1J5W


Conserved Protein Domain Family
GlyRS_alpha_core

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cd00733: GlyRS_alpha_core 
Click on image for an interactive view with Cn3D
Class II Glycyl-tRNA synthetase (GlyRS) alpha subunit core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes and in arabidopsis. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. This alignment contains only sequences from the GlyRS form which heterotetramerizes. The homodimer form of GlyRS is in a different family of class II aaRS. Class II assignment is based upon structure and the presence of three characteristic sequence motifs.
Statistics
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PSSM-Id: 238375
Aligned: 14 rows
Threshold Bit Score: 513.817
Created: 24-Sep-2002
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 17 residues -Click on image for an interactive view with Cn3D
Feature 1:active site [active site]
Evidence:
  • Comment:based on conservation within class II aaRS's

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                     # #                        #               # # ### 
1J5W_A        14 YLQDVIXKLNDFWASKGCLLEQPYDXEVGAGTFHPATFFGSLRKGPWKVAYVQPSRRPTDGRYGENPNRLQRYFQYQVII 93   Thermotoga mar...
Q46371         7 TLQTMMAAILNFWSEQGCIIHQGYDLEVGAGTFNPATFLQSLGPEPFRTAYIEPSRRPQDGRYGQHPNRLQKYHQLQVIL 86   Chlamydia trac...
BAC22223      73 TFQQAIQRLQDYWASVGCAVMQCSNTEVGAGTMNPLTFLRVLGPEPWNVAYVEPSIRPDDSRYGDNPNRLQRHTQFQVIL 152  Japanese rice
O67081         2 YFQDIIMTLHKFWAEKGCLIWQPYDVEVGAGTMNPATFLKVLGKKPWNVAYVEPSRRPQDGRYGENPNRLQHYYQFQVIL 81   Aquifex aeolicus
Q9JRC6         3 TFQQIIFKLQTFWADKGCTVIQPFDMEVGAGTSHPATCLRALGPEPWFAAYVQPSRRPKDGRYGDNPNRLQHYYQFQVAL 82   Neisseria meni...
P00960         8 TFQGLILTLQDYWARQGCTIVQPLDMEVGAGTSHPMTCLRELGPEPMAAAYVQPSRRPTDGRYGENPNRLQHYYQFQVVI 87   Escherichia coli
Q55716         4 TFQAVIAKLNEFWAQQGCLIAQPFDTEKGAGTMNPHTFLRAIGPEPWSVAYVEPCRRPTDGRYGENPNRVQHYFQYQVLI 83   Synechocystis ...
Q89AV6        15 TFYEIICTLEKYWHNQNCTIIEPLDISVGAGTFHNKTFFGTIGSKPISMAYVQSSRRPSDGRYGKNPNRLQHYYQFQVII 94   Buchnera aphid...
NP_789201      7 RMQDTILILQTYWAHRGCLVFQPMNTEVGAGTANPATLLGVLGDKTWGVAYVEPCVRPDDSRYGINPSRLQCHTQFQVLL 86   Tropheryma whi...
ZP_00099648    2 KFQDMILSLNQFWGEQGCIIAQPYDMEKGAGTFNPNTFLRALGPEPWKVAYIEPSRRPTDGRYGENPNRLQHYFQYQVII 81   Desulfitobacte...
Feature 1                                                             ##   #               ## ## 
1J5W_A        94 KPSPENSQELYLESLEYLGINlkeHDIRFVEDNWESPTLGAWGVGWEVWLDGXEITQFTYFQQIGGISLKDIPLEITYGL 173  Thermotoga mar...
Q46371        87 KPVPENFLSLYLESLKVIGLNlvdHDIRFVHDDWENPTIGAWGLGWEVWLNGMEITQLTYFQAVGSKPLDAISGEITYGV 166  Chlamydia trac...
BAC22223     153 KPDPGNSQDLFLHSLSALGINvreHDIRFVEDNWESPVLGAWGLGWEVWMDGMEITQFTYFQQSGSLPLLPVSVEITYGL 232  Japanese rice
O67081        82 KPAPRNPQEIYLESLERLGINpleHDIRFVEDDWESPTLGAWGLGWEVWLDGMEITQFTYFQQAGGLDLDEISVEITYGL 161  Aquifex aeolicus
Q9JRC6        83 KPAPANIQDLYLDSLRELGIDpkvHDIRFVEDDWENPTLGAWGLGWEVWLNGMEVTQFTYFQQVGGIDCTPVLGEITYGI 162  Neisseria meni...
P00960        88 KPSPDNIQELYLGSLKELGMDptiHDIRFVEDNWENPTLGAWGLGWEVWLNGMEVTQFTYFQQVGGLECKPVTGEITYGL 167  Escherichia coli
Q55716        84 KPSPDNIQEVYLDSLRALGIQpedHDIRFVEDNWESPTLGAWGVGWEVWLDGMEVTQFTYFQQCGGIDCRPVSIEITYGL 163  Synechocystis ...
Q89AV6        95 KPSPHNIQCLYLNSLKKLNIDcktNDIRFVEDNWENPTLGAWGQGWEVWLNGMEVTQFTYFQQVGGINCNPITTEITYGL 174  Buchnera aphid...
NP_789201     87 KPEPGNPQEMYLESLEAIGIDlkkHDIRFVEDNWESPALGAWGLGWEIWLDGLEITQFTYFQQVGGVPLKTSAVEITYGI 166  Tropheryma whi...
ZP_00099648   82 KPSPDNIQELYLQSLERLGVNpkeHDIRFVEDNWESPTLGAWGLGWEVWLDGMEVTQFTYFQQCGGIDCKPVCAEITYGL 161  Desulfitobacte...
Feature 1        ##                                                                              
1J5W_A       174 ERIAXYLQGVDNVYEVQWNE-----NVKYGDVFLENEREFSVFNFEEANVGLLFRHFDEYEKEFYRLVEKn---LYLPAY 245  Thermotoga mar...
Q46371       167 ERIAMYLQKKNSVYDVMWND-----SLTYGDITQYAEQAWSQYNFETANTTMWLKHFDDFSAEALATLDQg---LPLPAY 238  Chlamydia trac...
BAC22223     233 ERILMSLQGVDHFKNIQYTK-----GITYGELFLENEKEMSAYYLEHANVDNIQKHFDDFEEEARSLLSLw---LPIPAY 304  Japanese rice
O67081       162 ERIAMYIQDKDSVFDIEWKE-----GITYGEIFKRSEWEWSKYNFELADTDMLFQVYEMFEKESKRMVEEg---LIFPAY 233  Aquifex aeolicus
Q9JRC6       163 ERLAMYLQGVENVYDLVWAKtldgnTVTYGDVYHQNEVEQSTYNFEYSDADWLLRQFNDYEAQAKRLLAEenaaLALPAY 242  Neisseria meni...
P00960       168 ERLAMYIQGVDSVYDLVWSDgp-lgKTTYGDVFHQNEVEQSTYNFEYADVDFLFTCFEQYEKEAQQLLALen-pLPLPAY 245  Escherichia coli
Q55716       164 ERLAMYLQNVEAIDQIQWNE-----KLSYGDIFWQGEVEQCTYNFEASNPDLLFQLFALYEQEAGQLIERg---LALPSL 235  Synechocystis ...
Q89AV6       175 ERIAMHIQNKSNIYDVIWNQdmnnnIITYGDLFLNNEIEHSSYNFKYADSKLHFDLFEKHLQESNRIMKLfn-nLLFPAY 253  Buchnera aphid...
NP_789201    167 ERIMMALQKVSHFKDIEYSK-----NISYGELFAQNEREMSAYYLEKANIERNKQLFEIYSDEAKMLLRAg---LPLPAY 238  Tropheryma whi...
ZP_00099648  162 ERLAMYIQNKESVYDIEYVG-----DITYGDIYLQNEIDYSHYNFEAADVEALQTWFEMYEKEAIRIVEKg---LVLPAY 233  Desulfitobacte...
Feature 1                                                       
1J5W_A       246 DYILKCSHTFNLLDARGAISVSQRQTYVKRIQAXARKAARVFLEVQA 292  Thermotoga maritima
Q46371       239 DFVIKASHAFNMLDSRGVISVTERTRYIAKIRQLARAAADKYVAWRE 285  Chlamydia trachomatis
BAC22223     305 DHVLKASHAFNILDSRGFVGVTERARYFGRMRSLARQCAQLWVKTRE 351  Japanese rice
O67081       234 DYLLKCSHVFNILDARGAISVQERARYIRRMNNLAREIAKLYLQVFE 280  Aquifex aeolicus
Q9JRC6       243 ELVLKAGHTFNLLDARGAISVTERATYIGRIRALSRAVAQKYVESRE 289  Neisseria meningitidis serogroup B
P00960       246 ERILKAAHSFNLLDARKAISVTERQRYILRIRTLTKAVAEAYYASRE 292  Escherichia coli
Q55716       236 EYVLKCSHAFNLLDARGVIAVTERTRYIGRIRNLAREVAHIYLQQRE 282  Synechocystis sp. PCC 6803
Q89AV6       254 EHLIYSIHYFNLLDAKKKFSTTQRQTHILNIRNTSKMIATNYYKKQK 300  Buchnera aphidicola (Baizongia pistaciae)
NP_789201    239 TFVLKCSHVFNILDARGAISTAERAKAFSLMRTLTKEISATWVESRS 285  Tropheryma whipplei TW08/27
ZP_00099648  234 DYVLKCSHTFNLLDARGAISVTERTGYIARVRNLARLCAQAYVEQRE 280  Desulfitobacterium hafniense

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