1A8H,1F4L,1FFY,1GAX,1WZ2,1JZS


Conserved Protein Domain Family
Ile_Leu_Val_MetRS_core

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cd00668: Ile_Leu_Val_MetRS_core 
Click on image for an interactive view with Cn3D
catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases
Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Statistics
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PSSM-Id: 185674
Aligned: 7 rows
Threshold Bit Score: 271.214
Created: 24-Sep-2002
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 13 residues -Click on image for an interactive view with Cn3D
Feature 1:active site [active site]
Evidence:
  • Structure:1JZS_A; T. thermophilus IleRS bound to Mupirocin (based on associated journal article)

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1            #       #  #                           #                                 
1A8H_A      4 VFYVTTPIYYVNAEPHLGHAYtTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAGe------------------ 65   Thermus thermophilus
1F4L_A      7 KILVTCALPYANGSIHLGHMLeHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQLGi------------------ 68   Escherichia coli
1FFY_A     49 TFILHDGPPYANGNLHMGHALnKILKDFIVRYKTMQGFYAPYVPGWDTHGLPIEQALTKKGvdrkkms------------ 116  Staphylococcus au...
1GAX_A     35 PFVIFMPPPNVTGSLHMGHALdNSLQDALIRYKRMRGFEAVWLPGTDHAGIATQVVVERLLlkegktrhd--------lg 106  Thermus thermophilus
1WZ2_A     35 KFYITVAFPYLSGHLHVGHARtYTIPDVIARFKRMQGYNVLFPMAWHITGSPIVGIAERIKnrdpktiwiyrdvykvpee 114  Pyrococcus horiko...
1JZS_A     39 RYTVYEGPPTANGLPHVGHAQaRSYKDLFPRYKTMRGYYAPRRAGWDTHGLPVELEVEKKLglkskreiea-------yg 111  Thermus thermophilus
O28059     35 HYIIDTPPPYPTGSFHIGHALnWCIIDFIARYKRMNGYEVMFPQGWDCHGLPTEVKVEEKYgikkgdip----------- 103  Archaeoglobus ful...
Feature 1                                                                                     
1A8H_A     66 ------dPKAFVDRVSGRFKRAWDLLGIAYD--DFIRTt--eERHKKVVQLVLKKVYeaGDIYYGEYEGlycvscerfyt 135  Thermus thermophilus
1F4L_A     69 ------tPEQMIGEMSQEHQTDFAGFNISYD--NYHSTh--sEENRQLSELIYSRLKenGFIKNRTISQlydpekgmflp 138  Escherichia coli
1FFY_A    117 taefrekCKEFALEQIELQKKDFRRLGVRGDfnDPYITl--kPEYEAAQIRIFGEMAdkGLIYKGKKPVywspssessla 194  Staphylococcus au...
1GAX_A    107 rekflerVWQWKEESGGTILKQLKRLGASADwsREAFTm--dEKRSRAVRYAFSRYYheGLAYRAPRLVnwcprcettls 184  Thermus thermophilus
1WZ2_A    115 ilwtfedPINIVKYFMKAAKETFIRAGFSVDwsREFYTtslfPPFSKFIEWQFWKLKekGYIVKGAHRVrwdpvvgtplg 194  Pyrococcus horiko...
1JZS_A    112 ierfnqaCRESVFTYEKEWEAFTERIAYWVDleDAYATl--ePTYIESIWWSLKNLFdrGLLYRDHKVVpycprcgtpls 189  Thermus thermophilus
O28059    104 rdefrrlCVEFTEENIAKMRETARRMGYSIDwsKEYITm--yPEYYSKTQLSFVRMYnkGLIYRDYHPVvfcprcettia 181  Archaeoglobus ful...
Feature 1                                                                                     
1A8H_A    136 ekel---------------------------------------------------------------------------- 139  Thermus thermophilus
1F4L_A    139 drfvkgtcpkckspdqyg-------------------------------------------------------------- 156  Escherichia coli
1FFY_A    195 eaeieyhdkrsasiyvafnvkddkgvvdadakfiiwtttpwtipsnvaitvhpelkygqynvngekyiiaealsdavaea 274  Staphylococcus au...
1GAX_A    185 dleveteptpgklytlryevegggfieiatvrpetvfadqaiavhpederyrhllgkraripltevwipiladpavekd- 263  Thermus thermophilus
1WZ2_A    195 dhdlmegedvpildyiiikfelrengeviylpaatlrpetvygvtnmwvnpnatyvkakvrrkdkeetwivskeaaykls 274  Pyrococcus horiko...
1JZS_A    190 shevalgykeiqdpsvyvrfplkepkklglekaslliwtttpwtlpgnvaaavhpeytyaafqvgdealileeglgrkll 269  Thermus thermophilus
O28059    182 laeieyrqgktklnyikfdddviiattrpelipacvaiavhpddernkhligkkvrvpttpyeveviadeevdpef---- 257  Archaeoglobus ful...
Feature 1                                                                                     
1A8H_A        --------------------------------------------------------------------------------      Thermus thermophilus
1F4L_A        --------------------------------------------------------------------------------      Escherichia coli
1FFY_A    275 ldwdkasiklekeytgkelew-----------------------------------------------------vvaqhp 301  Staphylococcus au...
1GAX_A        --------------------------------------------------------------------------------      Thermus thermophilus
1WZ2_A    275 fqdreievieefkgekligkyvrnpvsgdeviilpaefvdpdnatgvvmsvpahapfdhvaledlkreteilekydidpr 354  Pyrococcus horiko...
1JZS_A    270 gegtqvlktfpgkaleglp--------------------------------------------------------ytppy 293  Thermus thermophilus
O28059        --------------------------------------------------------------------------------      Archaeoglobus ful...
Feature 1                                                                                     
1A8H_A        --------------------------------------------------------------------------------      Thermus thermophilus
1F4L_A    157 ----------------------------------------------------------------------------dnce 160  Escherichia coli
1FFY_A    302 fldreslvingdhvttdagtgcvhtapghgeddyivgqqyelpvispiddkgvfteeggqfegmfydkankavtdlltek 381  Staphylococcus au...
1GAX_A    264 ---------------fgtgalkvtpahdpldyeigerhglkpvsvinlegrmegervpealrgldrfearrkavelfrea 328  Thermus thermophilus
1WZ2_A    355 ivenityisliklegygdfpaveevnklgiksqkdkekleqatktiykaeyhkgifkvppyegkpvqevkeaiakemlek 434  Pyrococcus horiko...
1JZS_A    294 pqalekgyfvvladyvsqedgtgivhqapafgaedletarvyglpllktvdeegkllvepfkglyfreanrailrdlrgr 373  Thermus thermophilus
O28059    258 ------------------gtgvvmictfgdrqdvkwwkkhklelrnivgrdgrlnekagryagmtipeareailedlkke 319  Archaeoglobus ful...
Feature 1                                                                                     
1A8H_A    140 -----------veglcpihgrpverRKEGNYFFRMe--kYRPWLQEYIQenpdlirpEGYRN-EVLAMLAepigdlsISR 205  Thermus thermophilus
1F4L_A    161 vcgatyspteliepksvvsgatpvmRDSEHFFFDLp--sFSEMLQAWTRsga---lqEQVAN-KMQEWFEsglqqwdISR 234  Escherichia coli
1FFY_A    382 gallkldfithsyphdwrtkkpvifRATPQWFASIs--kVRQDILDAIEntn--fkvNWGKT-RIYNMVRdrg-ewvISR 455  Staphylococcus au...
1GAX_A    329 ghlvkeedytialatcsrcgtpieyAIFPQWWLRMr--pLAEEVLKGLRrgdiafvpERWKK-VNMDWLEnvk-dwnISR 404  Thermus thermophilus
1WZ2_A    435 giaeimyefaeknvisrfgnravikIIHDQWFIDYgnpeWKEKARKALErmk--ilpETRRA-QFEAIIDwld-kkaCAR 510  Pyrococcus horiko...
1JZS_A    374 gllfkeesylhsyphcwrcstplmyYATESWFIKNt--lFKDELIRNNQeih--wvpPHIKEgRYGEWLKnlv-dwaLSR 448  Thermus thermophilus
O28059    320 gkllkqveidhnvgtcwrcktpveiIPAEQWFVKV----EKEKILEAAKrik--wvpEHMYS-RLESWVQsmewdwvISR 392  Archaeoglobus ful...
Feature 1                                                                                #    
1A8H_A    206 PKsrvPWGIPLPwd------------------------------------------------------eNHVTYVWFDAL 231  Thermus thermophilus
1F4L_A    235 DAp--YFGFEIPna------------------------------------------------------pGKYFYVWLDAP 258  Escherichia coli
1FFY_A    456 QR---VWGVPLPvfyaengeiimtketvnhvadlfaehgsniwfereakdllpegfthpgspngtftkeTDIMDVWFDSG 532  Staphylococcus au...
1GAX_A    405 QL---WWGHQIPawycedcqavnvprpery---------------------ledptsceacgsprlkrdEDVFDTWFSSA 460  Thermus thermophilus
1WZ2_A    511 KI---GLGTPLPwd------------------------------------------------------pEWVIESLSDST 533  Pyrococcus horiko...
1JZS_A    449 NR---YWGTPLPiwvcqacgkeeaigsfqelkaratkpl---pepfdphrpyvdqvelacacggtmrrvPYVIDVWYDSG 522  Thermus thermophilus
O28059    393 QR---IFATPIPawyckncgevvvakeewlpvd---------------ptatqppepcpkcgstefrgeTDVLDTWMDSS 454  Archaeoglobus ful...
Feature 1                                                                                #  ##
1A8H_A    232 LNYVSALdypegea--------------------------------------------------yrtfwpHAWHLIGKDI 261  Thermus thermophilus
1F4L_A    259 IGYMGSFknlcdkrgdsvs----------------------------------------fdeywkkdstaELYHFIGKDI 298  Escherichia coli
1FFY_A    533 SSHRGVLetrpe------------------------------------------------------lsfpADMYLEGSDQ 558  Staphylococcus au...
1GAX_A    461 LWPLSTLgwpeete-------------------------------------------------dlkafypGDVLVTGYDI 491  Thermus thermophilus
1WZ2_A    534 IYMAYYTisrhinklrqegkldpekltpeffdyifleefsedkekelekktgipaeiihemkeefeywypLDWRCSGKDL 613  Pyrococcus horiko...
1JZS_A    523 AMPFASLhypfehee------------------------------------------------vfresfpADFIAEGIDQ 554  Thermus thermophilus
O28059    455 ITPLMICgwpsl------------------------------------------------------keypTHLRPQGHDI 480  Archaeoglobus ful...
Feature 1        #                       # #        # #                                     
1A8H_A    262 LKPHAVFWPTMLKAAGip--mYRHLNVGGFLLGpdgrKMSKTLGNVVDPFALLEKYGRDALRYYLLREip-yGQDTPV 336  Thermus thermophilus
1F4L_A    299 VYFHSLFWPAMLEGSNfr--kPSNLFVHGYVTVng-aKMSKSRGTFIKASTWLNHFDADSLRYYYTAKlssrIDDIDL 373  Escherichia coli
1FFY_A    559 YRGWFNSSITTSVATRgv-spYKFLLSHGFVMDgegkKMSKSLGNVIVPDQVVKQKGADIARLWVSSTd--yLADVRI 633  Staphylococcus aureus
1GAX_A    492 LFLWVSRMEVSGYHFMge-rpFKTVLLHGLVLDekgqKMSKSKGNVIDPLEMVERYGADALRFALIYLat-gGQDIRL 567  Thermus thermophilus
1WZ2_A    614 IPNHLTFFIFNHVAIFreehwPKGIAVNGFGTLeg-qKMSKSKGNVLNFIDAIEENGADVVRLYIMSLae-hDSDFDW 689  Pyrococcus horikosh...
1JZS_A    555 TRGWFNSLHQLGVMLFgs-iaFKNVICHGLILDekgqKMSKSKGNVVDPWDIIRKFGADALRWYIYVSap-pEADRRF 630  Thermus thermophilus
O28059    481 IRTWAFYTILRSLALEgq-ipWYEIVINGMVFGedgrKMSKSLGNVIVPEEVVEKYGVDALRQWAASGv--iGDDIIF 555  Archaeoglobus fulgidus

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