1E2U,1MJG,1JQK,1MJG


Conserved Protein Domain Family
HCP_like

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cd00587: HCP_like 
Click on image for an interactive view with Cn3D
The HCP family of iron-sulfur proteins includes hybrid cluster protein (HCP), acetyl-CoA synthase (ACS), and carbon monoxide dehydrogenase (CODH), all of which contain [Fe4-S4] metal clusters at their active sites. These proteins have a conserved alpha-beta rossman fold domain. HCP, formerly known as prismane, is thought to play a role in nitrogen metabolism but its specific function is unknown. Acetyl-CoA synthase (ACS), is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide and CoA.
Statistics
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PSSM-Id: 238330
Aligned: 5 rows
Threshold Bit Score: 168.927
Created: 7-Mar-2002
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
metal clusterACS interactionCODH
Conserved site includes 5 residues -Click on image for an interactive view with Cn3D
Feature 1:metal cluster binding site [ion binding site]
Evidence:
  • Comment:not present in all members of this superfamily
  • Structure:1E2U_A; A hybrid cluster exists in HCP and CODH

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                     
1E2U_A    153 IGLKGVAAYAEHAAVLg--------------------------------------------------------------- 169 Desulfovibrio vulg...
1MJG_A    105 MILTGAAAHCEHGNHIahalvemaegkapdysvkdeaklkev---------------crrvgievegksvlelaqevgek 169 Moorella thermoace...
1JQK_A     87 MIAAGTAAHSEHGRHIalamqhisqgelhdysirdeaklyai---------------aktlgvategrgllaivgdlaai 151 Rhodospirillum rubrum
1MJG_P     24 EVYHGAITATSYAEILlnqairtygpdhpvgypdtay-------------------------ylpvircfsgeevkklgd 78  Moorella thermoace...
P26692     88 AVLMGTCAHTAHGRHLyhwcldkfgdmpfdmgseilvdaplyrtilgkkpkslkdfgealeyceeeivqllaachtgqeg 167 Methanosaeta concilii
Feature 1                                                                                     
1E2U_A    170 -fRKTe--------------------------------IDEFMlealastt----kdlsvdemVALVMKAGGMAVTTMAL 212 Desulfovibrio vulg...
1MJG_A    170 alEDFrrlkgegeatwlmttinegrkekfrthnvvpfgIHASIselvnqahm--gmdndpvnlVFSAIRVALADYTGEHI 247 Moorella thermoace...
1JQK_A    152 tlGDFqnqdydkpcawlaasltprrvkrlgdlgllphnIDASVaqtmsrthv--gcdadptnlILGGLRVAMADLDGSML 229 Rhodospirillum rubrum
1MJG_P     79 lpPILn-------------------------------rKRAQVspv---------------lnFENARLAGEATWYAAEI 112 Moorella thermoace...
P26692    168 hyMDFeskslhsg-----------------midslgkeICDMLqtvaydmprgaadaplveigMGTLDQNKGVLIAYGHN 230 Methanosaeta concilii
Feature 1                                                                                     
1E2U_A    213 LDEANTTTygnpeitqvnigvgknpgilisghdlkdmaellkqtegtgvdvythgemlpanyypafkkyphfvgnyggsw 292 Desulfovibrio vulg...
1MJG_A    248 ATDFSDILfgtpqpvvseanmgvldpdqvnfvlhghnpllseiivqaaremegeakaagakginlvgicctgnevlmrqg 327 Moorella thermoace...
1JQK_A    230 ATELSDALfgtpqpvvsaanlgvmkrgavniavnghnpmlsdiicdvaadlrdeaiaagaaeginiigicctghevmmrh 309 Rhodospirillum rubrum
1MJG_P    113 IEALRYLKykpdepllppp------------------------------------------------------------- 131 Moorella thermoace...
P26692    231 LAAGAEAMiyteehnlwdkvdiggvcctaidltritetgreskipanlgpkakvagamgwwrkmvragimdtvivdeqcv 310 Methanosaeta concilii
Feature 1                                                                                     
1E2U_A    293 wqqnpefesfn--------------------------------------------------------------------- 303 Desulfovibrio vulg...
1MJG_A    328 iplvtsfasqelaictgaidamcvdv------------------------------------------------------ 353 Moorella thermoace...
1JQK_A    310 gvplatnylsqelpiltgaleamvv------------------------------------------------------- 334 Rhodospirillum rubrum
1MJG_P        --------------------------------------------------------------------------------     Moorella thermoace...
P26692    311 fcdvledcqqrhipviasndkimlglpdrtndsadaivedlvsfkmpgvaildpvkagevairtavavkpkreqykkesl 390 Methanosaeta concilii
Feature 1                                                                                     
1E2U_A    304 ----------------gpillttnclvplkkentyldrlyttgvvgyegakhiadrpaggakdfsaliaqakkcpppvei 367 Desulfovibrio vulg...
1MJG_A    354 --qcimpsisavaecyhtriittadnakipgayhidyqtataiesaktairmaieafkerkesnrpvyipqiknrvvagw 431 Moorella thermoace...
1JQK_A    335 --dvqcimpslpriaecfhtqiittdkhnkisgathvpfdehkavetaktiirmaiaafgrrdpnrvaipafkqksivgf 412 Rhodospirillum rubrum
1MJG_P        --------------------------------------------------------------------------------     Moorella thermoace...
P26692    391 fteqqfkdtlatctecnqcafvcpphirisemisealkgnlepfsstyevcvgcqrceqtcpqeipilklyeyanreyir 470 Methanosaeta concilii
Feature 1                                           #                             #           
1E2U_A    368 etgsivggfahhqvlaladKVVEAVKSGAIKRFVVMAGXDgrq-ksrSYYTEVAENLPk-DTVILTAGCAKyrynkln-- 443 Desulfovibrio vulg...
1MJG_A    432 slealtkllatqnaqnpirVLNQAILDGELAGVALICGCNnlkgfqdNSHLTVMKELLknNVFVVATGCSAqaagklgll 511 Moorella thermoace...
1JQK_A    413 saeavvaalakvnaddplkPLVDNVVNGNIQGIVLFVGCNttkvqqdSAYVDLAKSLAkrNVLVLATGCAAgafakaglm 492 Rhodospirillum rubrum
1MJG_P    132 --------wtgfigdpvvrRFGIKMVDWTIPGEAIILGRAkd----sKALAKIVKELMgmGFMLFICDEAVeqllee--- 196 Moorella thermoace...
P26692    471 nqkfkmragrgpvldteirKVGAPLVLGQIPGVIALVGCSnyp-ngtKECYDIAKEFVdrGYIVVATGCMAmdmslykde 549 Methanosaeta concilii
Feature 1                                                 #                                   
1E2U_A    444 -----------------------lgdiggIPRVLDAGQ------CNDSYSLAVIALKLKEVFgl------------dDIN 482 Desulfovibrio vulg...
1MJG_A    512 dpanvetycgdglkgflkrlgeganieigLPPVFHMGS------CVDNSRAVDLLMAMANDLg-------------vDTP 572 Moorella thermoace...
1JQK_A    493 tseattqyageglkgvlsaigtaaglggpLPLVMHMGS------CVDNSRAVALATALANKLg-------------vDLS 553 Rhodospirillum rubrum
1MJG_P    197 -----------------------nvklgiDYIAYPLGN------FTQIVHAANYALRAGMMFggvtpga-reeqrdyQRR 246 Moorella thermoace...
P26692    550 ---------------------dgktiweqYEGAFDGRNicnigsCVANAHIHGAAIKVATIFahrneranyddiadyIMS 608 Methanosaeta concilii
Feature 1                 # #                                                                 
1E2U_A    483 DLPVSYDIAw-yEQKAVAVLLALLFLGvkgIRLGPTLPAflspnvakvlv------------------------------ 531 Desulfovibrio vulg...
1MJG_A    573 KVPFVASAPeamSGKAAAIGTWWVSLGv-pTHVGTMPPVegsdliysiltqia--------------------------- 624 Moorella thermoace...
1JQK_A    554 DLPLVASAPecmSEKALAIGSWAVTIGl-pTHVGSVPPVigsqivtklvteta--------------------------- 605 Rhodospirillum rubrum
1MJG_P    247 RIRAFVLYLgehDMVKTAAAFGAIFTGf-pVITDQPLPEdkqipdw---------------------------------- 291 Moorella thermoace...
P26692    609 KVGACGVAWgaySQKAASIATGVNRIGi-pVVVQPSSVIyrrtfmgrtdkpedwmvidakngnmqqiepapeamlyiaet 687 Methanosaeta concilii
Feature 1                                          
1E2U_A    532 ------------------enfnikpigtVQDDIAAMM 550 Desulfovibrio vulgaris
1MJG_A    625 ---------------sdvyggyfifemdPQVAARKIL 646 Moorella thermoacetica
1JQK_A    606 ---------------kdlvggyfivdtdPKSAGDKLY 627 Rhodospirillum rubrum
1MJG_P    292 ----------------------ffsvedYDKIVQIAM 306 Moorella thermoacetica
P26692    688 keeamlemaklcfrpsdntqgrgiklthYCDISMKYF 724 Methanosaeta concilii

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