2AZO,2AOQ


Conserved Protein Domain Family
MutH-like

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cd00583: MutH-like 
Click on image for an interactive view with Cn3D
Restriction endonuclease MutH and similar endonucleases
MutH is a 28kD endonuclease involved in methyl-directed DNA mismatch repair in gram negative bacteria. MutH is both sequence-specific and methylation-specific, introducing a nick in the unmethylated strand of a hemi-methylated d(GATC) DNA duplex. MutH is homologous to the type II restriction endonuclease Sau3AI which also recognizes the d(GATC) sequence however, Sau3AI cleaves both strands regardless of their methylation state. The active form of MutH is monomeric while that of Sau3AI is homodimeric. In addition to MutH, MutS, involved in mismatch recognition, and MutL, involved in mediating the interactions between MutH and MutS, are essential in initiating mismatch repair in Escherichia coli.
Statistics
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PSSM-Id: 411704
Aligned: 76 rows
Threshold Bit Score: 278.592
Created: 7-Mar-2002
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
active siteDNA binding
Conserved site includes 5 residues -Click on image for an interactive view with Cn3D
Feature 1:active site [active site]
Evidence:
  • Structure:2AOQ: Haemophilus influenzae restriction endonuclease MutH active site binds DNA substrate and divalent cations; contacts at 4A
    View structure with Cn3D
  • Comment:active site residues located at the bottom of cleft
  • Comment:DEK triad consensus: D-X(6,30)-[ED]-X-K.
  • Comment:DEK triad is also found in BamHI, EcoRI, EcorRV, FokI, and PvuII endonucleases

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                              #             #      # #                  
2AZO_B        21 LAQAQQLSGYTLGELAALVGLVTPENLKRdKGWIGVLLEIWLGASAGSKPEQDFAALGVELKTIPVDSLGRPLETTFVCV 100 Escherichia coli
2AOQ_A        10 LSQAQSIAGLTFGELADELHIPVPIDLKRdKGWVGMLLERALGATAGSKAEQDFSHLGVELKTLPINAEGYPLETTFVSL 89  Haemophilus inf...
KRG17730      30 LERAHHLAGMTLGELAKKLNEKTPPNLLRaKGWVGQLLEKALGASAGNLDLPDFPQLGVELKTLPINAQGVPQESTYLCR 109 Candidatus Berk...
OJV85660      13 RSRANAIAGKTLQELANICMEEVPTNLLRaKGWVGQLIEKILGANAMNLDQPDFLNLAIELKTLPLTSLGLPCESTYICT 92  Gammaproteobact...
OJX90171      17 LQRCQTIAGLSFSQLCAYVGVQIPEQESQrKGWIGQVIEQALGADGKNLARPDFQELGIELKTLPLSARHIPSESTFITT 96  Legionella sp. ...
WP_075065340  13 LERAFALAGKTLGDLSREWNQTLPDSLVYaKGWIGQLLEKALGAQAGSLDQPDFIDLGIELKTLPITENGHPCESTFLCS 92  Candidatus Berk...
WP_083500126  17 MDRCRNLSGISFAQLAHRVGVSFPENPSHrKGYIGLMLELALGCDAGNESAPDFSGLGVELKTIPIAASGSPAESTFVSS 96  Legionella walt...
PJD95730      16 LARCKAIEGMSFSQLAAEQKLDIPLQMRQrKGLAGQLLEYALGASAGNLAEPDFKELQIELKTIPIGALGHPVESTYITS 95  Legionella sp.
RMH40768      14 LRRAHQVAGLTVADLASRLGQRTPANLLSnKGWMGQLLERWLNAQSASKAQPDFPELGIELKTLPVSLKGRPLESTYVCM 93  Gammaproteobact...
RUR10530       7 LQRCQLLAGLSFGQLACELSLNIPIHASRaKGWLGQAVEIFLGATAGSKAIPDFHTLGIELKTLPVNHLGKPAESTFVTS 86  Legionella sp. ...
Feature 1                          #                                                             
2AZO_B       101 APltgnSGVTWETSHVRHKLKRVLWIPVEGERSIPLaqRRVGSPLLWSPNEEEDRQLREDWEELMDMIVLGQVERITARH 180 Escherichia coli
2AOQ_A        90 APlvqnSGVKWENSHVRHKLSCVLWMPIEGSRHIPLreRHIGAPIFWKPTAEQERQLKQDWEELMDLIVLGKLDQITARI 169 Haemophilus inf...
KRG17730     110 VSlp-lQESEFYLSRVWRKCAQILWIPIQASSQLSLldRKIGTAILWMPNSHLEATLKKDWEELTQMIRLGQFDKLSAHH 188 Candidatus Berk...
OJV85660      93 APip-pHDPDWEHSRVWRKMAKILWVPVESTAGKPLlaQRIGTPILWSPSTSIQSALRQDWEELTELMTLGHFEELSAHK 171 Gammaproteobact...
OJX90171      97 IPlltiHQESWENSSCFAKLKRVLWLPVEGDATIPYahRRIGQAFLWSPVDEDLRILKEDWIYLTSQIVLGCLDELDATV 176 Legionella sp. ...
WP_075065340  93 VTlp-nHERDFYQSRAWHKLARILWIPVLMLPDRSIpqRRIGTPLLWSPSEHLAATLQQDWEEIIELITLGHFDQLDAHK 171 Candidatus Berk...
WP_083500126  97 IPlltiHQQTWKTSQCYAKLKRVLWIPVEGDKSIPFsqRRVGNGILWSPTSSQEATLEEDWTYLTDKIIAGDLESLDASV 176 Legionella walt...
PJD95730      96 IPlltiHQQTWETSQCFAKLKKVLWIPLEGDTRIPYphRRIGRALLWSPNPAQEALLKADWNHLTSQIALGQLALLDATV 175 Legionella sp.
RMH40768      94 APllelAQVSFDNSVVAAKLRKVLFVPIIGARNWPPgqRQIGQAFYWQPSASQWARIRRDFEELTELIATGHIDRIDGRL 173 Gammaproteobact...
RUR10530      87 ISlltvGKEKWLTSQCYSKLKKVLWLPIEGERDIPLpqRRIGSAILWSPTVEQERILAEDWLELTAMIGMGRLEEIHAGI 166 Legionella sp. ...
Feature 1                                                        
2AZO_B       181 GeyLQIRPKAANAKALTEAIGArgeRILTLPRGFYLKKNFTSALLARH 228 Escherichia coli
2AOQ_A       170 GevMQLRPKGANSRAVTKGIGKngeIIDTLPLGFYLRKEFTAQILNAF 217 Haemophilus influenzae
KRG17730     189 GtyLQLRPKAANAKQLVTVTNDqgkSIAIVPKGFYLRSCLTQMILREY 236 Candidatus Berkiella cookevillensis
OJV85660     172 GqyLQIRPKAANAKTFIKVMNHlgqTISIVPKGFYIRTSLTKQIIEQH 219 Gammaproteobacteria bacterium 39-13
OJX90171     177 GtyLQIRPKGANGKSLCYAFDRegnKVKTLPRGFYLRSRFTAMLLNQV 224 Legionella sp. 40-6
WP_075065340 172 GqyLQIRPKAANSKTLIKVVNHtgeTISIVPKGFYLRVELTKTIIHEN 219 Candidatus Berkiella aquae
WP_083500126 177 GtyLQVRPKAANGKSLSYCYDAkgnKVQTLPRGFYLRTQLTSSVLALE 224 Legionella waltersii
PJD95730     176 GeaLQIRPKAAHSHSLCYSFDAegnKVKTMPRGFYLRSTFTQSILTSV 223 Legionella sp.
RMH40768     174 GqvLQIRPKGPNGQALTASHNAngeKILTLPRGFYLRASFTQEILTRA 221 Gammaproteobacteria bacterium
RUR10530     167 GryLQVRPKAANGRSLCYGFDAtgnKVLTLPRGFYLRSSFTATILASE 214 Legionella sp. km542

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