id: 238392
Aligned: 70 rows
Threshold Bit Score: 132.382
Created: 6-Mar-2002
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
dimer interfacemotif 1motif 2motif 3
Conserved site includes 21 residues -Click on image for an interactive view with Cn3D
Feature 1:dimer interface [polypeptide binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1         ##      #  #    # # ###                          ####          #             #
1JJC_B      490 APYRKEQRLREVLSGl-gFQEVYTYsFMDpedarrf---------rldpprLLLLNPlapekAALRTHLFPGLVRVLKEN 559 Thermus thermoph...
O83059      415 DLTLLTRKIKHLLVGf-gYQEMIFHyLGSarefctrm-------rctaddlIEIENPltesyRFVRRSIIPCLLSAELKS 486 Treponema pallidum
P95960      356 YLTLLERKMRELSIGa-gFVEVFNFvLIKnekil-------------dskyVKILNPiseeyNAVRNSLIPILLDFLSKN 421 Sulfolobus solfa...
P75563      502 NAYDALQKLRTKLQTl-gFHNVITYqLISperarnfn-------lfglsnlWEIKNPlsnerSVLRVGLIDSLLRVIQKN 573 Mycoplasma pneum...
ZP_00001147  71 TPNEDENIIKGILTSi-nYQEVRSFiLNSedfyrk----------tgysgdVIITNPksleySVIRDKLYPGIISLLAIN 139 Ferroplasma acid...
P57694      357 FMNKVKDLARDTMIGl-gFQEVMTFvLSPasylq------------eytggVRIQNPksedySVIRDKIYPDLLDLIARN 423 Thermoplasma aci...
NP_853144   502 ETNELLDRLSKKLRSl-kFNHIRTYnLTSkkraelln-------lfkyqdpVVVSKPisetrQYYRQNILTNLLEVYQLN 573 Mycoplasma galli...
AAF97193    332 SDEHLRRRIRTSLQGm-sFMQIQSLtLSNefdqferm------rwtptneiTQITNPitqehTMMRQFLLPGLLRLLATN 404 uncultured marin...
NP_714215   498 LNRELERKCKTFFAIalkYHEVFNYsFQSykenefs---------gdpklsVKIKNEmpeeqSVLRNSLLPSLLKNTRTN 568 Leptospira inter...
Q9HMK3      372 ESSRLERSVRQALVGl-gFEDLLNFnMTSeaenfdrmrltpdhdavgaaqpATIAEPysqdfTILRTWALPSLAMVLETN 450 Halobacterium sp...
Feature 1                 #    # # #         #                                #                 
1JJC_B      560 LDldrperALLFEVGRVFREr--------EETHLAGLLFGegvglpw--akerlsgYFLLKGYLEALFARLg---LAFRV 626 Thermus thermoph...
O83059      487 AHal--ypHRIFEIGKVAFCsphgehgtcTQQSLGFLNASqe------------asYNEVASLVSGLLYCLk---LPYQV 549 Treponema pallidum
P95960      422 QHak--fpIRIFETGDVVIYdsstdtgfrNDKRAAYAIMDnk------------vsYEDVQAPIHYILKTLg---IEVNY 484 Sulfolobus solfa...
P75563      574 AAykn-klGNIFEFSFVKTKd-------sNQLHIAALWLEkmfgstyqkdqgvsvdIPAMKGLAQLIISNFg---FNCDF 642 Mycoplasma pneum...
ZP_00001147 140 KRrk--lpLKIFEIGQVVVSg-------nQESHLCVLYNNsk------------aaYSDIYAVLEYLLARTi--nAGAKV 196 Ferroplasma acid...
P57694      424 KKhs--lpQRIFEIGDKIVGg-------kQRTALSCVIADtr------------seFSTAKSYMQGFLARFt--sENPVI 480 Thermoplasma aci...
NP_853144   574 RSykn-klYPIFEIQSLLTKn-------gANHHIGLVMANnlfnhsydpssgikldLITIKGISDIIVQNFg---FNCNY 642 Mycoplasma galli...
AAF97193    405 RHhd--lpQSVYELGTVVRDh-------kNMERLAFITAErs------------ggFAAIRGRIQAFLRDMg--aDEVVI 461 uncultured marin...
NP_714215   569 QDrf--seIKIFEFGRVYFNlpe----peNEKKIFAFAVSldkkssepdlklleedFLKIKKEVESFLESIqiyeYTWKI 642 Leptospira inter...
Q9HMK3      451 THha--ypQDLAEVGFAAHAdgdtqtgvaERRTVAAVLARnd------------asYEDAKARLQALCDEFav-aLETPP 515 Halobacterium sp...
Feature 1                                                                     
1JJC_B      627 EAQAfp--flHPGVSGRVLVE------GEEVGFLGALHPEIAQELEL--PPVHLFELRLPLP 678 Thermus thermophilus
O83059      550 EEAQdp--rfVLGRQASICVH------GSRVGIFGEIHPQVLSNWDIr-MPCFAGELDVGAL 602 Treponema pallidum
P95960      485 KEENnd--ifIEGRSASIVYE------NEKIGVIGEINPDVLIRFGIe-YPTVIAELYITEI 537 Sulfolobus solfataricus
P75563      643 EPITege-yfTKNVGLKLVVF------NEQIGYVGLIKDELLAPYDLkgRPVYGLEINLDRL 697 Mycoplasma pneumoniae
ZP_00001147 197 LQGNyn--eiISGRGGDIVYE------NTTLGIIGEMDPSILVDFGIq-NPVAFMEINLDKL 249 Ferroplasma acidarmanus
P57694      481 VPQMiy--gsIDGRSGSIKIG------EKIIGVIGEIHPAFLERFSLa-VPVSFFEIDLDEI 533 Thermoplasma acidophilum
NP_853144   643 QTINddt-ylVKNDSLKLVVY------DETIGYIGKIKKSILKEFDLadQDIYCLDINLERL 697 Mycoplasma gallisepticum R
AAF97193    462 EPLPdnegpwLAGRAAKVLIK------GEWVGCFGEIDPAIGQTFELl-VPMNAAEFDVDGL 516 uncultured marine group II euryarc...
NP_714215   643 QQETi----fHPGANLCLVARsgkdglETIVGNLGYVHPAILDSFELk-KRVIYGSFEFERI 699 Leptospira interrogans serovar lai...
Q9HMK3      516 TTHPs----fIDGRAATIEID------GQPAGVIGELHPGVIVEHDVe-VPVAGFEFELDAL 566 Halobacterium sp. NRC-1

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