1RYT


Conserved Protein Domain Family
rubredoxin_SM

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cd00729: rubredoxin_SM 
Click on image for an interactive view with Cn3D
Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Statistics
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PSSM-Id: 238371
Aligned: 36 rows
Threshold Bit Score: 53.3515
Created: 6-Mar-2002
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
iron binding
Conserved site includes 4 residues -Click on image for an interactive view with Cn3D
Feature 1:iron binding site [ion binding site]
Evidence:
  • Structure:1RYT; Desulfovibrio vulgaris rubrerythrin with bound iron
  • Citation:PMID 8646540

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1           #  #            #  #          
1RYT_A      153 TKWRCRNCGYVHEGtgaPELCPACAHPKAHFELL 186 Desulfovibrio vulgaris
AAB90407    152 IAWVCLECGYIHYGtepPEECPSCGHPKAYYVAE 185 Archaeoglobus fulgidus DSM 4304
CAB72505    179 ELWVCEVCGHIHRGkkaPAACPLCKAPKEYFKRE 212 Campylobacter jejuni subsp. jejuni NCTC 11168
NP_069666   150 VEWMCLVCGYTEKGkepPKVCPNCGAMYYHFVSK 183 Archaeoglobus fulgidus DSM 4304
NP_561930   427 RYWKCLVCGEIFESpvcPEVCPVCGAGKEQFIEV 460 Clostridium perfringens str. 13
NP_562247   142 VKWVCTNCGYIHEGkeaPMNCPLCRFPQGYFRLL 175 Clostridium perfringens str. 13
ZP_00018072 110 MRWVCGVCGEIVRAleaPKHCPRCGADTHAFTHE 143 Chloroflexus aurantiacus
ZP_00099396 236 AMWECRICGHLVMGrkaPDVCPVCKYSQSYFEVR 269 Desulfitobacterium hafniense
EAA23562    142 VAWECMECGHLHYGndaPGKCPVCGADKAKFKRR 175 Fusobacterium nucleatum subsp. vincentii ATCC 49256
NP_783044     3 KKWKCLVCGVIFDGdvpPNPCPVCGASSDNFEEV 36  Clostridium tetani E88

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