Conserved Protein Domain Family
malate_synt_A

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cd00727: malate_synt_A 
Malate synthase A (MSA), present in some bacteria, plants and fungi. Prokaryotic MSAs tend to be monomeric, whereas eukaryotic enzymes are homomultimers. In general, malate synthase catalyzes the Claisen condensation of glyoxylate and acetyl-CoA to malyl-CoA, which hydrolyzes to malate and CoA. This reaction is part of the glyoxylate cycle, which allows certain organisms, like plants and fungi, to derive their carbon requirements from two-carbon compounds, by bypassing the two carboxylation steps of the citric acid cycle.
Statistics
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PSSM-Id: 238369
Aligned: 28 rows
Threshold Bit Score: 709.406
Created: 6-Mar-2002
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
active site
Feature 1:active site [active site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                        
6225655       30 VLTPe-----------ALEFVAKLARNFGERRLALLERRKTVQAAWSKGa-RPHFLPETka-vrEGDWTVAplpadLQER 96   Myxococcus xan...
6225438      496 ILTPd-----------ALAFLHDLNTEFNPRRLRLLSKRNQVQADINNSlwFPDFNKETevlrsDQGWKGAeiprdLQDR 564  Caenorhabditis...
126769        24 ILTAe-----------AVEFLTELVTHFTPQRNKLLAARIQQQQDIDNGt-LPDFISETas-irDADWKIRgipadLEDR 90   Escherichia coli
YP_361995     25 ALTTqiagqaellpaaALALLVSLHRAIEPGRQQRLAQRRQRQAAFDAGq-LPDFRTDTqa-irAGDWRVAplpaaLQDR 102  Xanthomonas ca...
ZP_00630786   24 VLTPe-----------ALGFVAELQDRFGLRLHALMVARARRQERIDRGe-LPDYLPQTre-irQGIWQAApvppaLEDR 90   Paracoccus den...
ZP_00957534   21 ILSSe-----------ALSLLADVHRRFDGERKRLLQERLDRQARLDAGeeILDFPSETqa-irNGEWTVPpapadLQDR 88   Oceanicaulis a...
XP_685378     23 LFTSd-----------ALQFLSELISAFQSEVDKVLNLRVLRKVQLDLTgeLPGFLQDTahirnDPSWRVSpvphrLHCR 91   zebrafish
XP_782946     14 LLTPq-----------AIRFVADMVIEFDNKVDQILRERIQRKLELDATnaQPDFRTDTlh-iqQGTWTVDpvprrLVNR 81   purple urchin
AAK23741      22 VLTPe-----------ALAFVADLHRRFDARRRQLLEARQARQARFDAGe-LPDFLDETas-irSADWTIAaipsdLLDR 88   Caulobacter cr...
CAG20662      29 VLSTe-----------ALLFLDAVVKKFAERRSELLALRDQRQLTFDNGe-LPDFRQDTkdirdDKSWKVApipaaLQDR 96   Photobacterium...
Feature 1                                                                                        
6225655       97 RVE--ITGPVDRKMVINALNSGAnVFMADFEDANSptwdNVVRGQINLRDAVRGTIsft-aenGKHYALnp--kRAVLFV 171  Myxococcus xan...
6225438      565 RVE--ITGPTDRKMVINAMNSGAnVFMADFEDSNSptwrNQLEGQINLYDAVRNNIsythpttKKEYTLne--kHAVLKV 640  Caenorhabditis...
126769        91 RVE--ITGPVERKMVINALNANVkVFMADFEDSLApdwnKVIDGQINLRDAVNGTIsyt-neaGKIYQLkp--nPAVLIC 165  Escherichia coli
YP_361995    103 RVE--ITGPTDPKMVINALNSGAkVFMADFEDSTAptwrNLLAGQRTLAAAVRGDLsfd-apnGKHYALrpeaeRAVLIV 179  Xanthomonas ca...
ZP_00630786   91 RVE--ITGPVDRKMMINALNSGArVFMADFEDATApsfaNIIAGQANLIDYRDGTLehddsatGKSYRVgp--rPALLIV 166  Paracoccus den...
ZP_00957534   89 RVE--ITGPVDRKMVINALNSGAkCFMADFEDASTpsweNMVEGQINLRDANARTInftdeksGKSYTLsd--tPATLIA 164  Oceanicaulis a...
XP_685378     92 HVDigDLSPCDTQRLIMGLKSTAqGLQVDFDDGNCptyrNQIKGIYNVYQAVHNQFq-----dAPHISQ-----APVLML 161  zebrafish
XP_782946     82 HVDlgDVSPANIQHFTRSLQSSAqGIQTDFDDGHCptrrTQIEGLYNVYRAVHNQIp-----gVPPIQH-----APILML 151  purple urchin
AAK23741      89 RVE--ITGPVNRKMIINALNCGAkVFMADFEDATAptwaNVVEGQINLKDRWQGELthvdaksGKAYAMgp--tSAVLKI 164  Caulobacter cr...
CAG20662      97 RVE--ITGPIDRKMVINALNSGAkVFMCCFEDASApsweNMINGQINLRDANAGTIsytdeakNKHYELnd--nPALLIA 172  Photobacterium...
Feature 1        #                                                                               
6225655      172 RPRGWHLPERHIeidgkPISGSLLDFGLFFFHNAReqlarGTGPYFYLPKMqsHLEARLWNDVFHLAQAELGIPRGTIKA 251  Myxococcus xan...
6225438      641 RPRGWHLPEKHVlihnqPTSGSLFDFGLFVFHNAKaliaqGSGPYFYLPKLqsAEEAQLWADVFKYTEDKLGLARGTIKC 720  Caenorhabditis...
126769       166 RVRGLHLPEKHVtwrgeAIPGSLFDFALYFFHNYQallakGSGPYFYLPKTqsWQEAAWWSEVFSYAEDRFNLPRGTIKA 245  Escherichia coli
YP_361995    180 RPRGWHLDEKHVlidgqPLAGGLFDAALFAFHNGRallakDRGPYLYLPKLqsMEEAALWDTALAHIEAMLGLPHGQIKV 259  Xanthomonas ca...
ZP_00630786  167 RPRGLHLPEANVliggqPVSAALFDFGLSLYHCGRalaatGRGPFYYLPKLegHGEARFWNEVFAFAQDRMGLAQGTIKA 246  Paracoccus den...
ZP_00957534  165 RARGLHLDEAHVtvdgaPVSGGFFDFVLYLFHNHAstaknGSGPYFYIPKLetRFEARLWSLVIRHCEEALGLKRGTVRI 244  Oceanicaulis a...
XP_685378    162 RPRAWNMVEHNMmvngrEVPGPLFDFGLLMFHNAKlllqnQSGPFFYLSKVesYMEARLWSQVFFWTEKKLGLPAGCIKA 241  zebrafish
XP_782946    152 RPRAWNMVEHNMivngkEVPGPLFDFGLLMFHNAKilldrESGPFFYLSKIegYREARLWDKIFTWAEVKLGLPLGCVKA 231  purple urchin
AAK23741     165 RPRGWHLMERHLevdgqAVAGALFDFGLYAFHNAKaaiakGSGPYFYLPKLesHLEARLWNDVFIRAQEVLDLPVGTIKA 244  Caulobacter cr...
CAG20662     173 RPRGLHLPEDHIqyngqPIPGSLMDFALYFFHNYQtraaqGLGVYYYIPKLesMEEAQWWDDIFNFTENYFKVETGTIRA 252  Photobacterium...
Feature 1            #                         # #                                               
6225655      252 TVLIETLPAAFEMDEILYELREHSAGLNCGRWDYIFSFIKTlqsdtrvVLPDRgqvt-mdkaFLNAYSQLLIQTCHRRNV 330  Myxococcus xan...
6225438      721 TVLIEHLLASFQLHEIIHALKDNIVGLNCGRWDYIFSYIKTfqnhrkfLLPDRfqig-mtapFMRNYSLEVIKACHLRGI 799  Caenorhabditis...
126769       246 TLLIETLPAVFQMDEILHALRDHIVGLNCGRWDYIFSYIKTlknypdrVLPDRqavt-mdkpFLNAYSRLLIKTCHKRGA 324  Escherichia coli
YP_361995    260 TVLIETLPAVFEMDEILHALRERIVGLNCGRWDYIFSYLKTfrahrdrVLPERgqvt-mtqpFLKAYSELLIKTCHRRGA 338  Xanthomonas ca...
ZP_00630786  247 TVLIETLPAAFEMDEIVWELRDHIAGLNCGRWDYIFSYIKTlrnhpayALPDRaqvg-menaFLAAYAARVVKVCHRRGI 325  Paracoccus den...
ZP_00957534  245 TVLIETLPATFELDEMLYELRENITAFNAGRWDYIFSFIKRqktdgskVLPDRaqvt-mtapFMAAYAERVIAVCHRRGA 323  Oceanicaulis a...
XP_685378    242 TVLIECVLASFEMEEILYELKEHSAGLNCGIWDYSASFVNKfgdradfLLPDRskyvdmekrFLHSYMDLLVQTCHRRGA 321  zebrafish
XP_782946    232 TVLIENILAAFEMHEILYELRKHSAGLNCGLWDYSASFVNKfghrpdfVLPDRhkyvnmerhFLKSYLVLTIKTCHQRGC 311  purple urchin
AAK23741     245 TVLIETIPAAFEMDEILFELKDHIVGLNCGRWDYIFSFIKRlgrreafLTPDRsamv-mgkaFLGAYSLKLIQTCHRRGA 323  Caulobacter cr...
CAG20662     253 TVLIETLPAVFQMDEILYVMRNHIVAMNCGRWDYIFSYIKTlknhkdrILPDRhgvg-mdktFLNAYSQLLVRTCHQRGA 331  Photobacterium...
Feature 1                                                                                        
6225655      331 HAMGgMAAFIPi-KGDAAANdaVMDKVRADKLREVKNGHDGTWVAHPGLVEIARDLFdsh-mkgPNQLSDkredvKIGEA 408  Myxococcus xan...
6225438      800 HAMGgMAAQIPi-KHDQVANdkAFALVRADKEREATDGHDGTWVAHPGLVPLAKRVFdqm-mpkPNQISKnltraNCTKE 877  Caenorhabditis...
126769       325 FAMGgMAAFIPs-KDEEHNNq-VLNKVKADKSLEANNGHDGTWIAHPGLADTAMAVFndilgsrKNQLEVmreqdAPITA 402  Escherichia coli
YP_361995    339 HAMGgMAAQIPi-NHDEAANeqAMARVRADKLREVTAGHDGTWVAHPALIPVAMKLFdeh-mptAHQQHVvrndvQVTRD 416  Xanthomonas ca...
ZP_00630786  326 HAMGgMSAAIPv-RGDAEANeaAFARVRADKQREVGMGFDGCWVAHPDLVPVAQAVFdaa-mpgPNQIRKprqqwRIEPA 403  Paracoccus den...
ZP_00957534  324 HAMGgMSAFIPv-KGDDAANeaAVEKVKADKTREASIGHDGAWVAHPALVPVAIEAFdkv-mpgPNQLDKk---pAVKED 398  Oceanicaulis a...
XP_685378    322 LATGgMAALLLprDKESDLYktVLNTVTRLKLLEIKAGVDGFMVYDMDLIEPMQKLFqlh-tggQNQLMQlrediTVTPN 400  zebrafish
XP_782946    312 HATGgMSALLLpsKKGPDNHprVMVSMVSSKLSEIKAGVDGFMVYDIGLLQPMQQVWakf-apsPNQLAVlrsdvKVQAR 390  purple urchin
AAK23741     324 FAMGgMAAQIPv-KGDEAANnaAFAKVRADKEREAGAGHDGTWVAHPDLVPVAMEVFnrl-mptPNQLDRklddlSITQA 401  Caulobacter cr...
CAG20662     332 LAMGgMSAFIPh-KDPKVMDq-VLAKVVEDKNRESNNGHDGTWVAHPHLVSTAMDIFdkhlagkTNQLDFdssyvGDITA 409  Photobacterium...
Feature 1                                                     #                                  
6225655      409 ELLkvps--gtrTEEGLRHNIRVGIQYTAAWLgGLGCVPLyNLMEDAATAEISRAQVWQWIHHgas----ledGRKVTLT 482  Myxococcus xan...
6225438      878 DLTvipe--gtrTEAGFRHNISVTLGYLDSWLrGTGCVPLyNLMEDAATAEISRAQLWQWLHHdak----ledGRTIDAG 951  Caenorhabditis...
126769       403 DQLlapc-dgerTEEGMRANIRVAVQYIEAWIsGNGCVPIyGLMEDAATAEISRTSIWQWIHHqkt----lsnGKPVTKA 477  Escherichia coli
YP_361995    417 MLIapsp--gnvTRAGFEGNVEVCVRYLAAWLdGNGCVPIhHLMEDAATAEISRAQLWQWLHHgqh----lddGTAIDQH 490  Xanthomonas ca...
ZP_00630786  404 MLLkphr--griTEAGVRLNIEVAVEYLAQWLsGRGAVPIqNMMEDAATAEISRAQLWQWLRHgapvvlengeERRLTAE 481  Paracoccus den...
ZP_00957534  399 REVltsacegtiTEDGLYGNADVAIRYIASWLqGRGAAPIhNLMEDAATAEISRAQLWQWRTHgak----tddGQLIDAD 474  Oceanicaulis a...
XP_685378    401 DLLimpa--ggvTLYGLRYNIAVGVLFIEAWLsGRGHFFYlGKVEDSATAEISRSQVWQWIRHqvrl---eddGTVVTRA 475  zebrafish
XP_782946    391 DLLlmps--ggvTLSGLKTNIAVGILFIDSWLiGRGHFPHaGSVEDSATAEISRSQVWQWIRHgtcl---ednKQPVTRQ 465  purple urchin
AAK23741     402 QMLelhe--gsrTEAGVRENIRVGVRYTQAWIeGRGAVPLyNLMEDAATAEICRTQLWQWVRLgaa----lddGRVLSSE 475  Caulobacter cr...
CAG20662     410 KTLlepc-egvrNEEGVRKNIRIALYYIESWIqGIGCVPIyGLMEDAATAEISRANIWQWIYHgvs----lddGQVFTAS 484  Photobacterium...
Feature 1                                                                 
6225655      483 LFRDALGEEmgrlekega-kerygaahLERARVLFEQLstagtfeDFLTLPAYDALE 538  Myxococcus xanthus
6225438      952 LVKQTIAAEterrlir----agsvvnrIPEAADLLEKFvteekmsDFLTDRRLRQAC 1004 Caenorhabditis elegans
126769       478 LFRQMLGEEmkviaselg-eerfsqgrFDDAARLMEQIttsdeliDFLTLPGYRLLA 533  Escherichia coli
YP_361995    491 LLQATLRALparlgtat---alpgaarIDEAIALLEELsradelaDFLTVPAYRLID 544  Xanthomonas campestris pv. vesicatori...
ZP_00630786  482 WLGELMQAEivrildrlg-pngfhrghYASAARIVQEAataetlpDFITVPAYDVLN 537  Paracoccus denitrificans PD1222
ZP_00957534  475 RVKAVIAKAagaikaevg-dnawaggrFSEAADILTELalsesfeEFLTLPAYGKIQ 530  Oceanicaulis alexandrii HTCC2633
XP_685378    476 LVSRLAEDLigelktamrcqtnrdkqrLMTAVSMFLEIvqknsfpEFLTTYLNLDHT 532  zebrafish
XP_782946    466 LVIELTQAFladaqgasrsghgdatkrLRVSANIFLQLvmkrdfpEFITTYLNLTDS 522  purple urchin
AAK23741     476 LFVSLFSQEmsdlrr------efasprLEEAAHIFTRMvl----sDDLEEFLTIPAY 522  Caulobacter crescentus CB15
CAG20662     485 LFRKWLNEElntikievg-qtrynngrFEETAALFDQIstaeefaAFLTLPSYSLLT 540  Photobacterium profundum SS9

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