1QLA


Conserved Protein Domain Family
QFR_TypeB_TM

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cd00581: QFR_TypeB_TM 
Click on image for an interactive view with Cn3D
Quinol:fumarate reductase (QFR) Type B subfamily, transmembrane subunit; QFR couples the reduction of fumarate to succinate to the oxidation of quinol to quinone, the opposite reaction to that catalyzed by the related protein, succinate:quinone oxidoreductase (SQR). QFRs oxidize low potential quinols such as menaquinol and rhodoquinol and are involved in anaerobic respiration with fumarate as the terminal electron acceptor. SQR and QFR share a common subunit arrangement, composed of a flavoprotein catalytic subunit, an iron-sulfur protein and one or two hydrophobic transmembrane subunits. Members of this subfamily are classified as Type B as they contain one transmembrane subunit and two heme groups. The heme and quinone binding sites reside in the transmembrane subunit. The structural arrangement allows efficient electron transfer between the catalytic subunit, through iron-sulfur centers, and the transmembrane subunit containing the electron donor (quinol). The Type B enzyme from Desulfovibrio gigas is capable of fumarate reduction and succinate oxidation.
Statistics
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PSSM-Id: 238325
Aligned: 12 rows
Threshold Bit Score: 205.641
Created: 7-Mar-2002
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 13 residues -Click on image for an interactive view with Cn3D
Feature 1:proximal heme binding site [chemical binding site]
Evidence:
  • Structure:1QLA; Wolinella succinogenes Fumarate Reductase transmembrane subunit binds the proximal heme; contacts at 3.5A
  • Comment:Members of this subfamily contain two heme groups, one proximal and the other distal to the [3Fe-4S] cluster of the iron-sulfur subunit. Two histidines coordinate with iron in each heme.
  • Comment:Heme is essential for functional assembly and structural stability of the transmembrane subunit.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1           ##  #  #                                                         ##  #      
1QLA_C       26 LDWWQSATGLFLGLFMIGHMFFVSTILLGDNVMLWVTKKFEldfif--eggkPIVVSFLAAFVFAVFIAHAFLAMRKFPi 103 Wolinella succin...
2282001      22 LDRWQSLTGLFLALFMTCHMIFTSTILLGPEAFDWVIGKAEmdfwf--egglPWVTSLVTLGVLVLFLAHGFLAMRKLPa 99  Wolinella succin...
12230113     26 LDFLQSATGLILALFMIAHMFLVSSILISDEAMYKVAKFFEgslfl--kagePAIVSVVAAGVILILVAHAFLALRKFPi 103 Helicobacter pyl...
AAZ46525     40 LDVLQSATGCILAVFLMAHMFFVSTILISQQAFYTVARFFEgayff--arpyPALVSCVVAVVIALFIGHAGLAMRKFPa 117 Dechloromonas ar...
AAP77282     26 LDFWQSATGLFLGLFMLAHLLFVSSILISKEAMYKVTKFFEgsmif-geagePRLVSVIVAIVIIALVVHAFLALRKFPi 104 Helicobacter hep...
ZP_00368812  24 LDYIQSATGLILGLFMWAHMLFVSTILVSDDFFDSVVHFLElkfii-nspmmSYITSFLAACVLVIFFVHAGLAMRKFPi 102 Campylobacter la...
ZP_00586041  14 LDLGQSVSGVVLALFLWTHLLLVSSILLGPEAMTWVARNMElaflsddghgyPWVVSLIAIGVAALAAFHVLVAIHKLPl 93  Shewanella amazo...
EAP04326     60 ADRIQSATGILLGCFLLAHLHFESSILFGKETFYHVVQFLEggmfsstghgmPIVTKVFSIFIMLVVMLHAAVALRRFPa 139 Shewanella sp. PV-4
ZP_00580213  24 ADCLQSATGLILGIFLLFHMHFEASILFGKETFFHMVQFLEgsmfsstghgfPIVTKIISVIMLVIVAVHAATALRRFPv 103 Shewanella balti...
ABB38059     20 LDFLQMLSGVLLILFLWAHLLLVSSVILSPRLMNAIAWFFEa----------TFMAQIGGPVIFALMLFHFILAGRKMPf 89  Desulfovibrio de...
AAS97731     19 FDVVQMLSGAFLALFVCMHMVFLSSVLFGAGAMDGLSALFEa----------VHAEAVGGAIVVAAFVAHIVAVGRKIPf 88  Desulfovibrio vu...
ZP_01104471   1 MDLLQGLTGLLLVIFMWAHLFAVSSILLGKPAMYAVTRFFEgalff--atpqPWLVSLVALAIFTLFVTHTLLALRKIPa 78  gamma proteobact...
Feature 1                             #      #                                                # 
1QLA_C      104 nYRQYLTFKTHKDLMrHGDTTLWWIQAMTGFAMFFLGSVHLYIMMTQPQtiGPVSSSFRMVSEWMWPLYLVLLFAVELHG 183 Wolinella succin...
2282001     100 nYLQLAQFLSHRQLLsHTGTTLWWLQCLSGLALLVLGGAHLLMILTSKEtlSATTAAYRFVHGGLGSFYLLLLLVSTLHA 179 Wolinella succin...
12230113    104 nYRQYKVFKTHKHLMkHGDTSLWFIQALTGFAMFFLASIHLFVMLTEPEsiGPHGSSYRFVTQNFWLLYIFLLFAVELHG 183 Helicobacter pyl...
AAZ46525    118 gFRQFNAFRRHKNRFqHSDTSLWWIQAWTGFALFFMATIHLYDMLTQPAliGPFESADRVWSGNMWPLYLALLFAVELHG 197 Dechloromonas ar...
AAP77282    105 nYKQFLALRVHKDLMkHGDTSYWAIQAATGFAIFFLAMPHVFIMLTQPEniGPSASSYRFYHQDFYLLYALLLFAVEFHG 184 Helicobacter hep...
ZP_00368812 103 nFRQYQLCRTHLKYMnHGDSSLWWVQAATGFVMFFLGSAHLIFIITNADkiSADMSGDRVVSHFMWLFYIALLICVELHG 182 Campylobacter la...
ZP_00586041  94 sLRQQKALKSQMQVInHSDTRLWSWQAGTGIVILMLLPVHLWLVGSAPEtiGPVGSAQRIWGEYGYLIYLPLLLTVELHA 173 Shewanella amazo...
EAP04326    140 qLGQWRALRNHMQGIkHKDSHAWFWQLVTGFILFFLAPVHIFTMITNPEi-GPHLSAERVYHANAWLLYALLLPAVVVHA 218 Shewanella sp. PV-4
ZP_00580213 104 qLGQWRAMRGFMSSIkHRDTQAWFWQMITGFLLFFLVSAHLATMILNPDi-GPHLSAERVYHDNAWLLYVVFLPIVLFHG 182 Shewanella balti...
ABB38059     90 rTTEQRAFLRHAGMLrHKDTWMWVAQVVTALIILVMASIHMYEVLTDLPi-TAQKSAARIQHGGWLSFYLILLPMAEIHV 168 Desulfovibrio de...
AAS97731     89 rMAESIVMYRHARLLhHADTWRWVVQVLTALVLLLMVTVHMWEGFMVMPv-AAGTSAVRVQHGPWGFFYLALLPVLVLHL 167 Desulfovibrio vu...
ZP_01104471  79 gYRQWRAWIIHMRGMrHEETSLWLLQVVTGLVLMFFATAHLLELFIHPAd-IGPHASAARIADGGWVLGLVLLLSVEVHA 157 gamma proteobact...
Feature 1         #   #  #                                          
1QLA_C      184 SVGLYRLAVKWGwfdgetpdKTRANLKKLKTLMSAFLIVLGLLTFGAYVKKG 235 Wolinella succinogenes
2282001     180 GIGAYRLILKWCpie---asEPKTLQRRIRNVRSEVFGVFGVLTLLALWADF 228 Wolinella succinogenes
12230113    184 SIGLYRLAIKWGwf----knVSIQGLRKIKWAMSVFFIVLGLCTYGAYIKKG 231 Helicobacter pylori J99
AAZ46525    198 GIGLYRLAIKWGwlegsdpqRSRRRLAIVRYSFSAFFVTLGLVTLLTYIDLG 249 Dechloromonas aromatica RCB
AAP77282    185 SIGLYRLCIKWGwf----egLGIKALRAIKLALTAFCLILGIASYVAYMQIG 232 Helicobacter hepaticus ATCC 51449
ZP_00368812 183 SIGLYRLCVKWGwfegkdakESRKKLKKAKWFISIFFLVLGVLSLAAFAKIG 234 Campylobacter lari RM2100
ZP_00586041 174 AIGLYRVALKWGaar---dlNTRARLRTIKTVLSVLFVGIGLAALLAFIPHT 222 Shewanella amazonensis SB2B
EAP04326    219 MIGLYRVAVKWGl------iRHRKGLRKAIKVLIIYLMTLGILSLISYIMIG 264 Shewanella sp. PV-4
ZP_00580213 183 IVGLYRVILKWGv------sSNRPLIRTIAQVLIVYLLCLGTLSLVTYINIG 228 Shewanella baltica OS155
ABB38059    169 GVGFYRIGVKYGfi----trENRKWYQRTENAMMIGFIAVGLLTLVRFMFLD 216 Desulfovibrio desulfuricans G20
AAS97731    168 AIGVWRLSVKWGal----asAARPKARRWERWFIGAFLGLALLTLLRLWTLP 215 Desulfovibrio vulgaris subsp. vulgaris str. ...
ZP_01104471 158 GVGLYRLIIKWGwfgwgdtvHKRRRLRRAVYALIAFFLLLGLATQQAYLRIG 209 gamma proteobacterium KT 71

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