1SER,1SES,1H4S,1QE0,1KOG,1KMM,1GGM


Conserved Protein Domain Family
Gly_His_Pro_Ser_Thr_tRS_core

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cd00670: Gly_His_Pro_Ser_Thr_tRS_core 
Click on image for an interactive view with Cn3D
Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain. This domain is the core catalytic domain of tRNA synthetases of the subgroup containing glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. These enzymes belong to class II aminoacyl-tRNA synthetases (aaRS) based upon their structure and the presence of three characteristic sequence motifs in the core domain. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ and the accessory subunit of mitochondrial polymerase gamma (Pol gamma b) . Most class II tRNA synthetases are dimers, with this subgroup consisting of mostly homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Statistics
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PSSM-Id: 238359
Aligned: 13 rows
Threshold Bit Score: 164.101
Created: 24-Sep-2002
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 15 residues -Click on image for an interactive view with Cn3D
Feature 1:active site [active site]
Evidence:
  • Structure:1GGM_A; T. thermophilus GlyRS bound to Glycyl-adenylate using 3.5A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                       
1SER_A      165 LALYELALLRFAMDFMARRg--------------FLPMTLPSYARekaflgtg------------------hfpayrdqV 212 Thermus thermoph...
1SES_A      165 LALYELALLRFAMDFMARRg--------------FLPMTLPSYARekaflgtg------------------hfpayrdqV 212 Thermus thermoph...
Q9ZMJ6       46 AKKVLDKIENVTHKRMQEHg--------------AQNILMSFVVLaslweksg------------------rldkygkeL 93  Helicobacter pyl...
1H4S_A       43 GYAIWENIQQVLDRMFKETg--------------HQNAYFPLFIPmsflrkeae-----------------hvegfspeL 91  Thermus thermoph...
1QE0_A       15 DSKKWRYIENQLDELMTFYn--------------YKEIRTPIFEStdlfargvg----------------dstdvvqkeM 64  Staphylococcus a...
1KOG_A       29 GWTIFRELEVFVRSKLKEYq--------------YQEVKGPFMMDrvlwektg------------------hwdnykdaM 76  Escherichia coli
1KMM_C       18 ETAIWQRIEGTLKNVLGSYg--------------YSEIRLPIVEQtplfkraig----------------evtdvvekeM 67  Escherichia coli
Q58477      223 ITALFRALEELIVEEVVKKi-------------gFQECLFPKLIPleimykmr------------------yleglpegM 271 Methanocaldococc...
1GGM_A       38 GVELKNNLKQAWWRRNVYErd------------dMEGLDASVLTHrlvlhysgheatfadpmvdnakarywtppryfnmM 105 Thermus thermoph...
O27194      219 ITALHRALEEFFIERIVKPl-------------gFVECLFPKLIPldimnkmr------------------yleglpegM 267 Methanothermobac...
NP_355511    61 IAAFERLIDRTGGADGAEAirfppginrayfeksGYMKSFPQLAGtvhsfcgc-------------------eldhvslL 121 Agrobacterium tu...
ZP_00066383  44 VDQFEAFATRMGADANAEVmrfppifgrhtymqtDHVETMPDLMGsvnsfcgn-------------------ekehralI 104 Microbulbifer de...
ZP_00025851 200 ADGLNAAFTRIGADQNAEVlrfppaigkddfetsEYLKSFPQLAGtihsfcgd-------------------drghrqlL 260 Ralstonia metall...
Feature 1                                                   # #                             # # 
1SER_A      213 WAIAe--------------------------------tDLYLTGTAEVVLNALHSGEilpy-ealPLRYAGYAPAFRSEa 259 Thermus thermoph...
1SES_A      213 WAIAe--------------------------------tDLYLTGTAEVVLNALHSGEilpy-ealPLRYAGYAPAFRSEa 259 Thermus thermoph...
Q9ZMJ6       94 LVFKdrk-----------------------------dnDFVLSPTLEENITEIAANFiksy-kqlPVHLYQIHTKFRDEi 143 Helicobacter pyl...
1H4S_A       92 AVVThagge-------------------------eleePLAVRPTSETVIGYMWSKWirsw-rdlPQLLNQWGNVVRWEm 145 Thermus thermoph...
1QE0_A       65 YTFKdkg-----------------------------drSITLRPEGTAAVVRSYIEHkmqgnpnqPIKLYYNGPMFRYEr 115 Staphylococcus a...
1KOG_A       77 FTTSse------------------------------nrEYCIKPMNCPGHVQIFNQGlksy-rdlPLRMAEFGSCHRNEp 125 Escherichia coli
1KMM_C       68 YTFEdrn-----------------------------gdSLTLRPEGTAGCVRAGIEHgll--ynqEQRLWYIGPMFRHEr 116 Escherichia coli
Q58477      272 YYVCppkrepelfkefvnemmikkeipieklknllrdpGYVLAPAQCEPFYQFFEGEvidv-dkpIMFFDRSGWTYRWEg 350 Methanocaldococc...
1GGM_A      106 FQDLrgprg-------------------------grglLAYLRPETAQGIFVNFKNVldatsrklGFGIAQIGKAFRNEi 160 Thermus thermoph...
O27194      268 YYCSapsrdpetfeefkneliinrevpmdllkrgikdpGYVIAPAQCEPFYQFLSHEvvsaedlpVKFFDRSGWTYRWEa 347 Methanothermobac...
NP_355511   122 KSMDeggdwt----------------------kdqkatDIVLTPAACYPLYPTIAKRgal--pagGGLYDIQSYCFRHEp 177 Agrobacterium tu...
ZP_00066383 105 AKIEekdenwc---------------------kdltptDVMLVPAACYPLYPTASGSvlp---egGRTVDLKTFVFRHEp 160 Microbulbifer de...
ZP_00025851 261 ARLEdkqdwt----------------------dqqqftGVVMTPAACYPIYPVIGKRgpl--paeGKIVDVMSYCYRHEp 316 Ralstonia metall...
Feature 1                  ##  # # #                                                            
1SER_A      260 gsfgkdvrglmRVHQFHKVEQYVLTeasleasDRAFQELLENAEEILRll---elPYRLVEVATgdmg------------ 324 Thermus thermoph...
1SES_A      260 gsfgkdvrglmRVHQFHKVEQYVLTeasleasDRAFQELLENAEEILRll---elPYRLVEVATgdmg------------ 324 Thermus thermoph...
Q9ZMJ6      144 rpr----fglvRAREFIMKDGYSFHeda-eslDKEFLNTQSAYKEILSdl---glDFRIVEADSgai------------- 202 Helicobacter pyl...
1H4S_A      146 rtr-----pflRTSEFLWQEGHTAHatr-eeaEEEVRRMLSIYARLAReya--aiPVIEGLKTEkekf------------ 205 Thermus thermoph...
1QE0_A      116 kq-------kgRYRQFNQFGVEAIGae----nPSVDAEVLAMVMHIYQsfg--lkHLKLVINSVgdmasrkeynealvkh 182 Staphylococcus a...
1KOG_A      126 sgsl---hglmRVRGFTQDDAHIFCtee--qiRDEVNGCIRLVYDMYStfg--feKIVVKLSTRpekrigsdemwdraea 198 Escherichia coli
1KMM_C      117 pq-------kgRYRQFHQLGCEVFGlq----gPDIDAELIMLTARWWRalg-iseHVTLELNSIgslearanyrdalvaf 184 Escherichia coli
Q58477      351 gga----rgldRVNEFLRVECVWIGspe--fvEETRDKTLKYAEKLAEkl---dlEYWVEVGDDpfylegrkk------- 414 Methanocaldococc...
1GGM_A      161 tpr----nfifRVREFEQMEIEYFVrpg--edEYWHRYWVEERLKWWQemglsreNLVPYQQPPessa------------ 222 Thermus thermoph...
O27194      348 ggs----kgldRVHEFQRVELVWLAepg--etEEIRDRTVELSHDAADel---elEWYTEVGDDpfylegrkv------- 411 Methanothermobac...
NP_355511   178 sk------dpaRQQLFRMREYVCMGtes--dvTEFRQTWMDRGVEMMKav---glDVTIDIANDpffgragk-------- 238 Agrobacterium tu...
ZP_00066383 161 sd------dpaRMQIFRQREYVRLGtpe--qaLQHRNHWLQTAEGMHKel---glEVEVVVANDpffgrggr-------- 221 Microbulbifer de...
ZP_00025851 317 sl------eptRMQLFRQREYVCLGspe--riVAFRELWMERGLAFGRal---qlPVEVDVANDpffgrggk-------- 377 Ralstonia metall...
Feature 1                                                                                       
1SER_A      325 ------------------------------------------------------------------------------pg 326 Thermus thermoph...
1SES_A      325 ------------------------------------------------------------------------------pg 326 Thermus thermoph...
Q9ZMJ6      203 -------------------------------------------------------------------------------g 203 Helicobacter pyl...
1H4S_A      206 ------------------------------------------------------------------------------ag 207 Thermus thermoph...
1QE0_A      183 fepvihefcsdcqsrlhtdpmrildckvdrdkeaiktapritdflneeskayyeqvkaylddlgipytedpnlvrgldyy 262 Staphylococcus a...
1KOG_A      199 dlav----------------------------------------------------------aleennipfeyqlgegaf 220 Escherichia coli
1KMM_C      185 leqhkekldedckrrmytnplrvldsknpevqallndapalgdyldeesrehfaglckllesagiaytvnqrlvrgldyy 264 Escherichia coli
Q58477      415 --------------------------------------------------------------------------edrgie 420 Methanocaldococc...
1GGM_A      223 ------------------------------------------------------------------------------hy 224 Thermus thermoph...
O27194      412 --------------------------------------------------------------------------eergie 417 Methanothermobac...
NP_355511   239 --------------------------------------------------------------------------mlannq 244 Agrobacterium tu...
ZP_00066383 222 --------------------------------------------------------------------------vmkatq 227 Microbulbifer de...
ZP_00025851 378 --------------------------------------------------------------------------ivadsq 383 Ralstonia metall...
Feature 1                                                                                       
1SER_A      327 kwRQVDIEVYlpse------------------------------------------------------------------ 340 Thermus thermoph...
1SES_A      327 kwRQVDIEVYlpse------------------------------------------------------------------ 340 Thermus thermoph...
Q9ZMJ6      204 gsKSREFVVLtecgedtivvcqncdyaanieiakrskrteplmspsalakfptpnttsapsvaeffktepyfvlkalvnk 283 Helicobacter pyl...
1H4S_A      208 avYTTTIEALmkd------------------------------------------------------------------- 220 Thermus thermoph...
1QE0_A      263 thTAFELMMDnpny------------------------------------------------------------------ 276 Staphylococcus a...
1KOG_A      221 ygPKIEFTLYdcl------------------------------------------------------------------- 233 Escherichia coli
1KMM_C      265 nrTVFEWVTNslg------------------------------------------------------------------- 277 Escherichia coli
Q58477      421 fpDVPKYEMRlwlph----------------------------------------------------------------- 435 Methanocaldococc...
1GGM_A      225 akATVDILYRfph------------------------------------------------------------------- 237 Thermus thermoph...
O27194      418 fpDVPKYEMRlslp------------------------------------------------------------------ 431 Methanothermobac...
NP_355511   245 rdQNLKFELLipvt------------------------------------------------------------------ 258 Agrobacterium tu...
ZP_00066383 228 reQELKFEIVtpic------------------------------------------------------------------ 241 Microbulbifer de...
ZP_00025851 384 reLKLKFELLipvn------------------------------------------------------------------ 397 Ralstonia metall...
Feature 1                                                                                       
1SER_A          --------------------------------------------------------------------------------     Thermus thermoph...
1SES_A          --------------------------------------------------------------------------------     Thermus thermoph...
Q9ZMJ6      284 vihkdketlacffvrgddnleetkalntlnllganalelreaneedlnkagliagfigpyglkkhvcyiifdedlkegdc 363 Helicobacter pyl...
1H4S_A          --------------------------------------------------------------------------------     Thermus thermoph...
1QE0_A          --------------------------------------------------------------------------------     Staphylococcus a...
1KOG_A          --------------------------------------------------------------------------------     Escherichia coli
1KMM_C          --------------------------------------------------------------------------------     Escherichia coli
Q58477          --------------------------------------------------------------------------------     Methanocaldococc...
1GGM_A          --------------------------------------------------------------------------------     Thermus thermoph...
O27194          --------------------------------------------------------------------------------     Methanothermobac...
NP_355511       --------------------------------------------------------------------------------     Agrobacterium tu...
ZP_00066383     --------------------------------------------------------------------------------     Microbulbifer de...
ZP_00025851     --------------------------------------------------------------------------------     Ralstonia metall...
Feature 1                                                       #      #                        
1SER_A      341 --------------------------------------------gryRETHSCSALLdwqarranlr------------- 363 Thermus thermoph...
1SES_A      341 --------------------------------------------gryRETHSCSALLdwqarranlr------------- 363 Thermus thermoph...
Q9ZMJ6      364 livganekdfhavgvdlkgfenlvyadivqvkesdccpncqgalkyhKSLEVGHIFKlgqsyakslka------------ 431 Helicobacter pyl...
1H4S_A      221 --------------------------------------------gkaLQAGTSHYLGenfarafdik------------- 243 Thermus thermoph...
1QE0_A      277 -------------------------------------------dgaiTTLCGGGRYNgllel------------------ 295 Staphylococcus a...
1KOG_A      234 --------------------------------------------draWQCGTVQLDFslpsrlsasy------------- 256 Escherichia coli
1KMM_C      278 ---------------------------------------------sqGTVCAGGRYDglveq------------------ 294 Escherichia coli
Q58477      436 ------------------------------------------ikderKGVAVTSANVhgthfvegfr------------- 460 Methanocaldococc...
1GGM_A      238 ---------------------------------------------gsLELEGIAQRTdfdlgshtkdqealgitarvlrn 272 Thermus thermoph...
O27194      432 --------------------------------------------greKGVAVVSANVhgthfiegfs------------- 454 Methanothermobac...
NP_355511   259 --------------------------------------------satNPTACMSFNYhqdafgqkwg------------- 281 Agrobacterium tu...
ZP_00066383 242 --------------------------------------------seeKPTAITSCNChldhfghsfn------------- 264 Microbulbifer de...
ZP_00025851 398 --------------------------------------------dgaPPTACMSFNYhmdhfgalwh------------- 420 Ralstonia metall...
Feature 1                              # #   #  #      
1SER_A      364 ---------yrdpegrvryAYTLNNTa-LAtpRILAMLL 392 Thermus thermophilus
1SES_A      364 ---------yrdpegrvryAYTLNNTa-LAtpRILAMLL 392 Thermus thermophilus
Q9ZMJ6      432 --------sfldkngkerfFEMGCYG--IGisRLLSVIL 460 Helicobacter pylori J99
1H4S_A      244 ---------fqdrdlqvkyVHTTSWG--LSw-RFIGAII 270 Thermus thermophilus
1QE0_A      296 --------------ldgpsETGIGFA--LSieRLLLALE 318 Staphylococcus aureus
1KOG_A      257 ----------vgednerkvPVMIHRAilGSmeRFIGILT 285 Escherichia coli
1KMM_C      295 --------------lggraTPAVGFA--MGleRLVLLVQ 317 Escherichia coli
Q58477      461 ----------ikdykgrrvWTGCTGY--GIt-RWVVGYL 486 Methanocaldococcus jannaschii
1GGM_A      273 ehstqrlayrdpetgkwfvPYVIEPS--AGvdRGVLALL 309 Thermus thermophilus
O27194      455 ----------irearnlniWTGCTGI--GLs-RWIYGFL 480 Methanothermobacter thermautotrophicus
NP_355511   282 ----------lnlengdvaHTACVGF--GLe-RIALALF 307 Agrobacterium tumefaciens str. C58 (Cereon)
ZP_00066383 265 ----------iktadgepaHTSCIGF--GLe-RIALALF 290 Microbulbifer degradans 2-40
ZP_00025851 421 ----------iglhdggvaHTGCVGF--GIe-RLVLALL 446 Ralstonia metallidurans

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