1FYJ,1AIL,1R1B,1YSH,2AW7,1A32,1G1X,1DK1


Conserved Protein Domain Family
S15_NS1_EPRS_RNA-bind

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cd00677: S15_NS1_EPRS_RNA-bind 
Click on image for an interactive view with Cn3D
S15/NS1/EPRS_RNA-binding domain. This short domain consists of a helix-turn-helix structure, which can bind to several types of RNA. It is found in the ribosomal protein S15, the influenza A viral nonstructural protein (NSA) and in several eukaryotic aminoacyl tRNA synthetases (aaRSs), where it occurs as a single or a repeated unit. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions in the formation of tRNA-synthetases into multienzyme complexes. While this domain lacks significant sequence similarity between the subgroups in which it is found, they share similar electrostatic surface potentials and thus are likely to bind to RNA via the same mechanism.
Statistics
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PSSM-Id: 238361
Aligned: 176 rows
Threshold Bit Score: 37.1033
Created: 24-Sep-2002
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
RNA binding
Conserved site includes 6 residues -Click on image for an interactive view with Cn3D
Feature 1:RNA binding site [nucleic acid binding site]
Evidence:
  • Comment:RNA binding involves electrostatic interactions
  • Structure:1DK1_A; ribosomal protein S15 binds the central domain of 16S rRNA

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1          #      #      #           #          #   #  
1FYJ_A         6 YNRVAVQGDVVRELKAKka-------pkEDVDAAVKQLLSLKAEYK 44  human
1DK1_A        25 EVQVALLTLRINRLSEHlkvhkkdhhshRGLLXXVGQRRRLLRYLQ 70  Thermus thermophilus
XP_391940     75 RDSVKEQGDYVRKLKFDga-------seLDIKKAVVELKLRKKLLE 113 honey bee
AAK92837      14 RERVQEQGNLVRDLKAKga-------peIDVKKAVAELKARKKLLE 52  fruit fly
Q10039        78 RAAVKEYGDLIRDLKAKga-------pkIDIDKAVVELKARKRLLE 116 Caenorhabditis elegans
XP_784166     19 RASVKEQGDLVRQMKEGgt-------paHDIKRAVVELKARKKALE 57  purple urchin
AAX25703      61 RAKVRDQGNLVRRLKEEka-------sdGALKEAVTILKSYKKALD 99  Schistosoma japonicum
AAH96883      93 RLAVKEQGDLVRQLKAEna-------pdVDVSKAVAELKARKRFLE 131 zebrafish
AAH77232      76 RLAVKEQGDLVRKLKEEkv-------pqVDVDRAVAELKARKRTLE 114 African clawed frog
NP_001026681  14 RQAVRHQGELVRKLKEEka-------pqVDIDRAVAELKARKRVLE 52  chicken

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