1N9R,1B34,1B34,1D3B,1D3B,1H64,1IB8,1KQ1,1LJO,1M5Q,1Y96,1Y96,2FB7,2VC8,2Y9A,3BW1,3CW1,3SWN,3SWN,3SWN,1YCY,2FWK,4A53


Conserved Protein Domain Family
Sm_like

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cd00600: Sm_like 
Click on image for an interactive view with Cn3D
Sm and related proteins
The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.
Statistics
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PSSM-Id: 212462
Aligned: 45 rows
Threshold Bit Score: 27.2128
Created: 7-Mar-2002
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 4 residues -Click on image for an interactive view with Cn3D
Feature 1:RNA binding site [nucleic acid binding site]
Evidence:
  • Structure:2Y9A; Human spliceosomal U4 snRNP core domain, contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                      ##                              # #      
1N9R_A        26 LKGLVNHRVGVKLkfnsTEYRGTLVSTDnyFNLQLNeaeefvag-------vshgtlgEIFIRCNNVLYIR 89  baker's yeast
2Y9A_G         9 LKKFMDKKLSLKLng-gRHVQGILRGFDpfMNLVIDecvemats-------gqqnnigMVVIRGNSIIMLE 71  human
AAS52638      30 LNDLLGATLRVEVgp-dRVLYGVLVALDchANYLLDrvverrg--------grerelgLVSVPSEAVGNVK 91  Ashbya gossypii ATCC 10895
CAG62092       9 VSDFIGSTLFIEIdd-dRSLQGILVAVDcqMNLLLDhvhehtks-------igsrtlgLVSVPQYTIKNIK 71  Candida glabrata
CAG89808       8 PEKFIGAQLRLKLtd-lRVLDGVLTVVDpfGNLLLTnvfeisedrld-sknlhkrelgLVSVPRDTITNVL 76  Debaryomyces hansenii CB...
XP_451488      9 LHDLLSETLYINLdq-kRSLTGKLIAIDckANLLLDevvennd--------ghvrkmgLVSVPFVSVRSVK 70  Kluyveromyces lactis NRR...
XP_001644266   6 LHDFIGSTLYVSIdd-nRYIKGTLVALDsqLNLLMNhvreqngeg----snlvqramgLVSIPQSTIKSIK 71  Vanderwaltozyma polyspor...
XP_002499101  15 LPDFVGCTLYVNLhn-nRILKGSLMALDaqLNLLLDhvqeragd-------gnrrtlgLVSVPRKTIQAIK 77  Zygosaccharomyces rouxii...
CCE72944       8 PSKFIGTKLFLRVkd-gRSLQGILTVIDpfGNLLMNnvvetskdkln-yqenherelgLVSVPRDEIVQVL 76  Millerozyma farinosa CBS...
XP_003673789  10 LNDFIGCTLYVSLek-eRSLQGTLVAIDaqCNLLLDhvyertiiptttgnkkndrslgLVSVPKSSIKSIE 79  Naumovozyma castellii CB...

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