1FX3


Conserved Protein Domain Family
Translocase_SecB

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cd00557: Translocase_SecB 
Click on image for an interactive view with Cn3D
Preprotein translocase subunit SecB. SecB is a cytoplasmic component of the multisubunit membrane-bound enzyme termed Sec protein translocase, which is the main constituent of the General Secretory (type II) Pathway involved in translocation of nascent polypeptides across the cytoplasmic membrane. SecB has been shown to function as export-specific molecular chaperone that selectively binds preproteins, maintains them in a translocation competent state and delivers them to SecA, the membrane-bound ATPase, that drives the translocation reaction. In solution, SecB exists as homotetramer, which is organized as a dimer of dimers.
Statistics
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PSSM-Id: 238312
Aligned: 4 rows
Threshold Bit Score: 173.471
Created: 7-Mar-2002
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
SecA bindingPreprotein
Conserved site includes 4 residues -Click on image for an interactive view with Cn3D
Feature 1:SecA binding site
Evidence:
  • Comment:highlighted residues are important for the high-affinity SecB-SecA interaction.
  • Citation:PMID 7559415
  • Citation:PMID 9767586

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1              #   #                                                       # #        
1FX3_B     18 LQIQRIYVKDVSFEAPNlph-ifQQEWKPKLGFDLSTETTQVG--DDLYEVVLNISVETTLEdsGDVAFICEVKQAGVFT 94  Haemophilus influe...
134398     11 FQIQRIYTKDISFEAPNaph-vfQKDWQPEVKLDLDTASSQLA--DDVYEVVLRVTVTASLG--EETAFLCEVQQGGIFS 85  Escherichia coli
6647815    15 ISVNAQYIKDLSLENPSapsslaALDQRPQIDLSLDINITNLSe-ENFYEVELNIEAIARNE--KYKLFQIELKYAGVFN 91  Rickettsia prowazekii
2495927     9 LKFSNYIVKHIEFILNEv----pEKDEKIRLNVNIDTEIRYNKnePNKFITIIKITAGEKKDf-AKSPVYLSVEVWGFFE 83  Methanococcus jann...
Feature 1                                                           
1FX3_B     95 ISGLEDVQMAHCLTSQCPNMLFPYARELVSNLVNRGTFPALNLSPVNFDALFVE 148 Haemophilus influenzae
134398     86 IAGIEGTQMAHCLGAYCPNILFPYARECITSMVSRGTFPQLNLAPVNFDALFMN 139 Escherichia coli
6647815    92 LINIDSEQHPILLSVHCPAMIFPFARKIIASCTQDAGFQPLMIDPIDFGALYHK 145 Rickettsia prowazekii
2495927    84 VIEEAIDKVRQFAEINSVAILFPYVRALISTITANANIPPVILPPINVAGMMAN 137 Methanococcus jannaschii

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