Conserved Protein Domain Family
Methyltransferase_Sun

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cd00620: Methyltransferase_Sun 
N-terminal RNA binding domain of the methyltransferase Sun. The rRNA-specific 5-methylcytidine transferase Sun, also known as RrmB or Fmu shares the RNA-binding non-catalytic domain with the transcription termination factor NusB. The precise biological role of this domain in Sun is unknown, although it is likely to be involved in sequence-specific RNA binding. The C-terminal methyltransferase domain of Sun has been shown to catalyze formation of m5C at position 967 of 16S rRNA in Escherichia coli.
Statistics
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PSSM-Id: 238343
Aligned: 11 rows
Threshold Bit Score: 137.086
Created: 6-Mar-2002
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative RNA
Feature 1:putative RNA binding site [nucleic acid binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1     ####                                                                            
1169715     5 RNLRSMAAQAVEQVVEQ--------GQSLSNILPPLQQkvs---dkDKALLQELCFGVLRTLSQLDWLINKLMARPmt-g 72  Escherichia coli
1169716    20 LSTRAIAANLILQVLDE--------GKSLSALIPEVQLsvk---aqDLPLLQEICFGVCRVLPRLEQIIKRLVDKPlk-g 87  Haemophilus influe...
4210751     3 KNARQTALDVLNDIFGN--------DAYANISLDRNLRdsel-stvDKGFVTALVYGVVSKKALLEWYITPLLKKE---- 69  Lactococcus lactis
2500952     2 ISARQLAFLILRDINRRd-------SYTDVAIDRALQKhpl--sppDRRFCTELVYGVVRRQRTLDCLIEQLGDRPig-k 71  Synechocystis sp. ...
3915867     4 TSVRDIALEALIKLEQN--------QAYSNLLLKSVIKsnel-sdqNRGLLTELVYGTLQNKIALDYMLKPFINKPq--k 72  Bacillus subtilis
4982078     3 TNVRLLAYRLLRKYEKEk-------FISREDVDSVLSFld----drDRRFFKELVWGVVRKEELLDWYINQLLKKKd--- 68  Thermotoga maritima
1169714     1 MNTRATTAILVNQVVQK--------KCSLTALLSANKK--------NQSLIQELCYGTLRWYFKLKLIAEKLLHAPlr-d 63  Coxiella burnetii
6459968    36 NPAREVAVRVLIRVLAGe-------GFAATALDSALQSarl--pgrDAGLATHIVYGTLRHFPSLDAALSPLLTGK---- 102 Deinococcus radiod...
2829532    14 DPARRAAFETLRAVSAR--------DAYANLVLPALLAqrgi-ggrDAAFATELTYGTCRARGLLDAVIGAAAERSpq-a 83  Mycobacterium tube...
2648195     1 MSARSDGSNVIPTQEIAakvl-aevERSRISVKSAVQKlaggfdykVRGSVHAYSVETLKRLNAIDYFLKSTLKKFd--g 77  Archaeoglobus fulg...
3257494     3 LFYRVTLHEIIADALTLieerelssKHALERVFRRVEGkdk---etARGIAHAYVFEIEKWRAKIDFILNSVLKGSrved 79  Pyrococcus horikoshii
Feature 1                                                               
1169715    73 KQRTVHYLIMVGLYQLLYTR-IPPHAALAETVEGAIAIkrpQLKGLINGVLRQFQRQQ 129 Escherichia coli
1169716    88 KTRIVHCLLLVGLYQLLYMR-VPAHAAVDEVVNATKSLksdSFRGLVNAVLRRFLREQ 144 Haemophilus influenzae
4210751    70 PKPWAKMLLLLTIYQVLFMDkVPISAAVDEAVKIAKRHdgqATANFINAVLRNFMRSE 127 Lactococcus lactis
2500952    72 QPPDLRRIVQLGLYQLRYLDqVPASAAVNTGVDLAKANglkGLSKVVNGMLRRYQRAE 129 Synechocystis sp. PCC 6803
3915867    73 VKPWVIQLLRLSLYQMEYLEkIPDRAAIHEAVEIAKIRghkGIASFVNGVLRSIQREG 130 Bacillus subtilis
4982078    69 IPPAVRVALRMGAYQLLFMNsVPDYAAVSETVKLVKNE---NFKKLVNAVLRRLRTVP 123 Thermotoga maritima
1169714    64 KDHDIFCLILTGFYQLNYLN-IPTHTIVNQTVGAAEILkkpWAKGLINKLLRRFIAEK 120 Coxiella burnetii
6459968   103 THPKARALLLAGAFEKLHLD-TPLHAVVNEYVNLARDAr-lAPPGLVNAVLRRVEKAD 158 Deinococcus radiodurans
2829532    84 IDPVLLDLLRLGTYQLLRTR-VDAHAAVSTTVEQAGIEfdsARAGFVNGVLRTIAGRD 140 Mycobacterium tuberculosis
2648195    78 LDPFTRNLLRIAVYEMKYKG-VHPALATDSAVRIARER---GKASLVNAVLRKVEKLD 131 Archaeoglobus fulgidus
3257494    80 LDTYLANLLRIGTFEMKFKG-VNPAIATDSVVRVVKEKfdlTRAKFANAVLREVEKFN 136 Pyrococcus horikoshii

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