1SER,1J5W,1EIY,1E24,1JJC,12AS,1KMM,1KOG,1BBU,1SES,1B8A,1IL2,1JJC,1H4S,1GGM


Conserved Protein Domain Family
class_II_aaRS-like_core

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cd00768: class_II_aaRS-like_core 
Click on image for an interactive view with Cn3D
Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ.
Statistics
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PSSM-Id: 238391
Aligned: 17 rows
Threshold Bit Score: 96.0326
Created: 6-Mar-2002
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 16 residues -Click on image for an interactive view with Cn3D
Feature 1:active site
Evidence:
  • Structure:1KOG_A; E. Coli ThrRS bound to the essential domain of its mRNA operator
  • Structure:1JCC_A: binds Phe-AMP, defined using 4.5 A contacts

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                     
1SER_A    168 YELALLRFAmDFMar--rgFLPMTlpsyarekaflgtghf-------------------------payrdqvwaiaetdl 220 Thermus thermophilus
1J5W_A     14 YLQDVIXKLnDFWas--kgCLLEQpy-----------------------------------------------------d 38  Thermotoga maritima
1EIY_A    102 PITLMERELvEIFra--lgYQAVEgpeveseffnfdalnipehhpardmw------dtfwltgegfrlegplgeevegrl 173 Thermus thermophilus
1JJC_A    102 PITLMERELvEIFra--lgYQAVEgpeveseffnfdalnipehhpardmw------dtfwltgegfrlegplgeevegrl 173 Thermus thermophilus
12AS_A     11 QISFVKSHFsRQLeer-lgLIEVQapilsrvgdgtqdnlsga----------------------ekavqvkvkalpdaqf 67  Escherichia coli
1KOG_A     32 IFRELEVFVrSKLke--yqYQEVKgpfmmdrvlwektghwd-----------------------nykdamfttssenrey 86  Escherichia coli
1SES_A    168 YELALLRFAmDFMar--rgFLPMTlpsyarekaflgtghf-------------------------payrdqvwaiaetdl 220 Thermus thermophilus
1JJC_B    490 APYRKEQRLrEVLsg--lgFQEVYtysfmdpedarrfrld-------------------------pprllllnplapeka 542 Thermus thermophilus
1H4S_A     46 IWENIQQVLdRMFke--tgHQNAYfplfipmsflrkeaehvegf-----------------spelavvthaggeeleepl 106 Thermus thermophilus
1GGM_A     41 LKNNLKQAWwRRNvyerddMEGLDasvlthrlvlhysgheatfadpmvdnakarywtppryfnmmfqdlrgprggrglla 120 Thermus thermophilus
Feature 1         # #                             #                  # # ###                  
1SER_A    221 yLTGTAEVVLNALhsgeilp-yealplRYAGYAPAFRSeagsfgkdvrglmrvhQFHKVEQYVLTeasleas----draf 295 Thermus thermophilus
1J5W_A     39 xEVGAGTFHPATFfgslr-----kgpwKVAYVQPSRRPtdgryge---npnrlqRYFQYQVIIKPsp------------- 97  Thermotoga maritima
1EIY_A    174 lLRTHTSPMQVRYmvah------tppfRIVVPGRVFRFeqtda-------theaVFHQLEGLVVGegia----------m 230 Thermus thermophilus
1JJC_A    174 lLRTHTSPMQVRYmvah------tppfRIVVPGRVFRFeqtda-------theaVFHQLEGLVVGegia----------m 230 Thermus thermophilus
12AS_A     68 eVVHSLAKWKRQTlgqhd----fsageGLYTHMKALRPdedrls-----plhsvYVDQWDWERVMgdgerq-----fstl 133 Escherichia coli
1KOG_A     87 cIKPMNCPGHVQIfnqglks-yrdlplRMAEFGSCHRNepsgslh---glmrvrGFTQDDAHIFCteeqir------dev 156 Escherichia coli
1SES_A    221 yLTGTAEVVLNALhsgeilp-yealplRYAGYAPAFRSeagsfgkdvrglmrvhQFHKVEQYVLTeasleas----draf 295 Thermus thermophilus
1JJC_B    543 aLRTHLFPGLVRVlkenldl-drperaLLFEVGRVFREr---------------EETHLAGLLFGegvglpwakerlsgy 606 Thermus thermophilus
1H4S_A    107 aVRPTSETVIGYMwskwirs-wrdlpqLLNQWGNVVRWemrtrp-----flrtsEFLWQEGHTAHatreea-----eeev 175 Thermus thermophilus
1GGM_A    121 yLRPETAQGIFVNfknvldatsrklgfGIAQIGKAFRNeitprn----fifrvrEFEQMEIEYFVrpgede------ywh 190 Thermus thermophilus
Feature 1                                                                                     
1SER_A    296 qeLLENAEEILRlle--------------------------------------------lpYRLVEVATgdmg------- 324 Thermus thermophilus
1J5W_A     98 enSQELYLESLEylgin---------------------------------------lkehdIRFVEDNWesptl------ 132 Thermotoga maritima
1EIY_A    231 ahLKGAIYELAQalfg------------------------------------------pdsKVRFQPVYfpf-------- 260 Thermus thermophilus
1JJC_A    231 ahLKGAIYELAQalfg------------------------------------------pdsKVRFQPVYfpf-------- 260 Thermus thermophilus
12AS_A    134 ksTVEAIWAGIKateaavseefglapflpdqihfvhsqellsrypdldakgreraiakdlgAVFLVGIGgklsdghrhdv 213 Escherichia coli
1KOG_A    157 ngCIRLVYDMYStfg-------------------------------------------fekIVVKLSTRpekrigsdemw 193 Escherichia coli
1SES_A    296 qeLLENAEEILRlle--------------------------------------------lpYRLVEVATgdmg------- 324 Thermus thermophilus
1JJC_B    607 flLKGYLEALFArl---------------------------------------------glAFRVEAQAfpfl------- 634 Thermus thermophilus
1H4S_A    176 rrMLSIYARLAReya-------------------------------------------aipVIEGLKTEkekf------- 205 Thermus thermophilus
1GGM_A    191 ryWVEERLKWWQemgl-----------------------------------------srenLVPYQQPPessa------- 222 Thermus thermophilus
Feature 1                                                  ##   #                             
1SER_A    325 -------------------------pgkwRQVDIEVylpsegryRETHSCSALLdwqarranlr---------------- 363 Thermus thermophilus
1J5W_A    133 -------------------------gawgVGWEVWLd------gXEITQFTYFQqigg---------------------- 159 Thermotoga maritima
1EIY_A    261 ---------------------------vePGAQFAVwwpeggkwLELGGAGMVHpkvfqavdayr--------------- 298 Thermus thermophilus
1JJC_A    261 ---------------------------vePGAQFAVwwpeggkwLELGGAGMVHpkvfqavdayr--------------- 298 Thermus thermophilus
12AS_A    214 rapd-----------yddwstpselghagLNGDILVwnpvledaFELSSMGIRVdadtlkhqlaltgded---------- 272 Escherichia coli
1KOG_A    194 draeadlavaleennipfeyqlgegafygPKIEFTLydcl-draWQCGTVQLDFslpsrlsasy---------------- 256 Escherichia coli
1SES_A    325 -------------------------pgkwRQVDIEVylpsegryRETHSCSALLdwqarranlr---------------- 363 Thermus thermophilus
1JJC_B    635 --------------------------hpgVSGRVLVe------gEEVGFLGALHpeiaq--------------------- 661 Thermus thermophilus
1H4S_A    206 -------------------------agavYTTTIEAlmkd-gkaLQAGTSHYLGenfarafdik---------------- 243 Thermus thermophilus
1GGM_A    223 -------------------------hyakATVDILYrfp--hgsLELEGIAQRTdfdlgshtkdqealgitarvlrnehs 275 Thermus thermophilus
Feature 1                         ##   ##  # 
1SER_A    364 ------yrdpegrvryAYTLNNTa-LAtpRI 387 Thermus thermophilus
1J5W_A    160 ------------islkDIPLEIT--YGleRI 176 Thermotoga maritima
1EIY_A    299 -----erlglppayrgVTGFAFG--LGveRL 322 Thermus thermophilus
1JJC_A    299 -----erlglppayrgVTGFAFG--LGveRL 322 Thermus thermophilus
12AS_A    273 -rlelewhqallrgemPQTIGGG--IGqsRL 300 Escherichia coli
1KOG_A    257 -------vgednerkvPVMIHRAilGSmeRF 280 Escherichia coli
1SES_A    364 ------yrdpegrvryAYTLNNTa-LAtpRI 387 Thermus thermophilus
1JJC_B    662 ------------elelPPVHLFE--LRlpLP 678 Thermus thermophilus
1H4S_A    244 ------fqdrdlqvkyVHTTSWG--LSw-RF 265 Thermus thermophilus
1GGM_A    276 tqrlayrdpetgkwfvPYVIEPS--AGvdRG 304 Thermus thermophilus

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